Wall clock time and date at job start Mon Mar 30 2020 03:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46871 * 2 1 4 4 C 1.53001 * 110.65930 * 302.91170 * 3 2 1 5 5 C 1.51581 * 110.59877 * 65.83140 * 3 2 1 6 6 O 1.21233 * 127.15808 * 298.55523 * 5 3 2 7 7 N 1.34769 * 105.68369 * 118.27019 * 5 3 2 8 8 C 1.33787 * 111.64565 * 0.42848 * 7 5 3 9 9 O 1.21543 * 123.77176 * 179.80520 * 8 7 5 10 10 N 1.34526 * 112.45950 * 359.53813 * 8 7 5 11 11 C 1.46501 * 126.69282 * 180.28586 * 10 8 7 12 12 C 1.52995 * 109.47131 * 89.97656 * 11 10 8 13 13 C 1.50694 * 109.47268 * 180.02562 * 12 11 10 14 14 H 1.07997 * 120.00398 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00084 * 179.97438 * 13 12 11 16 16 N 1.31513 * 120.00196 * 179.97438 * 15 13 12 17 17 Si 1.86799 * 120.00091 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47294 * 89.99946 * 17 15 13 19 19 H 1.48501 * 109.47038 * 210.00030 * 17 15 13 20 20 H 1.48506 * 109.47235 * 329.99947 * 17 15 13 21 21 H 1.09001 * 109.46538 * 299.99679 * 1 2 3 22 22 H 1.09001 * 109.47199 * 59.99849 * 1 2 3 23 23 H 1.08999 * 109.47141 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46538 * 240.00321 * 2 1 3 25 25 H 1.08996 * 109.46755 * 120.00308 * 2 1 3 26 26 H 1.08999 * 109.47398 * 297.09204 * 4 3 2 27 27 H 1.09002 * 109.46796 * 57.08977 * 4 3 2 28 28 H 1.09000 * 109.46837 * 177.08515 * 4 3 2 29 29 H 0.97006 * 124.17201 * 180.27468 * 7 5 3 30 30 H 1.09003 * 109.46903 * 209.97613 * 11 10 8 31 31 H 1.08997 * 109.46731 * 329.97492 * 11 10 8 32 32 H 1.09002 * 109.46979 * 300.00534 * 12 11 10 33 33 H 1.09007 * 109.47045 * 59.99869 * 12 11 10 34 34 H 0.96995 * 120.00344 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4865 2.2107 -1.2019 5 6 1.6700 2.1389 1.2945 6 8 0.5545 2.3480 1.7207 7 7 2.8393 2.4717 1.8763 8 6 3.8855 2.0945 1.1325 9 8 5.0433 2.2885 1.4474 10 7 3.5129 1.4715 0.0000 11 6 4.3991 0.9274 -1.0320 12 6 4.7325 -0.5288 -0.7020 13 6 5.6446 -1.0883 -1.7631 14 1 5.9550 -0.4674 -2.5905 15 6 6.0827 -2.3928 -1.6778 16 7 6.8783 -2.8812 -2.6042 17 14 5.5453 -3.4669 -0.2472 18 1 4.2889 -4.1738 -0.6036 19 1 6.6062 -4.4625 0.0501 20 1 5.3134 -2.6183 0.9492 21 1 -0.3632 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.8487 1.7542 -2.1230 27 1 0.3972 2.1776 -1.1838 28 1 1.8193 3.2476 -1.1548 29 1 2.9131 2.9302 2.7279 30 1 3.9014 0.9757 -2.0006 31 1 5.3185 1.5119 -1.0664 32 1 5.2301 -0.5771 0.2666 33 1 3.8130 -1.1133 -0.6676 34 1 7.1863 -3.7990 -2.5444 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070064788.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:49 Heat of formation + Delta-G solvation = -77.810100 kcal Electronic energy + Delta-G solvation = -18028.106806 eV Core-core repulsion = 15153.678354 eV Total energy + Delta-G solvation = -2874.428452 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -43.57754 -39.84789 -38.08411 -36.46975 -35.46446 -34.25669 -32.06851 -30.08745 -27.44051 -26.22395 -24.36083 -23.53735 -21.64438 -21.21990 -19.28564 -18.91666 -17.75657 -17.49594 -16.89000 -16.40807 -16.08457 -15.98418 -15.46126 -14.97914 -14.84466 -14.51556 -14.07583 -13.70813 -13.45025 -13.23164 -12.91747 -12.86866 -12.72423 -12.30266 -12.06075 -11.94953 -11.85402 -11.61030 -11.48630 -11.45564 -10.97712 -10.75611 -9.94360 -8.29825 -6.33633 0.51023 1.24567 1.32530 1.37304 1.46999 1.92569 1.98633 2.34410 2.91323 3.06083 3.51489 3.69455 3.97434 4.29472 4.38250 4.50651 4.55329 4.61060 4.78569 4.80912 4.86155 5.01222 5.04489 5.08775 5.10022 5.25553 5.39036 5.43134 5.47729 5.66758 6.05054 6.23431 6.33038 6.73769 7.05085 7.31192 8.86122 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.027265 B = 0.007840 C = 0.007199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.708964 B = 3570.396065 C = 3888.557987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C 0.115 3.885 4 C -0.143 4.143 5 C 0.542 3.458 6 O -0.478 6.478 7 N -0.671 5.671 8 C 0.693 3.307 9 O -0.585 6.585 10 N -0.608 5.608 11 C 0.171 3.829 12 C -0.021 4.021 13 C -0.526 4.526 14 H 0.047 0.953 15 C 0.014 3.986 16 N -0.944 5.944 17 Si 0.939 3.061 18 H -0.257 1.257 19 H -0.287 1.287 20 H -0.261 1.261 21 H 0.060 0.940 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.091 0.909 25 H 0.056 0.944 26 H 0.090 0.910 27 H 0.103 0.897 28 H 0.067 0.933 29 H 0.438 0.562 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.001 0.999 33 H 0.035 0.965 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.380 8.559 5.494 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C 0.027 3.973 4 C -0.201 4.201 5 C 0.328 3.672 6 O -0.348 6.348 7 N -0.341 5.341 8 C 0.394 3.606 9 O -0.462 6.462 10 N -0.345 5.345 11 C 0.051 3.949 12 C -0.060 4.060 13 C -0.565 4.565 14 H 0.065 0.935 15 C -0.184 4.184 16 N -0.585 5.585 17 Si 0.763 3.237 18 H -0.181 1.181 19 H -0.213 1.213 20 H -0.186 1.186 21 H 0.079 0.921 22 H 0.099 0.901 23 H 0.089 0.911 24 H 0.109 0.891 25 H 0.075 0.925 26 H 0.109 0.891 27 H 0.122 0.878 28 H 0.086 0.914 29 H 0.282 0.718 30 H 0.124 0.876 31 H 0.087 0.913 32 H 0.020 0.980 33 H 0.053 0.947 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.210 8.528 5.623 18.322 hybrid contribution 0.692 -0.516 0.978 1.305 sum -14.518 8.012 6.602 17.848 Atomic orbital electron populations 1.21903 0.92168 1.03223 1.03636 1.21813 0.98551 0.91516 1.03936 1.21810 0.80436 0.99144 0.95915 1.22066 1.03299 0.99639 0.95094 1.20806 0.83680 0.76706 0.85992 1.90774 1.21529 1.53543 1.68989 1.44228 1.07596 1.57241 1.25041 1.16105 0.84200 0.78857 0.81466 1.90985 1.18474 1.62123 1.74590 1.48181 1.06832 1.58322 1.21150 1.21280 0.91844 0.93591 0.88232 1.19899 0.96423 0.94030 0.95599 1.21240 1.28968 0.97403 1.08885 0.93479 1.25812 0.94657 0.99520 0.98371 1.70028 1.35770 1.16396 1.36276 0.85825 0.78782 0.78682 0.80378 1.18113 1.21302 1.18568 0.92070 0.90116 0.91138 0.89095 0.92478 0.89130 0.87825 0.91379 0.71794 0.87624 0.91269 0.98037 0.94696 0.92439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.30 71.99 0.67 -2.10 16 2 C -0.12 -2.80 4.49 30.60 0.14 -2.67 16 3 C 0.12 2.76 0.86 2.98 0.00 2.76 16 4 C -0.14 -2.56 8.44 71.98 0.61 -1.96 16 5 C 0.54 13.16 7.28 87.94 0.64 13.79 16 6 O -0.48 -12.35 16.15 -2.88 -0.05 -12.39 16 7 N -0.67 -16.81 5.70 -441.12 -2.52 -19.33 16 8 C 0.69 22.82 8.68 179.44 1.56 24.38 16 9 O -0.58 -24.14 17.71 -3.85 -0.07 -24.20 16 10 N -0.61 -18.75 2.47 -794.64 -1.96 -20.71 16 11 C 0.17 6.12 5.78 86.38 0.50 6.62 16 12 C -0.02 -0.94 4.24 29.84 0.13 -0.81 16 13 C -0.53 -28.73 9.66 25.60 0.25 -28.49 16 14 H 0.05 2.77 7.99 -2.91 -0.02 2.74 16 15 C 0.01 0.81 5.47 84.65 0.46 1.27 16 16 N -0.94 -57.52 13.96 21.45 0.30 -57.22 16 17 Si 0.94 43.59 27.47 68.60 1.88 45.48 16 18 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 19 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 20 H -0.26 -11.84 6.54 99.48 0.65 -11.19 16 21 H 0.06 1.23 6.16 -2.39 -0.01 1.21 16 22 H 0.08 1.18 6.41 -2.39 -0.02 1.17 16 23 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.09 2.24 7.02 -2.39 -0.02 2.22 16 25 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.09 1.53 7.43 -2.39 -0.02 1.51 16 27 H 0.10 1.47 6.34 -2.39 -0.02 1.46 16 28 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 29 H 0.44 8.74 8.96 -92.70 -0.83 7.91 16 30 H 0.11 3.27 7.36 -2.39 -0.02 3.25 16 31 H 0.07 2.71 8.03 -2.39 -0.02 2.69 16 32 H 0.00 0.06 7.20 -2.39 -0.02 0.04 16 33 H 0.03 1.44 5.71 -2.38 -0.01 1.43 16 34 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -68.60 279.76 2.78 -65.82 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: 0.23 Total: 9.75 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 4.95 Total: 12.80 kcal Atomic # 7 Polarization: -93.08 SS G_CDS: -4.18 Total: -97.25 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.11 Total: -36.60 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.88 Total: 45.48 kcal Total: -68.60 2.78 -65.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070064788.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.987 kcal (2) G-P(sol) polarization free energy of solvation -68.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds