Wall clock time and date at job start Mon Mar 30 2020 04:19:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.46849 * 2 1 4 4 C 1.50691 * 109.47331 * 119.99940 * 2 1 3 5 5 H 1.08005 * 120.00157 * 120.00093 * 4 2 1 6 6 C 1.37883 * 120.00159 * 300.00355 * 4 2 1 7 7 N 1.31514 * 120.00204 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 119.99715 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47312 * 90.00290 * 8 6 4 10 10 H 1.48510 * 109.46820 * 210.00104 * 8 6 4 11 11 H 1.48499 * 109.47242 * 329.99744 * 8 6 4 12 12 N 1.46902 * 109.47464 * 240.00427 * 2 1 3 13 13 C 1.46893 * 111.00343 * 153.82904 * 12 2 1 14 14 H 1.09000 * 109.52393 * 31.98744 * 13 12 2 15 15 C 1.53248 * 109.52277 * 152.17515 * 13 12 2 16 16 C 1.53220 * 108.58024 * 175.50824 * 15 13 12 17 17 C 1.50590 * 109.18015 * 304.42878 * 16 15 13 18 18 O 1.21226 * 119.35774 * 209.05930 * 17 16 15 19 19 N 1.34140 * 121.27907 * 29.04625 * 17 16 15 20 20 C 1.46502 * 118.70526 * 179.45250 * 19 17 16 21 21 C 1.34143 * 122.59186 * 359.47102 * 19 17 16 22 22 O 1.21223 * 119.36139 * 180.54864 * 21 19 17 23 23 H 1.09003 * 109.47156 * 186.04037 * 1 2 3 24 24 H 1.08996 * 109.47524 * 306.04488 * 1 2 3 25 25 H 1.09001 * 109.47207 * 66.04158 * 1 2 3 26 26 H 0.96998 * 120.00223 * 180.02562 * 7 6 4 27 27 H 1.00899 * 110.99689 * 277.78437 * 12 2 1 28 28 H 1.09001 * 109.61965 * 295.24475 * 15 13 12 29 29 H 1.09000 * 109.61756 * 55.79488 * 15 13 12 30 30 H 1.08998 * 109.53785 * 184.50127 * 16 15 13 31 31 H 1.08997 * 109.53937 * 64.35364 * 16 15 13 32 32 H 1.09001 * 109.47366 * 270.01930 * 20 19 17 33 33 H 1.08998 * 109.47204 * 30.01904 * 20 19 17 34 34 H 1.08996 * 109.47236 * 150.01828 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6992 -0.2393 2.4827 7 7 2.1380 -0.8590 3.5565 8 14 0.6258 1.2798 2.6541 9 1 -0.8021 0.8744 2.6993 10 1 0.9771 1.9953 3.9071 11 1 0.8490 2.1773 1.4923 12 7 2.0197 -0.6924 -1.1995 13 6 3.3556 -0.2116 -1.5764 14 1 3.9062 0.0741 -0.6801 15 6 4.1118 -1.3239 -2.3108 16 6 5.4550 -0.7655 -2.7921 17 6 5.2088 0.4572 -3.6359 18 8 5.9937 0.7405 -4.5152 19 7 4.1375 1.2388 -3.4336 20 6 3.9596 2.4215 -4.2797 21 6 3.2230 0.9805 -2.4869 22 8 2.2716 1.7212 -2.3616 23 1 -0.3633 -1.0220 0.1081 24 1 -0.3634 0.6047 0.8309 25 1 -0.3634 0.4173 -0.9391 26 1 1.9034 -0.5278 4.4375 27 1 2.0200 -1.6924 -1.0649 28 1 4.2846 -2.1590 -1.6319 29 1 3.5274 -1.6599 -3.1673 30 1 5.9717 -1.5197 -3.3856 31 1 6.0675 -0.4968 -1.9314 32 1 4.4526 3.2766 -3.8174 33 1 4.3978 2.2360 -5.2603 34 1 2.8959 2.6319 -4.3910 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084406959.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:39 Heat of formation + Delta-G solvation = -60.139866 kcal Electronic energy + Delta-G solvation = -17911.394766 eV Core-core repulsion = 15037.732553 eV Total energy + Delta-G solvation = -2873.662213 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.43526 -38.69822 -36.54965 -35.14051 -33.98154 -32.00553 -29.73461 -27.58668 -26.09484 -24.97055 -23.12067 -22.57600 -20.20961 -18.21770 -17.36306 -16.97953 -16.74282 -16.35705 -15.08614 -14.92586 -14.46146 -14.29135 -14.18892 -13.36596 -12.94651 -12.84008 -12.69545 -12.50191 -12.31183 -12.08495 -11.99862 -11.35739 -11.22656 -10.82342 -10.50727 -10.15425 -10.13237 -9.75834 -9.57937 -9.54882 -9.30821 -8.65454 -7.65609 -6.19837 -4.22018 1.73029 2.66648 2.99865 3.25188 3.35848 3.40575 4.06413 4.33963 4.58015 4.67849 4.79616 5.14581 5.22916 5.29546 5.34584 5.39313 5.54758 5.58567 5.64795 5.73765 5.95754 6.07478 6.43635 6.55063 6.73896 6.99383 7.12766 7.20612 7.43964 7.55292 7.82203 8.04747 8.19167 8.36012 8.79704 9.44134 10.92603 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.034211 B = 0.007251 C = 0.006650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.260505 B = 3860.728408 C = 4209.390385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.180 3.820 3 H 0.039 0.961 4 C -0.553 4.553 5 H 0.074 0.926 6 C 0.077 3.923 7 N -0.896 5.896 8 Si 0.887 3.113 9 H -0.277 1.277 10 H -0.298 1.298 11 H -0.264 1.264 12 N -0.662 5.662 13 C 0.074 3.926 14 H 0.099 0.901 15 C -0.126 4.126 16 C -0.139 4.139 17 C 0.525 3.475 18 O -0.518 6.518 19 N -0.571 5.571 20 C 0.063 3.937 21 C 0.523 3.477 22 O -0.476 6.476 23 H 0.049 0.951 24 H 0.036 0.964 25 H 0.039 0.961 26 H 0.265 0.735 27 H 0.347 0.653 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.709 0.852 -12.087 13.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.071 3.929 3 H 0.057 0.943 4 C -0.592 4.592 5 H 0.092 0.908 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.718 3.282 9 H -0.204 1.204 10 H -0.225 1.225 11 H -0.189 1.189 12 N -0.294 5.294 13 C -0.040 4.040 14 H 0.116 0.884 15 C -0.164 4.164 16 C -0.179 4.179 17 C 0.316 3.684 18 O -0.392 6.392 19 N -0.316 5.316 20 C -0.078 4.078 21 C 0.311 3.689 22 O -0.345 6.345 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.075 0.925 27 H 0.167 0.833 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.084 0.916 33 H 0.103 0.897 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.235 1.807 -12.688 13.498 hybrid contribution -0.080 0.452 1.050 1.146 sum 4.155 2.259 -11.638 12.563 Atomic orbital electron populations 1.21975 0.98248 1.00480 0.98640 1.19655 0.92024 0.94969 0.86219 0.94272 1.21725 1.33281 1.14161 0.90030 0.90762 1.24952 0.95323 0.96619 0.95802 1.69903 1.45129 1.40251 0.98048 0.86844 0.80752 0.83671 0.76974 1.20390 1.22538 1.18850 1.60455 1.19196 1.10138 1.39650 1.21453 0.93867 0.91865 0.96834 0.88368 1.21952 0.94042 0.98690 1.01684 1.21906 1.00029 0.94967 1.01026 1.21015 0.79443 0.84290 0.83680 1.90697 1.44066 1.72340 1.32129 1.46650 1.24188 1.26696 1.34040 1.21848 1.03988 0.86612 0.95397 1.21431 0.80698 0.87390 0.79378 1.90683 1.29185 1.47688 1.66964 0.93138 0.94533 0.94172 0.92532 0.83272 0.88528 0.90008 0.86942 0.87024 0.91571 0.89720 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.91 37.16 0.33 -2.70 16 2 C 0.18 4.14 1.66 -68.87 -0.11 4.02 16 3 H 0.04 0.98 6.16 -51.93 -0.32 0.66 16 4 C -0.55 -14.50 8.92 -34.44 -0.31 -14.80 16 5 H 0.07 2.04 7.97 -52.48 -0.42 1.62 16 6 C 0.08 2.13 5.45 -17.82 -0.10 2.03 16 7 N -0.90 -26.37 13.96 55.43 0.77 -25.60 16 8 Si 0.89 21.90 24.31 -169.99 -4.13 17.77 16 9 H -0.28 -6.69 6.92 56.52 0.39 -6.30 16 10 H -0.30 -7.34 7.11 56.52 0.40 -6.94 16 11 H -0.26 -6.46 6.53 56.52 0.37 -6.09 16 12 N -0.66 -12.48 5.84 -102.10 -0.60 -13.07 16 13 C 0.07 1.19 2.53 -68.80 -0.17 1.01 16 14 H 0.10 1.72 7.66 -51.93 -0.40 1.32 16 15 C -0.13 -1.43 5.32 -26.49 -0.14 -1.57 16 16 C -0.14 -1.42 6.07 -27.82 -0.17 -1.58 16 17 C 0.53 7.02 7.48 -11.32 -0.08 6.93 16 18 O -0.52 -8.03 16.44 5.60 0.09 -7.93 16 19 N -0.57 -8.25 2.93 -123.17 -0.36 -8.61 16 20 C 0.06 0.80 10.00 59.85 0.60 1.40 16 21 C 0.52 8.84 7.27 -11.32 -0.08 8.76 16 22 O -0.48 -9.71 14.98 5.61 0.08 -9.62 16 23 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.04 0.84 3.46 -51.93 -0.18 0.66 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 27 H 0.35 6.11 7.98 -39.29 -0.31 5.80 16 28 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.99 7.28 -51.93 -0.38 0.61 16 34 H 0.09 1.12 7.28 -51.93 -0.38 0.74 16 LS Contribution 275.71 15.07 4.15 4.15 Total: -1.00 -31.99 275.71 -4.75 -36.74 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -4.52 Total: 2.68 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: -0.24 Total: 3.49 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: -0.18 Total: -47.28 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: 0.18 Total: -17.56 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.13 Total: 17.77 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.99 -4.75 -36.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084406959.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.402 kcal (2) G-P(sol) polarization free energy of solvation -31.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds