Wall clock time and date at job start Mon Mar 30 2020 03:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47282 * 2 1 4 4 C 1.53004 * 109.46685 * 240.00523 * 2 1 3 5 5 C 1.52994 * 109.47450 * 120.00729 * 2 1 3 6 6 C 1.53004 * 110.53763 * 59.29079 * 5 2 1 7 7 N 1.47321 * 110.59416 * 296.46601 * 5 2 1 8 8 C 1.34868 * 106.43370 * 241.52010 * 7 5 2 9 9 O 1.21531 * 123.72372 * 179.97438 * 8 7 5 10 10 N 1.33782 * 112.50539 * 359.86578 * 8 7 5 11 11 C 1.37518 * 124.18010 * 180.12407 * 10 8 7 12 12 H 1.07999 * 119.99770 * 327.04722 * 11 10 8 13 13 C 1.38895 * 120.00169 * 147.04732 * 11 10 8 14 14 N 1.31386 * 120.00000 * 340.11523 * 13 11 10 15 15 Si 1.86796 * 120.00270 * 160.11339 * 13 11 10 16 16 H 1.48507 * 109.46860 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47333 * 119.99642 * 15 13 11 18 18 H 1.48498 * 109.47409 * 239.99997 * 15 13 11 19 19 C 1.34765 * 111.64528 * 0.08761 * 10 8 7 20 20 O 1.21233 * 127.15876 * 180.02562 * 19 10 8 21 21 H 1.09000 * 109.46821 * 299.99756 * 1 2 3 22 22 H 1.08997 * 109.47500 * 59.99294 * 1 2 3 23 23 H 1.08997 * 109.47620 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47102 * 180.02562 * 3 2 1 25 25 H 1.08994 * 109.46962 * 300.00536 * 3 2 1 26 26 H 1.09000 * 109.46993 * 60.00349 * 3 2 1 27 27 H 1.09002 * 109.47125 * 299.99700 * 4 2 1 28 28 H 1.08994 * 109.47410 * 59.99555 * 4 2 1 29 29 H 1.09007 * 109.46954 * 180.02562 * 4 2 1 30 30 H 1.09000 * 109.46792 * 60.00272 * 6 5 2 31 31 H 1.09000 * 109.47132 * 180.02562 * 6 5 2 32 32 H 1.08994 * 109.47372 * 300.00367 * 6 5 2 33 33 H 0.96994 * 126.69326 * 61.44984 * 7 5 2 34 34 H 0.96998 * 120.00278 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0400 -0.7214 1.2491 6 6 1.5292 -2.1632 1.2825 7 7 1.6334 0.0009 2.4670 8 6 2.7714 0.3721 3.0883 9 8 2.7982 0.9929 4.1328 10 7 3.8667 -0.0208 2.4284 11 6 5.1524 0.2276 2.8484 12 1 5.3791 1.1375 3.3843 13 6 6.1594 -0.6916 2.5835 14 7 5.8535 -1.9371 2.2981 15 14 7.9486 -0.1572 2.6330 16 1 8.0249 1.2859 2.9754 17 1 8.6735 -0.9488 3.6592 18 1 8.5699 -0.3835 1.3034 19 6 3.5546 -0.6908 1.3016 20 8 4.3250 -1.1699 0.4973 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8899 26 1 1.6768 1.9563 0.8900 27 1 1.6766 -1.7489 -1.2494 28 1 1.6765 -0.2074 -2.1393 29 1 3.1300 -0.7216 -1.2492 30 1 1.8821 -2.6942 0.3984 31 1 1.9019 -2.6601 2.1782 32 1 0.4393 -2.1623 1.2948 33 1 0.7259 0.1751 2.7617 34 1 6.5568 -2.5791 2.1134 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057845170.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:19 Heat of formation + Delta-G solvation = -46.442204 kcal Electronic energy + Delta-G solvation = -18924.228924 eV Core-core repulsion = 16051.160687 eV Total energy + Delta-G solvation = -2873.068238 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.47974 -37.57183 -36.60654 -34.40089 -33.38878 -31.43268 -29.59788 -27.29090 -26.66782 -25.55816 -23.70936 -21.37123 -20.54820 -18.41265 -17.39934 -16.20517 -15.83291 -15.33726 -14.47092 -14.43742 -14.01356 -13.78352 -13.69502 -13.65621 -12.53371 -12.38352 -12.18704 -11.98117 -11.80046 -11.62483 -11.59583 -11.15899 -11.03483 -10.85886 -10.76603 -10.50482 -10.45475 -10.33341 -9.55147 -9.24514 -8.62224 -8.51791 -7.86776 -6.39130 -4.13974 3.05330 3.22107 3.28456 3.33887 3.64750 4.19126 4.45714 4.55081 4.81597 5.06107 5.11510 5.26996 5.41901 5.52929 5.67867 5.79321 5.93481 5.97724 6.01814 6.05566 6.14181 6.20998 6.29802 6.33499 6.53696 6.65968 6.76152 6.76948 7.48755 7.71208 8.02511 8.27321 8.79852 9.12041 9.24927 9.87166 10.70729 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.030388 B = 0.010277 C = 0.009188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.205737 B = 2723.766169 C = 3046.768715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.056 4.056 3 C -0.144 4.144 4 C -0.149 4.149 5 C 0.125 3.875 6 C -0.142 4.142 7 N -0.739 5.739 8 C 0.677 3.323 9 O -0.575 6.575 10 N -0.408 5.408 11 C -0.352 4.352 12 H 0.102 0.898 13 C 0.058 3.942 14 N -0.828 5.828 15 Si 0.927 3.073 16 H -0.266 1.266 17 H -0.280 1.280 18 H -0.277 1.277 19 C 0.505 3.495 20 O -0.459 6.459 21 H 0.053 0.947 22 H 0.056 0.944 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.419 0.581 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.282 0.755 -6.263 11.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.057 4.057 3 C -0.201 4.201 4 C -0.206 4.206 5 C 0.034 3.966 6 C -0.200 4.200 7 N -0.404 5.404 8 C 0.381 3.619 9 O -0.453 6.453 10 N -0.140 5.140 11 C -0.478 4.478 12 H 0.120 0.880 13 C -0.153 4.153 14 N -0.461 5.461 15 Si 0.753 3.247 16 H -0.190 1.190 17 H -0.206 1.206 18 H -0.203 1.203 19 C 0.292 3.708 20 O -0.330 6.330 21 H 0.072 0.928 22 H 0.075 0.925 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.261 0.739 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.615 0.639 -6.169 10.615 hybrid contribution 0.318 0.106 0.271 0.431 sum -8.297 0.744 -5.898 10.207 Atomic orbital electron populations 1.21896 0.94313 1.01823 1.01632 1.20578 0.95585 0.95796 0.93785 1.21885 1.01906 0.94845 1.01489 1.22019 1.03730 0.99613 0.95256 1.21436 0.95549 0.93523 0.86120 1.21954 1.00678 0.93713 1.03628 1.45688 1.07531 1.61496 1.25659 1.16501 0.81534 0.80810 0.83043 1.90803 1.86244 1.45495 1.22794 1.41827 1.06121 1.47155 1.18869 1.19376 0.80208 1.06237 1.41937 0.88047 1.25305 1.00723 0.93858 0.95444 1.69922 1.34586 1.01720 1.39827 0.85886 0.81686 0.79215 0.77913 1.18997 1.20638 1.20296 1.19958 0.87866 0.81055 0.81966 1.90558 1.56125 1.44573 1.41752 0.92769 0.92457 0.92216 0.92112 0.92605 0.92417 0.92416 0.92943 0.90211 0.90522 0.91748 0.91813 0.73912 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.01 37.16 0.30 -1.32 16 2 C -0.06 -0.85 0.42 -154.51 -0.07 -0.92 16 3 C -0.14 -2.31 7.95 37.16 0.30 -2.01 16 4 C -0.15 -2.21 7.87 37.16 0.29 -1.92 16 5 C 0.13 2.31 0.48 -132.09 -0.06 2.25 16 6 C -0.14 -2.29 8.26 37.16 0.31 -1.99 16 7 N -0.74 -13.89 4.77 -52.84 -0.25 -14.15 16 8 C 0.68 16.68 8.49 -87.72 -0.74 15.94 16 9 O -0.58 -15.76 17.62 5.34 0.09 -15.67 16 10 N -0.41 -10.85 2.69 -65.48 -0.18 -11.03 16 11 C -0.35 -10.08 9.46 -14.76 -0.14 -10.22 16 12 H 0.10 2.91 7.91 -52.49 -0.41 2.50 16 13 C 0.06 1.61 4.82 -17.50 -0.08 1.52 16 14 N -0.83 -23.81 11.19 55.49 0.62 -23.19 16 15 Si 0.93 21.40 29.60 -169.99 -5.03 16.37 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 C 0.51 12.28 4.71 -10.56 -0.05 12.23 16 20 O -0.46 -12.24 13.37 5.60 0.07 -12.16 16 21 H 0.05 0.60 7.29 -51.93 -0.38 0.22 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.63 6.50 -51.93 -0.34 0.29 16 24 H 0.06 1.15 7.22 -51.93 -0.37 0.78 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.94 7.57 -51.93 -0.39 0.55 16 27 H 0.06 0.79 6.54 -51.93 -0.34 0.45 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.44 6.01 -51.93 -0.31 1.13 16 30 H 0.08 1.22 6.55 -51.93 -0.34 0.88 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 0.81 6.52 -51.93 -0.34 0.47 16 33 H 0.42 6.43 8.32 -40.82 -0.34 6.09 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 272.32 15.07 4.10 4.10 Total: -1.00 -32.87 272.32 -4.91 -37.78 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -4.39 Total: 4.38 kcal Atomic # 6 Polarization: 13.51 SS G_CDS: 0.05 Total: 13.56 kcal Atomic # 7 Polarization: -48.56 SS G_CDS: 0.19 Total: -48.37 kcal Atomic # 8 Polarization: -28.00 SS G_CDS: 0.17 Total: -27.83 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.03 Total: 16.37 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -32.87 -4.91 -37.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057845170.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.661 kcal (2) G-P(sol) polarization free energy of solvation -32.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds