Wall clock time and date at job start Mon Mar 30 2020 04:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47139 * 2 1 4 4 C 1.50701 * 109.46927 * 119.99549 * 2 1 3 5 5 H 1.08001 * 119.99605 * 95.21524 * 4 2 1 6 6 C 1.37878 * 120.00366 * 275.21367 * 4 2 1 7 7 N 1.31511 * 119.99660 * 355.16426 * 6 4 2 8 8 Si 1.86798 * 119.99972 * 175.16013 * 6 4 2 9 9 H 1.48502 * 109.47059 * 90.00570 * 8 6 4 10 10 H 1.48496 * 109.47414 * 329.99917 * 8 6 4 11 11 H 1.48503 * 109.46816 * 209.99861 * 8 6 4 12 12 N 1.46901 * 109.46946 * 239.99678 * 2 1 3 13 13 C 1.46897 * 111.00108 * 85.00172 * 12 2 1 14 14 H 1.09007 * 109.51883 * 325.12613 * 13 12 2 15 15 C 1.53236 * 109.52344 * 204.99912 * 13 12 2 16 16 C 1.53245 * 108.56822 * 184.48166 * 15 13 12 17 17 C 1.50588 * 109.16203 * 55.61052 * 16 15 13 18 18 O 1.21229 * 119.35741 * 150.88835 * 17 16 15 19 19 N 1.34136 * 121.27968 * 330.90896 * 17 16 15 20 20 C 1.46506 * 118.70501 * 180.54633 * 19 17 16 21 21 C 1.34142 * 122.59079 * 0.54109 * 19 17 16 22 22 O 1.21227 * 119.36263 * 179.45159 * 21 19 17 23 23 H 1.09001 * 109.47104 * 295.01781 * 1 2 3 24 24 H 1.08998 * 109.47298 * 55.02164 * 1 2 3 25 25 H 1.09006 * 109.47141 * 175.01974 * 1 2 3 26 26 H 0.96998 * 120.00347 * 5.17307 * 7 6 4 27 27 H 1.00896 * 110.99892 * 321.04250 * 12 2 1 28 28 H 1.09006 * 109.62199 * 304.20322 * 15 13 12 29 29 H 1.08995 * 109.62237 * 64.56937 * 15 13 12 30 30 H 1.08995 * 109.52611 * 175.51995 * 16 15 13 31 31 H 1.09003 * 109.51925 * 295.70460 * 16 15 13 32 32 H 1.09001 * 109.46737 * 359.97438 * 20 19 17 33 33 H 1.08997 * 109.47234 * 120.00122 * 20 19 17 34 34 H 1.09001 * 109.46687 * 239.99877 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.2924 -1.7574 1.1812 6 6 2.1598 -0.0236 2.4193 7 7 1.9346 1.2715 2.4578 8 14 2.6524 -0.9327 3.9750 9 1 4.1319 -0.9305 4.1022 10 1 2.1635 -2.3332 3.9057 11 1 2.0533 -0.2570 5.1539 12 7 2.0197 -0.6926 -1.1994 13 6 2.0825 0.2224 -2.3469 14 1 1.2592 0.9346 -2.2903 15 6 1.9770 -0.5800 -3.6481 16 6 2.1574 0.3796 -4.8292 17 6 3.4639 1.1124 -4.6755 18 8 4.0552 1.4871 -5.6653 19 7 3.9863 1.3583 -3.4648 20 6 5.2548 2.0865 -3.3804 21 6 3.3931 0.9638 -2.3282 22 8 3.9223 1.2087 -1.2654 23 1 -0.3633 0.4346 0.9313 24 1 -0.3634 0.5891 -0.8420 25 1 -0.3634 -1.0238 -0.0892 26 1 1.6065 1.7305 1.6688 27 1 1.4496 -1.4980 -1.4099 28 1 2.7566 -1.3415 -3.6728 29 1 0.9983 -1.0562 -3.7061 30 1 2.1645 -0.1864 -5.7606 31 1 1.3369 1.0970 -4.8442 32 1 5.6005 2.3316 -4.3847 33 1 5.1094 3.0048 -2.8115 34 1 5.9984 1.4644 -2.8823 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084406956.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:33 Heat of formation + Delta-G solvation = -66.179986 kcal Electronic energy + Delta-G solvation = -17904.792374 eV Core-core repulsion = 15030.868242 eV Total energy + Delta-G solvation = -2873.924132 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.41253 -38.66812 -36.59672 -35.11775 -34.04871 -31.92778 -28.98187 -27.52938 -26.05719 -24.56173 -23.13058 -22.54624 -20.66711 -18.33928 -17.18225 -16.97353 -16.61595 -16.39846 -15.11301 -14.57542 -14.37078 -14.19023 -13.75356 -13.51629 -13.03923 -12.89431 -12.67176 -12.46894 -12.25582 -11.94482 -11.62580 -11.22019 -11.14478 -10.82047 -10.66005 -10.17259 -10.10247 -10.00172 -9.66613 -9.50165 -8.65186 -8.21240 -7.54164 -6.26693 -3.94573 1.76201 2.69655 3.05225 3.49272 3.52822 3.67749 4.04548 4.47955 4.57280 4.64893 4.72620 5.14054 5.22400 5.33424 5.40239 5.48810 5.50336 5.54876 5.63387 5.75456 5.87414 5.93020 6.27909 6.39434 6.65847 6.90468 7.15376 7.23135 7.58104 7.76388 8.14086 8.25943 8.34548 8.61501 8.96603 9.74758 11.12027 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.036590 B = 0.006797 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.060322 B = 4118.406661 C = 4555.794269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.194 3.806 3 H 0.050 0.950 4 C -0.569 4.569 5 H 0.052 0.948 6 C 0.019 3.981 7 N -0.914 5.914 8 Si 1.073 2.927 9 H -0.289 1.289 10 H -0.289 1.289 11 H -0.287 1.287 12 N -0.656 5.656 13 C 0.069 3.931 14 H 0.077 0.923 15 C -0.126 4.126 16 C -0.138 4.138 17 C 0.524 3.476 18 O -0.520 6.520 19 N -0.571 5.571 20 C 0.062 3.938 21 C 0.512 3.488 22 O -0.449 6.449 23 H 0.055 0.945 24 H 0.014 0.986 25 H 0.040 0.960 26 H 0.267 0.733 27 H 0.336 0.664 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.170 -1.717 -13.702 13.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.087 3.913 3 H 0.067 0.933 4 C -0.608 4.608 5 H 0.070 0.930 6 C -0.185 4.185 7 N -0.550 5.550 8 Si 0.901 3.099 9 H -0.216 1.216 10 H -0.215 1.215 11 H -0.212 1.212 12 N -0.288 5.288 13 C -0.045 4.045 14 H 0.095 0.905 15 C -0.164 4.164 16 C -0.178 4.178 17 C 0.315 3.685 18 O -0.395 6.395 19 N -0.316 5.316 20 C -0.079 4.079 21 C 0.299 3.701 22 O -0.315 6.315 23 H 0.075 0.925 24 H 0.033 0.967 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.155 0.845 28 H 0.103 0.897 29 H 0.109 0.891 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.452 -1.106 -11.799 11.859 hybrid contribution -1.284 -0.042 -1.820 2.228 sum -0.832 -1.149 -13.618 13.692 Atomic orbital electron populations 1.22640 1.01592 0.99222 0.99489 1.19529 0.88336 0.96047 0.87428 0.93263 1.21720 1.47348 0.98050 0.93698 0.92987 1.25757 0.95036 0.96025 1.01711 1.70747 1.42795 1.08186 1.33302 0.83501 0.76563 0.74535 0.75259 1.21554 1.21543 1.21240 1.60643 1.58636 1.07959 1.01576 1.21506 0.93040 0.96496 0.93453 0.90541 1.21946 1.04671 0.98226 0.91533 1.21887 0.94638 0.99740 1.01576 1.20940 0.87288 0.78065 0.82242 1.90687 1.61370 1.50341 1.37144 1.46663 1.24151 1.52757 1.07999 1.21873 0.84662 0.97290 1.04073 1.21265 0.87374 0.78769 0.82666 1.90828 1.62630 1.49185 1.28881 0.92548 0.96732 0.94107 0.92165 0.84495 0.89676 0.89082 0.86966 0.87381 0.88842 0.90908 0.90785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.62 9.14 37.16 0.34 -3.28 16 2 C 0.19 4.71 1.78 -68.86 -0.12 4.58 16 3 H 0.05 1.36 5.37 -51.93 -0.28 1.08 16 4 C -0.57 -15.96 8.64 -34.44 -0.30 -16.26 16 5 H 0.05 1.47 7.82 -52.49 -0.41 1.06 16 6 C 0.02 0.54 5.45 -17.82 -0.10 0.44 16 7 N -0.91 -27.97 13.63 55.43 0.76 -27.21 16 8 Si 1.07 25.82 29.91 -169.99 -5.08 20.74 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 N -0.66 -13.08 5.84 -102.10 -0.60 -13.68 16 13 C 0.07 1.11 2.56 -68.80 -0.18 0.93 16 14 H 0.08 1.20 7.16 -51.92 -0.37 0.82 16 15 C -0.13 -1.37 5.35 -26.48 -0.14 -1.51 16 16 C -0.14 -1.34 6.07 -27.81 -0.17 -1.51 16 17 C 0.52 7.15 7.48 -11.33 -0.08 7.07 16 18 O -0.52 -8.18 16.19 5.60 0.09 -8.09 16 19 N -0.57 -8.82 2.93 -123.17 -0.36 -9.18 16 20 C 0.06 0.88 9.81 59.85 0.59 1.47 16 21 C 0.51 9.43 7.26 -11.32 -0.08 9.35 16 22 O -0.45 -10.58 15.18 5.60 0.09 -10.49 16 23 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 24 H 0.01 0.26 7.50 -51.93 -0.39 -0.13 16 25 H 0.04 0.80 8.04 -51.93 -0.42 0.38 16 26 H 0.27 8.16 6.66 -40.82 -0.27 7.89 16 27 H 0.34 5.86 8.04 -39.29 -0.32 5.55 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.20 6.73 -51.93 -0.35 0.85 16 33 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 282.86 15.07 4.26 4.26 Total: -1.00 -34.39 282.86 -5.65 -40.04 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -4.56 Total: 2.34 kcal Atomic # 6 Polarization: 1.52 SS G_CDS: -0.24 Total: 1.27 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.20 Total: -50.07 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.18 Total: -18.58 kcal Atomic # 14 Polarization: 25.82 SS G_CDS: -5.08 Total: 20.74 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -34.39 -5.65 -40.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084406956.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.141 kcal (2) G-P(sol) polarization free energy of solvation -34.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds