Wall clock time and date at job start Mon Mar 30 2020 04:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47225 * 2 1 4 4 C 1.50701 * 109.47325 * 239.99728 * 2 1 3 5 5 H 1.07994 * 120.00093 * 240.00303 * 4 2 1 6 6 C 1.37884 * 119.99799 * 60.00099 * 4 2 1 7 7 N 1.31516 * 119.99617 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00130 * 180.02562 * 6 4 2 9 9 H 1.48490 * 109.47152 * 59.99498 * 8 6 4 10 10 H 1.48498 * 109.47064 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46733 * 299.99894 * 8 6 4 12 12 N 1.46902 * 109.47041 * 120.00003 * 2 1 3 13 13 C 1.46897 * 111.00019 * 271.29181 * 12 2 1 14 14 H 1.09001 * 109.57153 * 35.15943 * 13 12 2 15 15 C 1.53240 * 109.52949 * 275.00270 * 13 12 2 16 16 C 1.53245 * 108.72490 * 184.38639 * 15 13 12 17 17 C 1.50997 * 108.95513 * 55.51608 * 16 15 13 18 18 O 1.21226 * 119.27008 * 151.00705 * 17 16 15 19 19 N 1.34139 * 121.36408 * 331.06101 * 17 16 15 20 20 C 1.46497 * 118.70314 * 180.52128 * 19 17 16 21 21 C 1.34139 * 122.58900 * 0.49114 * 19 17 16 22 22 O 1.21227 * 119.36040 * 179.45839 * 21 19 17 23 23 H 1.08999 * 109.46982 * 178.13621 * 1 2 3 24 24 H 1.08996 * 109.46631 * 298.13691 * 1 2 3 25 25 H 1.08998 * 109.47027 * 58.13493 * 1 2 3 26 26 H 0.97005 * 119.99479 * 180.02562 * 7 6 4 27 27 H 1.00897 * 110.99854 * 35.25029 * 12 2 1 28 28 H 1.09006 * 109.61710 * 304.20694 * 15 13 12 29 29 H 1.09004 * 109.62021 * 64.56657 * 15 13 12 30 30 H 1.09000 * 109.52235 * 175.60730 * 16 15 13 31 31 H 1.08992 * 109.51910 * 295.80074 * 16 15 13 32 32 H 1.09007 * 109.46973 * 269.97416 * 20 19 17 33 33 H 1.08994 * 109.47497 * 29.97199 * 20 19 17 34 34 H 1.09001 * 109.47589 * 149.97803 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3214 -1.1204 -4.0080 9 1 1.8260 -2.5202 -4.0077 10 1 1.8270 -0.4199 -5.2204 11 1 3.8065 -1.1209 -4.0081 12 7 2.0197 -0.6925 1.1995 13 6 2.1660 0.2415 2.3237 14 1 1.3772 0.9925 2.2795 15 6 3.5330 0.9294 2.2437 16 6 3.7113 1.8151 3.4815 17 6 3.5268 0.9706 4.7196 18 8 4.1087 1.2769 5.7380 19 7 2.7338 -0.1112 4.7150 20 6 2.5880 -0.8820 5.9522 21 6 2.0685 -0.5148 3.6223 22 8 1.3751 -1.5074 3.6814 23 1 -0.3633 -1.0271 -0.0334 24 1 -0.3632 0.4846 0.9062 25 1 -0.3633 0.5425 -0.8728 26 1 0.7090 1.1614 -3.4844 27 1 1.4149 -1.4620 1.4449 28 1 4.3206 0.1763 2.2159 29 1 3.5817 1.5433 1.3442 30 1 4.7107 2.2501 3.4772 31 1 2.9666 2.6109 3.4702 32 1 3.3517 -1.6589 5.9885 33 1 2.7036 -0.2186 6.8093 34 1 1.6002 -1.3421 5.9795 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084406957.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:36 Heat of formation + Delta-G solvation = -87.998670 kcal Electronic energy + Delta-G solvation = -17685.930021 eV Core-core repulsion = 14811.059759 eV Total energy + Delta-G solvation = -2874.870261 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.71926 -40.08889 -38.04566 -36.45523 -35.39475 -33.63411 -30.53927 -28.64850 -27.36505 -27.11736 -24.24088 -23.90446 -21.87785 -19.60332 -18.80219 -18.27336 -17.91101 -17.60726 -16.71587 -16.31801 -15.83850 -15.66137 -15.33838 -14.63437 -14.55822 -14.13163 -13.88599 -13.64841 -13.50275 -13.37629 -12.86584 -12.79773 -12.70456 -12.43704 -12.15282 -12.03359 -11.93510 -11.33027 -11.16284 -10.99509 -10.86115 -10.43615 -9.14453 -8.06892 -6.15944 0.41570 1.44763 1.48191 1.48732 1.56359 1.70305 2.47426 2.87159 3.22818 3.41376 3.59186 3.81907 4.10080 4.17990 4.28677 4.36712 4.42341 4.46094 4.72309 4.73782 4.85111 4.90031 4.96788 5.12344 5.23175 5.38561 5.72117 5.81100 5.86372 6.26062 6.29655 6.57170 6.63821 6.69711 6.95003 7.52986 8.98593 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.040784 B = 0.005900 C = 0.005623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.380489 B = 4744.723452 C = 4977.998773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.219 3.781 3 H 0.027 0.973 4 C -0.514 4.514 5 H 0.053 0.947 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.673 5.673 13 C 0.066 3.934 14 H 0.088 0.912 15 C -0.104 4.104 16 C -0.128 4.128 17 C 0.527 3.473 18 O -0.531 6.531 19 N -0.568 5.568 20 C 0.059 3.941 21 C 0.531 3.469 22 O -0.524 6.524 23 H 0.025 0.975 24 H 0.026 0.974 25 H 0.066 0.934 26 H 0.261 0.739 27 H 0.338 0.662 28 H 0.076 0.924 29 H 0.096 0.904 30 H 0.138 0.862 31 H 0.133 0.867 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.648 2.499 12.089 12.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.111 3.889 3 H 0.045 0.955 4 C -0.553 4.553 5 H 0.071 0.929 6 C -0.184 4.184 7 N -0.559 5.559 8 Si 0.782 3.218 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.306 5.306 13 C -0.047 4.047 14 H 0.106 0.894 15 C -0.143 4.143 16 C -0.168 4.168 17 C 0.319 3.681 18 O -0.407 6.407 19 N -0.311 5.311 20 C -0.082 4.082 21 C 0.322 3.678 22 O -0.397 6.397 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.158 0.842 28 H 0.095 0.905 29 H 0.114 0.886 30 H 0.156 0.844 31 H 0.151 0.849 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.170 2.283 12.329 13.213 hybrid contribution -0.972 -0.489 -0.673 1.279 sum 3.198 1.794 11.656 12.219 Atomic orbital electron populations 1.22292 1.00254 0.99309 1.00063 1.19055 0.89761 0.93608 0.86485 0.95481 1.21353 1.30542 1.12490 0.90888 0.92918 1.25595 0.95458 0.95832 1.01508 1.69971 1.37809 1.24031 1.24055 0.85653 0.78755 0.78520 0.78891 1.20306 1.21088 1.19786 1.60868 1.56503 1.10471 1.02742 1.21769 1.00837 0.95100 0.87026 0.89425 1.21699 0.94771 0.99011 0.98785 1.22108 1.08381 0.97997 0.88291 1.21686 0.75702 0.79202 0.91503 1.90702 1.45369 1.69236 1.35353 1.46541 1.43218 1.27950 1.13363 1.22025 1.04154 0.96869 0.85149 1.21238 0.76819 0.84169 0.85615 1.90674 1.38441 1.26121 1.84512 0.95619 0.95504 0.91509 0.92968 0.84232 0.90524 0.88583 0.84415 0.84905 0.90631 0.88522 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.36 8.90 71.98 0.64 -6.71 16 2 C 0.22 10.22 2.37 44.17 0.10 10.32 16 3 H 0.03 1.32 7.17 -2.38 -0.02 1.31 16 4 C -0.51 -27.22 8.84 25.60 0.23 -26.99 16 5 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 6 C 0.01 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -50.29 11.34 21.45 0.24 -50.05 16 8 Si 0.96 42.63 29.54 68.60 2.03 44.65 16 9 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 N -0.67 -26.92 6.05 -476.91 -2.89 -29.80 16 13 C 0.07 2.05 2.54 44.22 0.11 2.16 16 14 H 0.09 2.63 7.40 -2.39 -0.02 2.62 16 15 C -0.10 -2.63 5.53 30.76 0.17 -2.46 16 16 C -0.13 -2.38 6.11 30.02 0.18 -2.20 16 17 C 0.53 12.71 7.49 87.85 0.66 13.37 16 18 O -0.53 -15.03 16.45 -2.86 -0.05 -15.07 16 19 N -0.57 -14.73 2.93 -780.63 -2.28 -17.02 16 20 C 0.06 1.31 9.98 127.77 1.27 2.58 16 21 C 0.53 16.22 7.29 87.72 0.64 16.86 16 22 O -0.52 -18.90 15.13 -2.87 -0.04 -18.94 16 23 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.03 1.07 7.70 -2.39 -0.02 1.05 16 25 H 0.07 3.41 6.12 -2.39 -0.01 3.40 16 26 H 0.26 13.74 8.31 -92.70 -0.77 12.96 16 27 H 0.34 14.16 7.09 -89.70 -0.64 13.53 16 28 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 29 H 0.10 2.56 7.55 -2.38 -0.02 2.54 16 30 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.10 1.94 7.29 -2.39 -0.02 1.92 16 34 H 0.09 1.94 7.29 -2.39 -0.02 1.92 16 Total: -1.00 -61.88 281.54 1.94 -59.94 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.47 Total: 18.13 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: 4.46 Total: 8.16 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -4.93 Total: -96.87 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.09 Total: -34.02 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.65 kcal Total: -61.88 1.94 -59.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084406957.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.060 kcal (2) G-P(sol) polarization free energy of solvation -61.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds