Wall clock time and date at job start Mon Mar 30 2020 03:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47282 * 2 1 4 4 C 1.53004 * 109.46685 * 240.00523 * 2 1 3 5 5 C 1.52994 * 109.47450 * 120.00729 * 2 1 3 6 6 C 1.53004 * 110.53763 * 59.29079 * 5 2 1 7 7 N 1.47321 * 110.59416 * 296.46601 * 5 2 1 8 8 C 1.34868 * 106.43370 * 241.52010 * 7 5 2 9 9 O 1.21531 * 123.72372 * 179.97438 * 8 7 5 10 10 N 1.33782 * 112.50539 * 359.86578 * 8 7 5 11 11 C 1.37518 * 124.18010 * 180.12407 * 10 8 7 12 12 H 1.07999 * 119.99770 * 327.04722 * 11 10 8 13 13 C 1.38895 * 120.00169 * 147.04732 * 11 10 8 14 14 N 1.31386 * 120.00000 * 340.11523 * 13 11 10 15 15 Si 1.86796 * 120.00270 * 160.11339 * 13 11 10 16 16 H 1.48507 * 109.46860 * 359.97438 * 15 13 11 17 17 H 1.48497 * 109.47333 * 119.99642 * 15 13 11 18 18 H 1.48498 * 109.47409 * 239.99997 * 15 13 11 19 19 C 1.34765 * 111.64528 * 0.08761 * 10 8 7 20 20 O 1.21233 * 127.15876 * 180.02562 * 19 10 8 21 21 H 1.09000 * 109.46821 * 299.99756 * 1 2 3 22 22 H 1.08997 * 109.47500 * 59.99294 * 1 2 3 23 23 H 1.08997 * 109.47620 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47102 * 180.02562 * 3 2 1 25 25 H 1.08994 * 109.46962 * 300.00536 * 3 2 1 26 26 H 1.09000 * 109.46993 * 60.00349 * 3 2 1 27 27 H 1.09002 * 109.47125 * 299.99700 * 4 2 1 28 28 H 1.08994 * 109.47410 * 59.99555 * 4 2 1 29 29 H 1.09007 * 109.46954 * 180.02562 * 4 2 1 30 30 H 1.09000 * 109.46792 * 60.00272 * 6 5 2 31 31 H 1.09000 * 109.47132 * 180.02562 * 6 5 2 32 32 H 1.08994 * 109.47372 * 300.00367 * 6 5 2 33 33 H 0.96994 * 126.69326 * 61.44984 * 7 5 2 34 34 H 0.96998 * 120.00278 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 2.0400 -0.7214 1.2491 6 6 1.5292 -2.1632 1.2825 7 7 1.6334 0.0009 2.4670 8 6 2.7714 0.3721 3.0883 9 8 2.7982 0.9929 4.1328 10 7 3.8667 -0.0208 2.4284 11 6 5.1524 0.2276 2.8484 12 1 5.3791 1.1375 3.3843 13 6 6.1594 -0.6916 2.5835 14 7 5.8535 -1.9371 2.2981 15 14 7.9486 -0.1572 2.6330 16 1 8.0249 1.2859 2.9754 17 1 8.6735 -0.9488 3.6592 18 1 8.5699 -0.3835 1.3034 19 6 3.5546 -0.6908 1.3016 20 8 4.3250 -1.1699 0.4973 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9563 -0.8899 26 1 1.6768 1.9563 0.8900 27 1 1.6766 -1.7489 -1.2494 28 1 1.6765 -0.2074 -2.1393 29 1 3.1300 -0.7216 -1.2492 30 1 1.8821 -2.6942 0.3984 31 1 1.9019 -2.6601 2.1782 32 1 0.4393 -2.1623 1.2948 33 1 0.7259 0.1751 2.7617 34 1 6.5568 -2.5791 2.1134 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057845170.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:19 Heat of formation + Delta-G solvation = -70.181464 kcal Electronic energy + Delta-G solvation = -18925.258336 eV Core-core repulsion = 16051.160687 eV Total energy + Delta-G solvation = -2874.097649 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.25344 -39.32144 -38.35038 -36.37764 -35.15737 -33.39504 -31.04991 -28.48420 -27.92839 -27.45153 -25.34095 -23.11362 -22.41729 -19.88941 -19.33750 -18.03207 -17.61118 -17.11333 -16.30365 -16.18671 -15.70345 -15.57836 -15.18964 -15.01928 -14.16599 -13.95251 -13.59275 -13.51068 -13.32230 -13.00247 -12.91283 -12.89109 -12.71761 -12.30958 -12.18371 -12.12412 -11.86163 -11.65688 -11.47627 -11.27406 -10.52051 -10.19107 -9.88530 -8.50765 -6.33127 1.17954 1.34904 1.39220 1.52161 1.91831 2.33947 2.48892 2.82003 3.12286 3.41785 3.63671 3.81340 4.10802 4.28185 4.41749 4.67438 4.74060 4.76431 4.79585 4.94097 4.97994 4.98667 5.09263 5.14230 5.19438 5.30225 5.32740 5.50011 5.58253 5.90536 6.06905 6.37657 6.73168 7.19123 7.27426 7.87858 8.59713 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.030388 B = 0.010277 C = 0.009188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.205737 B = 2723.766169 C = 3046.768715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.052 4.052 3 C -0.143 4.143 4 C -0.146 4.146 5 C 0.133 3.867 6 C -0.137 4.137 7 N -0.709 5.709 8 C 0.670 3.330 9 O -0.614 6.614 10 N -0.433 5.433 11 C -0.386 4.386 12 H 0.086 0.914 13 C 0.015 3.985 14 N -0.859 5.859 15 Si 0.994 3.006 16 H -0.260 1.260 17 H -0.267 1.267 18 H -0.273 1.273 19 C 0.495 3.505 20 O -0.491 6.491 21 H 0.061 0.939 22 H 0.080 0.920 23 H 0.079 0.921 24 H 0.018 0.982 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.038 0.962 30 H 0.081 0.919 31 H 0.039 0.961 32 H 0.112 0.888 33 H 0.440 0.560 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.351 0.569 -7.577 13.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.053 4.053 3 C -0.200 4.200 4 C -0.203 4.203 5 C 0.043 3.957 6 C -0.195 4.195 7 N -0.375 5.375 8 C 0.373 3.627 9 O -0.495 6.495 10 N -0.165 5.165 11 C -0.512 4.512 12 H 0.104 0.896 13 C -0.193 4.193 14 N -0.492 5.492 15 Si 0.816 3.184 16 H -0.183 1.183 17 H -0.192 1.192 18 H -0.198 1.198 19 C 0.284 3.716 20 O -0.364 6.364 21 H 0.080 0.920 22 H 0.099 0.901 23 H 0.098 0.902 24 H 0.037 0.963 25 H 0.106 0.894 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.058 0.942 32 H 0.130 0.870 33 H 0.286 0.714 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.745 0.439 -7.499 13.110 hybrid contribution 0.926 0.177 0.642 1.141 sum -9.819 0.616 -6.856 11.992 Atomic orbital electron populations 1.21895 0.90264 1.03677 1.03277 1.20672 0.98552 0.94356 0.91758 1.21894 0.99190 0.96152 1.02754 1.21993 1.01129 1.01002 0.96226 1.21581 0.91088 0.95720 0.87334 1.21994 1.03598 0.91220 1.02706 1.45448 1.06961 1.60073 1.25014 1.16655 0.82579 0.80635 0.82857 1.90757 1.86973 1.47284 1.24463 1.42127 1.06182 1.48022 1.20171 1.19501 0.82122 1.06331 1.43253 0.89606 1.26254 1.04909 0.93656 0.94509 1.69996 1.35939 1.02597 1.40673 0.84901 0.76074 0.79197 0.78249 1.18338 1.19196 1.19836 1.20928 0.90720 0.79284 0.80674 1.90519 1.58051 1.45367 1.42447 0.91998 0.90122 0.90243 0.96322 0.89433 0.93049 0.90906 0.90028 0.94283 0.90013 0.94210 0.86964 0.71419 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 8.01 71.98 0.58 -1.81 16 2 C -0.05 -1.44 0.42 -52.18 -0.02 -1.46 16 3 C -0.14 -4.38 7.95 71.98 0.57 -3.80 16 4 C -0.15 -3.97 7.87 71.98 0.57 -3.40 16 5 C 0.13 4.73 0.48 2.98 0.00 4.73 16 6 C -0.14 -4.09 8.26 71.98 0.59 -3.50 16 7 N -0.71 -25.81 4.77 -439.33 -2.10 -27.90 16 8 C 0.67 33.66 8.49 179.34 1.52 35.18 16 9 O -0.61 -34.59 17.62 -3.81 -0.07 -34.66 16 10 N -0.43 -23.87 2.69 -598.32 -1.61 -25.48 16 11 C -0.39 -23.12 9.46 83.96 0.79 -22.32 16 12 H 0.09 5.21 7.91 -2.91 -0.02 5.19 16 13 C 0.01 0.83 4.82 84.92 0.41 1.24 16 14 N -0.86 -50.86 11.19 21.65 0.24 -50.62 16 15 Si 0.99 44.96 29.60 68.60 2.03 46.99 16 16 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 17 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 18 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 19 C 0.50 24.63 4.71 87.94 0.41 25.05 16 20 O -0.49 -27.07 13.37 -2.89 -0.04 -27.11 16 21 H 0.06 1.04 7.29 -2.39 -0.02 1.02 16 22 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.08 1.15 6.50 -2.39 -0.02 1.14 16 24 H 0.02 0.70 7.22 -2.39 -0.02 0.68 16 25 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.05 1.61 7.57 -2.39 -0.02 1.59 16 27 H 0.07 1.74 6.54 -2.39 -0.02 1.73 16 28 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.04 1.39 6.01 -2.38 -0.01 1.38 16 30 H 0.08 2.39 6.55 -2.39 -0.02 2.38 16 31 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.11 2.27 6.52 -2.39 -0.02 2.25 16 33 H 0.44 12.33 8.32 -92.71 -0.77 11.56 16 34 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -76.16 272.32 4.24 -71.93 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 0.35 Total: 16.96 kcal Atomic # 6 Polarization: 24.47 SS G_CDS: 5.43 Total: 29.90 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -3.46 Total: -104.00 kcal Atomic # 8 Polarization: -61.67 SS G_CDS: -0.11 Total: -61.77 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -76.16 4.24 -71.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057845170.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.744 kcal (2) G-P(sol) polarization free energy of solvation -76.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds