Wall clock time and date at job start Mon Mar 30 2020 03:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09007 * 110.05500 * 2 1 4 4 C 1.54272 * 110.03389 * 121.41105 * 2 1 3 5 5 C 1.54888 * 104.19388 * 142.89538 * 4 2 1 6 6 C 1.55013 * 102.75625 * 322.05116 * 5 4 2 7 7 C 1.53867 * 110.03316 * 238.58257 * 2 1 3 8 8 H 1.09002 * 110.03544 * 0.04687 * 7 2 1 9 9 N 1.46506 * 110.03494 * 121.43034 * 7 2 1 10 10 C 1.34773 * 119.99970 * 204.30679 * 9 7 2 11 11 O 1.21442 * 120.00353 * 0.02562 * 10 9 7 12 12 C 1.48836 * 119.99904 * 179.97438 * 10 9 7 13 13 O 1.21501 * 119.99752 * 0.02562 * 12 10 9 14 14 N 1.34773 * 119.99904 * 179.97438 * 12 10 9 15 15 C 1.36125 * 120.00012 * 180.02562 * 14 12 10 16 16 H 1.08000 * 119.99372 * 359.72574 * 15 14 12 17 17 C 1.39582 * 120.00268 * 179.72642 * 15 14 12 18 18 N 1.31019 * 119.99748 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00305 * 179.97438 * 17 15 14 20 20 H 1.48505 * 109.46497 * 60.00346 * 19 17 15 21 21 H 1.48492 * 109.47485 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47264 * 300.00527 * 19 17 15 23 23 H 1.08992 * 109.46720 * 181.42099 * 1 2 3 24 24 H 1.09005 * 109.46996 * 301.41741 * 1 2 3 25 25 H 1.08995 * 109.47037 * 61.41936 * 1 2 3 26 26 H 1.08998 * 110.48858 * 261.57673 * 4 2 1 27 27 H 1.08998 * 110.48268 * 24.22133 * 4 2 1 28 28 H 1.09001 * 110.75436 * 80.37628 * 5 4 2 29 29 H 1.08996 * 110.75581 * 203.55605 * 5 4 2 30 30 H 1.08997 * 110.50336 * 279.29298 * 6 5 4 31 31 H 1.09004 * 110.52606 * 156.61536 * 6 5 4 32 32 H 0.96998 * 119.99501 * 24.30401 * 9 7 2 33 33 H 0.97005 * 120.00162 * 359.73010 * 14 12 10 34 34 H 0.96999 * 119.99895 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0240 0.0000 4 6 2.0585 -0.7554 1.2370 5 6 3.3138 -1.5006 0.7192 6 6 2.8873 -1.9413 -0.7045 7 6 2.0571 -0.7535 -1.2336 8 1 1.2230 -1.1186 -1.8329 9 7 2.9034 0.1311 -2.0384 10 6 3.0713 -0.1101 -3.3537 11 8 2.5208 -1.0605 -3.8720 12 6 3.9305 0.7889 -4.1714 13 8 4.4810 1.7400 -3.6530 14 7 4.0989 0.5474 -5.4866 15 6 4.8851 1.3693 -6.2344 16 1 5.3705 2.2175 -5.7746 17 6 5.0641 1.1160 -7.5953 18 7 4.4748 0.0873 -8.1531 19 14 6.1425 2.2443 -8.6216 20 1 7.5222 2.2445 -8.0723 21 1 6.1684 1.7619 -10.0258 22 1 5.5939 3.6237 -8.5826 23 1 -0.3632 -1.0273 0.0255 24 1 -0.3633 0.5357 0.8770 25 1 -0.3633 0.4916 -0.9024 26 1 2.3297 -0.0535 2.0255 27 1 1.3144 -1.4659 1.5967 28 1 4.1711 -0.8289 0.6752 29 1 3.5346 -2.3658 1.3443 30 1 2.2766 -2.8429 -0.6582 31 1 3.7632 -2.1044 -1.3325 32 1 3.3428 0.8904 -1.6246 33 1 3.6631 -0.2146 -5.8995 34 1 4.5989 -0.0886 -9.0989 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070834715.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:43 Heat of formation + Delta-G solvation = -115.656277 kcal Electronic energy + Delta-G solvation = -17162.687580 eV Core-core repulsion = 14286.617995 eV Total energy + Delta-G solvation = -2876.069585 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.47792 -39.81326 -38.59810 -36.38729 -34.59833 -33.41820 -32.13766 -29.14953 -27.71671 -26.09258 -24.33867 -21.94586 -21.06215 -20.76228 -20.23042 -18.66296 -17.76238 -17.16362 -16.58619 -16.47832 -15.90525 -15.71234 -15.28026 -14.69483 -14.50898 -14.43973 -13.80144 -13.67639 -13.20707 -12.96913 -12.61791 -12.53980 -12.46411 -12.15737 -12.11946 -11.91999 -11.70263 -11.66432 -11.57373 -11.45698 -10.28966 -10.24372 -10.12457 -8.66604 -6.11999 0.59927 1.40659 1.49022 1.53767 1.84367 2.29600 2.36753 3.14505 3.28082 3.51838 3.66372 3.92816 4.02191 4.28726 4.44301 4.47564 4.58918 4.64323 4.72807 4.94298 4.96194 4.98594 5.13702 5.22621 5.23947 5.28834 5.33872 5.47301 5.55946 5.67843 6.17149 6.39414 6.81197 7.02737 7.27087 7.78796 8.49058 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.051115 B = 0.004831 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.653116 B = 5794.049753 C = 5857.083627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.080 0.920 4 C -0.109 4.109 5 C -0.121 4.121 6 C -0.136 4.136 7 C 0.134 3.866 8 H 0.075 0.925 9 N -0.686 5.686 10 C 0.518 3.482 11 O -0.568 6.568 12 C 0.388 3.612 13 O -0.617 6.617 14 N -0.511 5.511 15 C -0.347 4.347 16 H 0.099 0.901 17 C -0.004 4.004 18 N -0.896 5.896 19 Si 1.011 2.989 20 H -0.264 1.264 21 H -0.266 1.266 22 H -0.264 1.264 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.042 0.958 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.413 0.587 33 H 0.400 0.600 34 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.092 -2.140 15.232 16.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 H 0.098 0.902 4 C -0.147 4.147 5 C -0.159 4.159 6 C -0.174 4.174 7 C 0.030 3.970 8 H 0.093 0.907 9 N -0.338 5.338 10 C 0.301 3.699 11 O -0.447 6.447 12 C 0.173 3.827 13 O -0.507 6.507 14 N -0.144 5.144 15 C -0.477 4.477 16 H 0.117 0.883 17 C -0.208 4.208 18 N -0.534 5.534 19 Si 0.832 3.168 20 H -0.188 1.188 21 H -0.190 1.190 22 H -0.188 1.188 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.062 0.938 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.080 0.920 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.250 0.750 33 H 0.235 0.765 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.175 -2.306 15.020 16.053 hybrid contribution 0.437 0.252 -0.950 1.075 sum -4.738 -2.054 14.070 14.988 Atomic orbital electron populations 1.21845 0.93223 1.02635 1.02163 1.22073 0.97146 0.99682 0.93025 0.90155 1.22434 0.96966 0.99200 0.96058 1.22529 0.98131 1.00662 0.94537 1.22806 0.99331 0.97751 0.97557 1.22035 0.92534 0.90463 0.91983 0.90686 1.45855 1.49427 1.31499 1.07066 1.20093 0.81290 0.84544 0.83988 1.90669 1.49885 1.31372 1.72782 1.19664 0.89707 0.89430 0.83923 1.90537 1.54876 1.33522 1.71803 1.41662 1.39936 1.25864 1.06988 1.19957 1.26331 1.09717 0.91693 0.88325 1.26557 0.98330 0.98363 0.97595 1.69550 1.41425 1.27829 1.14574 0.84739 0.77935 0.77646 0.76510 1.18829 1.19049 1.18821 0.91673 0.90437 0.93840 0.89809 0.89727 0.92030 0.89746 0.89671 0.93746 0.74971 0.76515 0.90065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 8.85 71.98 0.64 -1.79 16 2 C -0.10 -1.98 3.27 -10.07 -0.03 -2.01 16 3 H 0.08 1.61 7.61 -2.38 -0.02 1.59 16 4 C -0.11 -1.65 6.36 31.67 0.20 -1.44 16 5 C -0.12 -2.23 6.91 31.93 0.22 -2.01 16 6 C -0.14 -3.39 6.54 31.71 0.21 -3.18 16 7 C 0.13 3.68 2.89 45.71 0.13 3.81 16 8 H 0.07 2.32 7.12 -2.39 -0.02 2.31 16 9 N -0.69 -23.89 5.03 -441.01 -2.22 -26.11 16 10 C 0.52 23.30 7.86 87.08 0.68 23.99 16 11 O -0.57 -27.56 16.13 -3.53 -0.06 -27.62 16 12 C 0.39 20.38 7.82 87.08 0.68 21.06 16 13 O -0.62 -34.17 16.03 -3.72 -0.06 -34.23 16 14 N -0.51 -28.63 5.25 -308.87 -1.62 -30.25 16 15 C -0.35 -19.81 9.67 84.35 0.82 -19.00 16 16 H 0.10 5.75 7.15 -2.91 -0.02 5.73 16 17 C 0.00 -0.22 5.51 85.14 0.47 0.25 16 18 N -0.90 -48.70 13.03 21.76 0.28 -48.41 16 19 Si 1.01 41.03 29.56 68.60 2.03 43.06 16 20 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 21 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 22 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 23 H 0.06 1.03 8.12 -2.39 -0.02 1.01 16 24 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 25 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.08 1.05 7.84 -2.39 -0.02 1.03 16 28 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 29 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.04 1.35 8.04 -2.38 -0.02 1.33 16 32 H 0.41 13.56 7.77 -92.71 -0.72 12.84 16 33 H 0.40 22.70 7.35 -92.70 -0.68 22.02 16 34 H 0.29 14.39 8.30 -92.71 -0.77 13.62 16 Total: -1.00 -66.11 290.16 2.09 -64.01 By element: Atomic # 1 Polarization: 40.14 SS G_CDS: -0.28 Total: 39.86 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: 4.02 Total: 19.68 kcal Atomic # 7 Polarization: -101.21 SS G_CDS: -3.55 Total: -104.77 kcal Atomic # 8 Polarization: -61.73 SS G_CDS: -0.12 Total: -61.84 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -66.11 2.09 -64.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070834715.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.643 kcal (2) G-P(sol) polarization free energy of solvation -66.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds