Wall clock time and date at job start Mon Mar 30 2020 04:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47232 * 2 1 4 4 C 1.52995 * 109.47312 * 120.00347 * 2 1 3 5 5 C 1.53003 * 109.47289 * 184.99950 * 4 2 1 6 6 C 1.53001 * 117.51964 * 116.28130 * 5 4 2 7 7 C 1.52999 * 60.00190 * 107.47982 * 6 5 4 8 8 N 1.46500 * 109.47207 * 239.99976 * 2 1 3 9 9 C 1.34781 * 119.99928 * 84.99727 * 8 2 1 10 10 O 1.21438 * 119.99948 * 0.02562 * 9 8 2 11 11 C 1.48837 * 119.99911 * 180.02562 * 9 8 2 12 12 O 1.21495 * 119.99688 * 0.02562 * 11 9 8 13 13 N 1.34773 * 119.99704 * 179.97438 * 11 9 8 14 14 C 1.36116 * 120.00003 * 179.97438 * 13 11 9 15 15 H 1.08002 * 119.99896 * 0.02562 * 14 13 11 16 16 C 1.39585 * 120.00644 * 180.02562 * 14 13 11 17 17 N 1.31011 * 120.00533 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99356 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47266 * 90.00492 * 18 16 14 20 20 H 1.48506 * 109.46910 * 209.99992 * 18 16 14 21 21 H 1.48497 * 109.47748 * 329.99960 * 18 16 14 22 22 H 1.08998 * 109.47012 * 300.00172 * 1 2 3 23 23 H 1.09004 * 109.46958 * 59.99520 * 1 2 3 24 24 H 1.08994 * 109.47158 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47504 * 64.99385 * 4 2 1 26 26 H 1.09005 * 109.46851 * 304.99539 * 4 2 1 27 27 H 1.09002 * 115.54973 * 330.57913 * 5 4 2 28 28 H 1.09001 * 117.49733 * 214.97413 * 6 5 4 29 29 H 1.08995 * 117.49577 * 359.97438 * 6 5 4 30 30 H 1.09004 * 117.50150 * 252.51496 * 7 6 5 31 31 H 1.09004 * 117.51638 * 107.47550 * 7 6 5 32 32 H 0.96999 * 120.00388 * 265.00769 * 8 2 1 33 33 H 0.96999 * 120.00467 * 0.02562 * 13 11 9 34 34 H 0.96999 * 120.00178 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.6133 1.3136 6 6 4.1702 0.1530 2.4914 7 6 4.2801 -1.3719 2.4334 8 7 2.0184 -0.6906 -1.1962 9 6 2.1470 -0.0182 -2.3572 10 8 1.8586 1.1601 -2.4116 11 6 2.6426 -0.7200 -3.5726 12 8 2.9307 -1.8990 -3.5181 13 7 2.7708 -0.0478 -4.7336 14 6 3.2245 -0.6894 -5.8450 15 1 3.4814 -1.7373 -5.7965 16 6 3.3578 0.0069 -7.0475 17 7 3.7941 -0.6108 -8.1173 18 14 2.9141 1.8195 -7.1311 19 1 4.1117 2.6375 -6.8121 20 1 2.4389 2.1501 -8.4987 21 1 1.8391 2.1119 -6.1493 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.7516 -1.7715 1.2056 26 1 1.6054 -0.2617 2.1369 27 1 4.0721 -0.5402 0.3515 28 1 5.0756 0.7304 2.3042 29 1 3.4821 0.5808 3.2204 30 1 3.6643 -1.9476 3.1244 31 1 5.2577 -1.7981 2.2079 32 1 2.2490 -1.6318 -1.1527 33 1 2.5404 0.8935 -4.7771 34 1 3.8863 -0.1270 -8.9529 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070104292.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:52 Heat of formation + Delta-G solvation = -56.928752 kcal Electronic energy + Delta-G solvation = -17003.955167 eV Core-core repulsion = 14130.432198 eV Total energy + Delta-G solvation = -2873.522969 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.81109 -38.11831 -37.19068 -35.26656 -34.18819 -31.92565 -30.95700 -27.56164 -26.02637 -23.26629 -22.50651 -21.13934 -20.36585 -19.53493 -18.98968 -16.93637 -16.26264 -15.64234 -15.26240 -14.96849 -14.64718 -14.39679 -13.51549 -13.24717 -13.10505 -12.83636 -12.75103 -12.42988 -12.27477 -12.02647 -11.64622 -11.28975 -11.27001 -11.10023 -10.71584 -10.54042 -10.29461 -10.08842 -9.98209 -9.76218 -8.83735 -8.40860 -8.39616 -6.57911 -3.99519 2.32097 3.04899 3.08148 3.11083 3.31956 3.69422 3.96421 4.16646 4.42915 4.72129 4.77912 4.84769 5.06029 5.13531 5.17302 5.33451 5.45148 5.51170 5.62943 5.63855 5.71952 5.75898 5.82114 5.98979 6.09386 6.22129 6.26530 6.75963 7.27353 7.69980 7.93579 8.27045 8.53719 8.76258 9.20515 9.62851 10.52274 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.034013 B = 0.005341 C = 0.005134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.025844 B = 5241.526565 C = 5452.861707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.089 0.911 4 C -0.095 4.095 5 C -0.154 4.154 6 C -0.182 4.182 7 C -0.181 4.181 8 N -0.706 5.706 9 C 0.514 3.486 10 O -0.551 6.551 11 C 0.404 3.596 12 O -0.579 6.579 13 N -0.528 5.528 14 C -0.309 4.309 15 H 0.127 0.873 16 C 0.053 3.947 17 N -0.850 5.850 18 Si 0.876 3.124 19 H -0.264 1.264 20 H -0.271 1.271 21 H -0.260 1.260 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.410 0.590 33 H 0.384 0.616 34 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.183 2.491 17.475 17.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.107 0.893 4 C -0.132 4.132 5 C -0.172 4.172 6 C -0.219 4.219 7 C -0.218 4.218 8 N -0.360 5.360 9 C 0.299 3.701 10 O -0.429 6.429 11 C 0.189 3.811 12 O -0.465 6.465 13 N -0.165 5.165 14 C -0.439 4.439 15 H 0.145 0.855 16 C -0.155 4.155 17 N -0.488 5.488 18 Si 0.700 3.300 19 H -0.189 1.189 20 H -0.195 1.195 21 H -0.184 1.184 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.127 0.873 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.246 0.754 33 H 0.218 0.782 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.145 2.573 17.248 17.721 hybrid contribution -0.156 0.927 -0.242 0.970 sum -3.301 3.499 17.007 17.674 Atomic orbital electron populations 1.22191 0.95353 1.02227 1.02482 1.20927 0.93820 0.97721 0.83719 0.89308 1.21488 0.93090 1.01261 0.97386 1.22381 0.95140 1.04907 0.94763 1.23023 1.03170 0.94415 1.01244 1.22949 1.02260 0.94401 1.02178 1.45769 1.66719 1.14800 1.08666 1.20617 0.77747 0.86657 0.85115 1.90669 1.50531 1.16164 1.85491 1.18892 0.90106 0.87939 0.84196 1.90619 1.56153 1.15274 1.84473 1.41829 1.54057 1.11883 1.08737 1.19557 1.40155 0.98789 0.85354 0.85532 1.25224 0.96268 0.99151 0.94899 1.69439 1.41118 1.37402 1.00795 0.86683 0.80075 0.84072 0.79156 1.18913 1.19542 1.18441 0.91872 0.91806 0.92361 0.90795 0.90378 0.87267 0.89003 0.88923 0.88923 0.88860 0.75368 0.78173 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 9.48 37.16 0.35 -1.56 16 2 C 0.14 1.83 2.56 -67.93 -0.17 1.65 16 3 H 0.09 1.26 7.58 -51.93 -0.39 0.87 16 4 C -0.09 -0.93 5.03 -26.73 -0.13 -1.07 16 5 C -0.15 -1.66 5.61 -90.61 -0.51 -2.17 16 6 C -0.18 -1.71 10.18 -26.73 -0.27 -1.98 16 7 C -0.18 -1.69 10.25 -26.73 -0.27 -1.96 16 8 N -0.71 -11.33 4.50 -54.43 -0.24 -11.57 16 9 C 0.51 10.56 7.83 -11.87 -0.09 10.47 16 10 O -0.55 -12.04 16.13 5.42 0.09 -11.95 16 11 C 0.40 9.83 7.82 -11.87 -0.09 9.74 16 12 O -0.58 -15.33 16.03 5.37 0.09 -15.24 16 13 N -0.53 -13.44 5.06 -11.59 -0.06 -13.50 16 14 C -0.31 -8.68 10.16 -15.15 -0.15 -8.84 16 15 H 0.13 3.96 7.37 -52.49 -0.39 3.57 16 16 C 0.05 1.42 5.51 -17.40 -0.10 1.32 16 17 N -0.85 -23.77 13.94 55.53 0.77 -23.00 16 18 Si 0.88 19.48 27.74 -169.99 -4.72 14.76 16 19 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.26 -5.61 6.53 56.52 0.37 -5.24 16 22 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.08 0.64 7.88 -51.93 -0.41 0.23 16 27 H 0.11 1.42 7.69 -51.93 -0.40 1.02 16 28 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.09 0.76 8.03 -51.93 -0.42 0.35 16 30 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.41 6.32 8.06 -40.82 -0.33 5.99 16 33 H 0.38 9.19 5.22 -40.82 -0.21 8.98 16 34 H 0.28 7.17 8.30 -40.82 -0.34 6.83 16 LS Contribution 295.69 15.07 4.46 4.46 Total: -1.00 -30.61 295.69 -5.74 -36.35 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -4.67 Total: 14.10 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -1.45 Total: 5.60 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.47 Total: -48.07 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: 0.17 Total: -27.20 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -4.72 Total: 14.76 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.61 -5.74 -36.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070104292.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.581 kcal (2) G-P(sol) polarization free energy of solvation -30.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds