Wall clock time and date at job start Mon Mar 30 2020 03:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 110.01925 * 2 1 4 4 C 1.34777 * 119.99828 * 59.02099 * 3 2 1 5 5 O 1.21443 * 120.00325 * 0.28121 * 4 3 2 6 6 C 1.48827 * 120.00046 * 180.27751 * 4 3 2 7 7 O 1.21503 * 120.00063 * 0.02562 * 6 4 3 8 8 N 1.34777 * 120.00046 * 179.97438 * 6 4 3 9 9 C 1.36121 * 119.99923 * 179.97438 * 8 6 4 10 10 H 1.08002 * 120.00360 * 0.02562 * 9 8 6 11 11 C 1.39592 * 120.00132 * 180.02562 * 9 8 6 12 12 N 1.31014 * 119.99647 * 359.97438 * 11 9 8 13 13 Si 1.86794 * 120.00031 * 179.97438 * 11 9 8 14 14 H 1.48511 * 109.47064 * 90.00344 * 13 11 9 15 15 H 1.48501 * 109.47085 * 209.99923 * 13 11 9 16 16 H 1.48490 * 109.47554 * 329.99983 * 13 11 9 17 17 C 1.53874 * 110.03247 * 121.39118 * 2 1 3 18 18 C 1.54375 * 106.54495 * 119.34650 * 17 2 1 19 19 C 1.54887 * 104.21444 * 23.57312 * 18 17 2 20 20 C 1.54265 * 110.03085 * 238.61006 * 2 1 3 21 21 H 1.08997 * 109.47529 * 60.69859 * 1 2 3 22 22 H 1.09001 * 109.47296 * 180.69983 * 1 2 3 23 23 H 1.09003 * 109.47458 * 300.70077 * 1 2 3 24 24 H 0.97001 * 120.00384 * 239.30546 * 3 2 1 25 25 H 0.97000 * 120.00317 * 0.02562 * 8 6 4 26 26 H 0.96996 * 120.00096 * 180.02562 * 12 11 9 27 27 H 1.08994 * 110.03470 * 238.61693 * 17 2 1 28 28 H 1.08997 * 110.03176 * 0.05078 * 17 2 1 29 29 H 1.09000 * 110.46620 * 264.89734 * 18 17 2 30 30 H 1.09001 * 110.60440 * 142.32165 * 18 17 2 31 31 H 1.09002 * 110.75597 * 203.75642 * 19 18 17 32 32 H 1.09006 * 110.75500 * 80.39416 * 19 18 17 33 33 H 1.08998 * 110.48646 * 335.73461 * 20 2 1 34 34 H 1.09001 * 110.48857 * 98.24722 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0315 1.3765 0.0000 4 6 1.6977 2.2153 1.0007 5 8 0.9853 1.8286 1.9051 6 6 2.2021 3.6154 0.9976 7 8 2.9145 4.0025 0.0926 8 7 1.8679 4.4544 1.9980 9 6 2.3297 5.7349 1.9954 10 1 2.9636 6.0787 1.1914 11 6 1.9839 6.6037 3.0318 12 7 1.2146 6.1868 4.0069 13 14 2.6183 8.3606 3.0286 14 1 1.6554 9.2332 2.3094 15 1 2.7673 8.8357 4.4276 16 1 3.9361 8.4099 2.3461 17 6 2.0571 -0.7530 1.2340 18 6 2.8890 -1.9399 0.7026 19 6 3.3143 -1.4994 -0.7201 20 6 2.0584 -0.7549 -1.2372 21 1 -0.3634 0.5029 -0.8961 22 1 -0.3634 -1.0276 0.0126 23 1 -0.3634 0.5247 0.8836 24 1 2.6004 1.6854 -0.7223 25 1 1.2988 4.1456 2.7203 26 1 0.9740 6.7905 4.7269 27 1 2.6860 -0.0944 1.8329 28 1 1.2229 -1.1192 1.8324 29 1 2.2794 -2.8422 0.6563 30 1 3.7657 -2.1047 1.3290 31 1 3.5335 -2.3663 -1.3435 32 1 4.1713 -0.8272 -0.6764 33 1 1.3145 -1.4658 -1.5968 34 1 2.3267 -0.0529 -2.0267 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084234766.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:47 Heat of formation + Delta-G solvation = -88.428496 kcal Electronic energy + Delta-G solvation = -17457.052163 eV Core-core repulsion = 14582.163263 eV Total energy + Delta-G solvation = -2874.888900 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.07750 -38.21448 -36.72117 -34.35005 -33.11010 -31.36903 -30.05594 -28.77419 -25.90276 -24.91124 -22.94568 -20.86330 -19.74536 -18.81954 -18.29332 -16.93653 -16.07882 -15.33898 -15.07103 -14.60917 -14.54685 -13.96398 -13.84828 -13.34731 -12.93318 -12.80913 -12.58448 -11.93065 -11.76407 -11.55756 -11.18697 -11.15201 -11.08589 -10.92063 -10.71720 -10.52555 -10.49574 -10.38609 -10.10790 -9.70229 -8.65147 -8.20510 -8.18983 -6.65311 -3.97695 2.49536 3.16037 3.16960 3.22482 3.47713 4.07911 4.29878 4.49241 4.64203 4.85087 5.09308 5.20916 5.30533 5.42237 5.47850 5.54380 5.62825 5.76437 5.85998 5.89883 5.94195 6.05498 6.12149 6.16185 6.29199 6.44476 6.51931 6.99596 7.32595 7.74212 7.95129 8.36496 8.69016 8.98946 9.34504 9.87646 10.49654 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.049287 B = 0.005285 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 567.966668 B = 5296.864859 C = 5466.173110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.171 3.829 3 N -0.706 5.706 4 C 0.515 3.485 5 O -0.542 6.542 6 C 0.393 3.607 7 O -0.599 6.599 8 N -0.500 5.500 9 C -0.306 4.306 10 H 0.112 0.888 11 C 0.031 3.969 12 N -0.870 5.870 13 Si 0.939 3.061 14 H -0.274 1.274 15 H -0.280 1.280 16 H -0.265 1.265 17 C -0.123 4.123 18 C -0.125 4.125 19 C -0.125 4.125 20 C -0.125 4.125 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.081 0.919 24 H 0.407 0.593 25 H 0.405 0.595 26 H 0.280 0.720 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.668 -12.678 -6.266 14.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.085 3.915 3 N -0.360 5.360 4 C 0.299 3.701 5 O -0.419 6.419 6 C 0.178 3.822 7 O -0.488 6.488 8 N -0.135 5.135 9 C -0.437 4.437 10 H 0.129 0.871 11 C -0.176 4.176 12 N -0.508 5.508 13 Si 0.764 3.236 14 H -0.199 1.199 15 H -0.205 1.205 16 H -0.189 1.189 17 C -0.162 4.162 18 C -0.162 4.162 19 C -0.163 4.163 20 C -0.163 4.163 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.100 0.900 24 H 0.243 0.757 25 H 0.240 0.760 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.527 -12.621 -6.007 13.988 hybrid contribution 0.143 0.823 0.177 0.854 sum 0.670 -11.798 -5.830 13.177 Atomic orbital electron populations 1.22257 0.94239 1.01865 1.03596 1.20940 0.94060 0.81391 0.95107 1.45927 1.52551 1.10875 1.26640 1.20601 0.80298 0.87461 0.81695 1.90648 1.37286 1.78061 1.35938 1.19065 0.89962 0.86233 0.86969 1.90575 1.42977 1.77330 1.37879 1.41562 1.41064 1.10315 1.20519 1.19872 1.28870 0.86101 1.08845 0.87056 1.25575 0.96044 1.01180 0.94782 1.69483 1.33048 1.37656 1.10613 0.85728 0.79603 0.80536 0.77728 1.19917 1.20538 1.18929 1.22539 0.99930 0.96582 0.97099 1.22401 0.99566 0.97973 0.96301 1.22513 0.97695 0.99776 0.96297 1.22674 0.97900 0.99175 0.96558 0.92796 0.92163 0.90036 0.75683 0.76012 0.90964 0.91018 0.91004 0.91765 0.91735 0.91542 0.91215 0.90237 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 8.07 37.16 0.30 -1.97 16 2 C 0.17 2.41 0.94 -130.70 -0.12 2.29 16 3 N -0.71 -12.21 5.06 -47.20 -0.24 -12.45 16 4 C 0.51 11.13 7.01 -11.88 -0.08 11.05 16 5 O -0.54 -12.34 13.66 5.42 0.07 -12.27 16 6 C 0.39 9.98 7.82 -11.88 -0.09 9.89 16 7 O -0.60 -16.20 16.03 5.36 0.09 -16.12 16 8 N -0.50 -13.48 5.25 -11.59 -0.06 -13.54 16 9 C -0.31 -8.51 9.67 -15.14 -0.15 -8.65 16 10 H 0.11 3.16 7.15 -52.49 -0.38 2.78 16 11 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 12 N -0.87 -23.45 13.03 55.53 0.72 -22.72 16 13 Si 0.94 20.20 29.56 -169.99 -5.02 15.18 16 14 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 15 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 16 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 17 C -0.12 -1.73 5.33 -25.56 -0.14 -1.86 16 18 C -0.12 -1.35 6.83 -25.02 -0.17 -1.52 16 19 C -0.13 -1.26 6.91 -24.74 -0.17 -1.44 16 20 C -0.13 -1.35 6.01 -25.07 -0.15 -1.50 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.08 1.39 6.14 -51.93 -0.32 1.07 16 24 H 0.41 6.74 7.70 -40.82 -0.31 6.42 16 25 H 0.40 10.96 7.35 -40.82 -0.30 10.66 16 26 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 27 H 0.07 1.19 7.30 -51.93 -0.38 0.82 16 28 H 0.07 1.01 7.67 -51.93 -0.40 0.61 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.74 7.85 -51.93 -0.41 0.33 16 34 H 0.07 0.76 7.73 -51.93 -0.40 0.36 16 LS Contribution 284.04 15.07 4.28 4.28 Total: -1.00 -29.99 284.04 -5.60 -35.58 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -4.57 Total: 15.05 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -0.87 Total: 7.00 kcal Atomic # 7 Polarization: -49.13 SS G_CDS: 0.42 Total: -48.71 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: 0.16 Total: -28.38 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -29.99 -5.60 -35.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084234766.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.847 kcal (2) G-P(sol) polarization free energy of solvation -29.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds