Wall clock time and date at job start Mon Mar 30 2020 03:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46871 * 2 1 4 4 C 1.53001 * 110.65930 * 302.91170 * 3 2 1 5 5 C 1.51581 * 110.59877 * 65.83140 * 3 2 1 6 6 O 1.21233 * 127.15808 * 298.55523 * 5 3 2 7 7 N 1.34769 * 105.68369 * 118.27019 * 5 3 2 8 8 C 1.33787 * 111.64565 * 0.42848 * 7 5 3 9 9 O 1.21543 * 123.77176 * 179.80520 * 8 7 5 10 10 N 1.34526 * 112.45950 * 359.53813 * 8 7 5 11 11 C 1.46501 * 126.69282 * 180.28586 * 10 8 7 12 12 C 1.52995 * 109.47131 * 89.97656 * 11 10 8 13 13 C 1.50694 * 109.47268 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00398 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00084 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00196 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00091 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47294 * 89.99946 * 17 15 13 19 19 H 1.48501 * 109.47038 * 210.00030 * 17 15 13 20 20 H 1.48506 * 109.47235 * 329.99947 * 17 15 13 21 21 H 1.09001 * 109.46538 * 299.99679 * 1 2 3 22 22 H 1.09001 * 109.47199 * 59.99849 * 1 2 3 23 23 H 1.08999 * 109.47141 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46538 * 240.00321 * 2 1 3 25 25 H 1.08996 * 109.46755 * 120.00308 * 2 1 3 26 26 H 1.08999 * 109.47398 * 297.09204 * 4 3 2 27 27 H 1.09002 * 109.46796 * 57.08977 * 4 3 2 28 28 H 1.09000 * 109.46837 * 177.08515 * 4 3 2 29 29 H 0.97006 * 124.17201 * 180.27468 * 7 5 3 30 30 H 1.09003 * 109.46903 * 209.97613 * 11 10 8 31 31 H 1.08997 * 109.46731 * 329.97492 * 11 10 8 32 32 H 1.09002 * 109.46979 * 300.00534 * 12 11 10 33 33 H 1.09007 * 109.47045 * 59.99869 * 12 11 10 34 34 H 0.96995 * 120.00344 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4865 2.2107 -1.2019 5 6 1.6700 2.1389 1.2945 6 8 0.5545 2.3480 1.7207 7 7 2.8393 2.4717 1.8763 8 6 3.8855 2.0945 1.1325 9 8 5.0433 2.2885 1.4474 10 7 3.5129 1.4715 0.0000 11 6 4.3991 0.9274 -1.0320 12 6 4.7325 -0.5288 -0.7020 13 6 5.6446 -1.0883 -1.7631 14 1 5.9550 -0.4674 -2.5905 15 6 6.0827 -2.3928 -1.6778 16 7 6.8783 -2.8812 -2.6042 17 14 5.5453 -3.4669 -0.2472 18 1 4.2889 -4.1738 -0.6036 19 1 6.6062 -4.4625 0.0501 20 1 5.3134 -2.6183 0.9492 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.8487 1.7542 -2.1230 27 1 0.3972 2.1776 -1.1838 28 1 1.8193 3.2476 -1.1548 29 1 2.9131 2.9302 2.7279 30 1 3.9014 0.9757 -2.0006 31 1 5.3185 1.5119 -1.0664 32 1 5.2301 -0.5771 0.2666 33 1 3.8130 -1.1133 -0.6676 34 1 7.1863 -3.7990 -2.5444 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070064788.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:49 Heat of formation + Delta-G solvation = -55.117862 kcal Electronic energy + Delta-G solvation = -18027.122796 eV Core-core repulsion = 15153.678354 eV Total energy + Delta-G solvation = -2873.444442 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.37688 -38.60017 -36.82302 -35.14356 -33.92209 -32.56216 -30.46488 -29.02448 -25.91600 -24.98525 -23.30084 -21.86277 -20.20934 -20.02452 -18.04212 -16.96354 -16.55438 -16.23854 -15.68366 -14.96867 -14.71720 -14.40641 -14.06615 -13.58265 -13.48557 -12.97946 -12.71355 -12.62731 -12.21659 -11.95122 -11.88300 -11.53167 -11.11606 -10.96510 -10.64700 -10.58110 -10.24801 -10.10380 -9.94005 -9.80463 -9.32868 -8.61758 -8.54699 -6.12826 -4.12612 1.65975 2.48206 3.14317 3.21572 3.24838 3.34181 3.38480 4.03596 4.38380 4.54168 4.68351 5.17102 5.21588 5.23730 5.35773 5.44560 5.57874 5.74239 5.84374 5.99115 6.02765 6.05688 6.14791 6.17299 6.31365 6.42898 6.62528 7.08445 7.20500 7.35783 7.47338 7.66872 8.33715 8.40576 8.89664 9.48662 11.00015 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.027265 B = 0.007840 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.708964 B = 3570.396065 C = 3888.557987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.118 4.118 3 C 0.118 3.882 4 C -0.146 4.146 5 C 0.534 3.466 6 O -0.475 6.475 7 N -0.684 5.684 8 C 0.693 3.307 9 O -0.543 6.543 10 N -0.607 5.607 11 C 0.158 3.842 12 C -0.029 4.029 13 C -0.523 4.523 14 H 0.075 0.925 15 C 0.072 3.928 16 N -0.898 5.898 17 Si 0.877 3.123 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.266 1.266 21 H 0.068 0.932 22 H 0.062 0.938 23 H 0.061 0.939 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.083 0.917 28 H 0.063 0.937 29 H 0.426 0.574 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.022 0.978 33 H 0.018 0.982 34 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.014 8.412 4.896 16.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.157 4.157 3 C 0.029 3.971 4 C -0.204 4.204 5 C 0.320 3.680 6 O -0.345 6.345 7 N -0.353 5.353 8 C 0.394 3.606 9 O -0.416 6.416 10 N -0.345 5.345 11 C 0.040 3.960 12 C -0.067 4.067 13 C -0.562 4.562 14 H 0.094 0.906 15 C -0.130 4.130 16 N -0.537 5.537 17 Si 0.704 3.296 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.190 1.190 21 H 0.087 0.913 22 H 0.081 0.919 23 H 0.080 0.920 24 H 0.114 0.886 25 H 0.089 0.911 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.268 0.732 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.040 0.960 33 H 0.036 0.964 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.782 8.359 5.010 16.073 hybrid contribution -0.039 -0.525 1.193 1.304 sum -12.821 7.834 6.203 16.255 Atomic orbital electron populations 1.21944 0.94185 1.02392 1.03147 1.21791 0.96847 0.92141 1.04880 1.21517 0.82527 0.98339 0.94753 1.22008 1.02150 0.99835 0.96359 1.20863 0.83996 0.76993 0.86144 1.90758 1.21540 1.53324 1.68923 1.44430 1.08451 1.57594 1.24865 1.15987 0.84301 0.79096 0.81231 1.91013 1.16572 1.60423 1.73609 1.48308 1.05447 1.58923 1.21835 1.21638 0.91372 0.96368 0.86655 1.20028 0.97088 0.91245 0.98369 1.20904 1.28810 0.97677 1.08764 0.90645 1.24946 0.94442 0.97824 0.95757 1.69892 1.33945 1.15779 1.34049 0.86822 0.78539 0.80526 0.83717 1.20183 1.21232 1.19041 0.91339 0.91923 0.92035 0.88618 0.91068 0.89814 0.89832 0.91811 0.73217 0.90081 0.89685 0.95955 0.96365 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.30 37.16 0.35 -1.37 16 2 C -0.12 -1.54 4.49 -26.73 -0.12 -1.66 16 3 C 0.12 1.56 0.86 -132.09 -0.11 1.45 16 4 C -0.15 -1.55 8.44 37.16 0.31 -1.23 16 5 C 0.53 7.15 7.28 -10.56 -0.08 7.07 16 6 O -0.48 -6.82 16.15 5.60 0.09 -6.72 16 7 N -0.68 -9.15 5.70 -15.79 -0.09 -9.24 16 8 C 0.69 11.75 8.68 -88.02 -0.76 10.99 16 9 O -0.54 -11.19 17.71 5.33 0.09 -11.09 16 10 N -0.61 -9.82 2.47 -165.09 -0.41 -10.22 16 11 C 0.16 2.91 5.78 -4.04 -0.02 2.89 16 12 C -0.03 -0.65 4.24 -27.89 -0.12 -0.77 16 13 C -0.52 -14.15 9.66 -34.44 -0.33 -14.48 16 14 H 0.08 2.16 7.99 -52.49 -0.42 1.74 16 15 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 16 N -0.90 -26.92 13.96 55.43 0.77 -26.15 16 17 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 20 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 21 H 0.07 0.80 6.16 -51.93 -0.32 0.48 16 22 H 0.06 0.59 6.41 -51.93 -0.33 0.25 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.10 1.31 7.02 -51.93 -0.36 0.95 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 26 H 0.08 0.86 7.43 -51.93 -0.39 0.47 16 27 H 0.08 0.77 6.34 -51.93 -0.33 0.44 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.43 4.60 8.96 -40.82 -0.37 4.23 16 30 H 0.08 1.33 7.36 -51.93 -0.38 0.94 16 31 H 0.08 1.66 8.03 -51.93 -0.42 1.24 16 32 H 0.02 0.55 7.20 -51.93 -0.37 0.17 16 33 H 0.02 0.39 5.71 -51.93 -0.30 0.10 16 34 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 LS Contribution 279.76 15.07 4.22 4.22 Total: -1.00 -31.87 279.76 -5.40 -37.27 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -4.42 Total: 0.48 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -0.99 Total: 4.82 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.28 Total: -45.61 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: 0.18 Total: -17.82 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.87 -5.40 -37.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070064788.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.847 kcal (2) G-P(sol) polarization free energy of solvation -31.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds