Wall clock time and date at job start Mon Mar 30 2020 03:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47428 * 2 1 4 4 H 1.08994 * 109.51112 * 305.09396 * 3 2 1 5 5 N 1.47076 * 109.50519 * 65.22961 * 3 2 1 6 6 C 1.47063 * 110.36107 * 176.88471 * 5 3 2 7 7 C 1.50659 * 109.15141 * 302.85263 * 6 5 3 8 8 O 1.21222 * 119.67707 * 209.04627 * 7 6 5 9 9 N 1.34451 * 120.64849 * 29.29281 * 7 6 5 10 10 C 1.46499 * 119.31626 * 179.27633 * 9 7 6 11 11 C 1.53004 * 109.47270 * 269.73100 * 10 9 7 12 12 C 1.50699 * 109.46843 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00516 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99783 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99707 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99956 * 180.27458 * 14 12 11 17 17 H 1.48503 * 109.47407 * 269.72718 * 16 14 12 18 18 H 1.48505 * 109.47281 * 29.72474 * 16 14 12 19 19 H 1.48501 * 109.47274 * 149.72572 * 16 14 12 20 20 C 1.34446 * 121.36327 * 359.00728 * 9 7 6 21 21 O 1.21222 * 119.67690 * 180.76634 * 20 9 7 22 22 H 1.09002 * 109.46927 * 299.99718 * 1 2 3 23 23 H 1.09001 * 109.47183 * 59.99655 * 1 2 3 24 24 H 1.08995 * 109.47368 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46927 * 240.00282 * 2 1 3 26 26 H 1.09001 * 109.47154 * 120.00900 * 2 1 3 27 27 H 1.00902 * 110.99929 * 53.38702 * 5 3 2 28 28 H 1.09007 * 109.50943 * 62.97822 * 6 5 3 29 29 H 1.09002 * 109.50965 * 183.11261 * 6 5 3 30 30 H 1.09006 * 109.46638 * 149.73391 * 10 9 7 31 31 H 1.08997 * 109.47029 * 29.73498 * 10 9 7 32 32 H 1.09001 * 109.46361 * 60.00590 * 11 10 9 33 33 H 1.08997 * 109.46991 * 300.00480 * 11 10 9 34 34 H 0.97005 * 119.99656 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6046 1.9826 -0.8406 5 7 1.6562 2.0991 1.2588 6 6 2.2010 3.4641 1.3108 7 6 3.6981 3.4051 1.1534 8 8 4.3896 4.2588 1.6657 9 7 4.2746 2.4175 0.4462 10 6 5.7319 2.3973 0.2985 11 6 6.1284 3.1788 -0.9557 12 6 7.6276 3.1575 -1.1078 13 1 8.2367 2.6388 -0.3823 14 6 8.2216 3.8011 -2.1727 15 7 7.4800 4.4339 -3.0553 16 14 10.0793 3.7681 -2.3656 17 1 10.6711 4.9329 -1.6595 18 1 10.6153 2.5117 -1.7830 19 1 10.4286 3.8337 -3.8074 20 6 3.5416 1.4452 -0.1238 21 8 4.0942 0.5617 -0.7431 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5140 0.8899 27 1 1.9584 1.5586 2.0554 28 1 1.7698 4.0591 0.5056 29 1 1.9555 3.9177 2.2710 30 1 6.0736 1.3662 0.2073 31 1 6.1921 2.8565 1.1734 32 1 5.7868 4.2099 -0.8643 33 1 5.6681 2.7196 -1.8305 34 1 7.8980 4.8870 -3.8043 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085089649.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:37 Heat of formation + Delta-G solvation = -74.438785 kcal Electronic energy + Delta-G solvation = -17603.910933 eV Core-core repulsion = 14729.628672 eV Total energy + Delta-G solvation = -2874.282261 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.46376 -38.61701 -36.81101 -35.12483 -33.32135 -32.64130 -29.98949 -28.11330 -26.01751 -24.38254 -23.29916 -21.86778 -20.96464 -18.86140 -17.69536 -16.96808 -16.07299 -15.85683 -15.49762 -15.33388 -14.53806 -14.42439 -14.11381 -13.91204 -13.07203 -12.82816 -12.54196 -12.36726 -12.03168 -11.97019 -11.71863 -11.34196 -11.14139 -10.95384 -10.94333 -10.75050 -10.10360 -10.00597 -9.88899 -9.30856 -8.88844 -8.72667 -8.38706 -6.03721 -4.06952 1.74620 2.74640 3.05797 3.32132 3.37533 3.41629 3.78971 3.80823 4.44476 4.57965 4.77779 4.83319 5.04652 5.26002 5.32935 5.38332 5.41369 5.61446 5.87149 5.92074 5.96637 6.00430 6.19486 6.22788 6.35261 6.71681 6.74025 7.22259 7.57844 7.67575 7.80807 7.91715 8.03137 8.32415 8.97754 9.56773 11.08175 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.036088 B = 0.006007 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.699603 B = 4660.431441 C = 5092.828770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C 0.067 3.933 4 H 0.124 0.876 5 N -0.660 5.660 6 C 0.038 3.962 7 C 0.478 3.522 8 O -0.492 6.492 9 N -0.564 5.564 10 C 0.096 3.904 11 C 0.018 3.982 12 C -0.520 4.520 13 H 0.058 0.942 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.898 3.102 17 H -0.279 1.279 18 H -0.273 1.273 19 H -0.285 1.285 20 C 0.482 3.518 21 O -0.486 6.486 22 H 0.066 0.934 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.351 0.649 28 H 0.119 0.881 29 H 0.124 0.876 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.019 0.981 33 H 0.020 0.980 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.343 -6.040 8.111 18.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C -0.046 4.046 4 H 0.142 0.858 5 N -0.292 5.292 6 C -0.094 4.094 7 C 0.265 3.735 8 O -0.362 6.362 9 N -0.306 5.306 10 C -0.023 4.023 11 C -0.019 4.019 12 C -0.559 4.559 13 H 0.076 0.924 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.197 1.197 19 H -0.211 1.211 20 C 0.269 3.731 21 O -0.356 6.356 22 H 0.085 0.915 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.104 0.896 26 H 0.085 0.915 27 H 0.170 0.830 28 H 0.137 0.863 29 H 0.142 0.858 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.278 -5.765 7.664 18.039 hybrid contribution 2.109 0.031 -0.148 2.115 sum -13.169 -5.734 7.516 16.211 Atomic orbital electron populations 1.21683 0.94178 1.01497 1.02736 1.21442 0.96945 0.92207 1.03837 1.22174 0.88421 0.98955 0.95012 0.85836 1.60914 1.61332 1.02765 1.04205 1.22602 0.87306 0.92492 1.06990 1.22219 0.92699 0.81063 0.77489 1.90749 1.65160 1.35943 1.44381 1.47212 1.11952 1.24418 1.47050 1.22234 0.74444 1.02923 1.02741 1.19307 0.96979 0.94985 0.90657 1.21012 0.91235 1.33832 1.09789 0.92390 1.24998 0.98512 0.95120 0.95624 1.69973 1.35304 1.34429 1.13537 0.86500 0.85192 0.78508 0.77263 1.20542 1.19744 1.21116 1.22124 0.91350 0.81135 0.78515 1.90725 1.73294 1.34893 1.36724 0.91458 0.92642 0.92771 0.89627 0.91496 0.82975 0.86272 0.85848 0.90053 0.90044 0.96221 0.96199 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.80 37.16 0.36 -0.73 16 2 C -0.11 -1.02 5.23 -26.73 -0.14 -1.16 16 3 C 0.07 0.75 2.67 -68.79 -0.18 0.57 16 4 H 0.12 1.29 8.14 -51.93 -0.42 0.87 16 5 N -0.66 -6.02 6.10 -109.01 -0.66 -6.69 16 6 C 0.04 0.40 6.71 -4.91 -0.03 0.36 16 7 C 0.48 7.86 7.60 -11.15 -0.08 7.77 16 8 O -0.49 -9.99 16.55 5.61 0.09 -9.89 16 9 N -0.56 -10.39 2.54 -115.56 -0.29 -10.68 16 10 C 0.10 2.16 4.98 -4.04 -0.02 2.14 16 11 C 0.02 0.51 5.30 -27.88 -0.15 0.36 16 12 C -0.52 -15.33 9.11 -34.44 -0.31 -15.64 16 13 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 15 N -0.89 -27.67 13.29 55.43 0.74 -26.93 16 16 Si 0.90 22.26 29.54 -169.99 -5.02 17.24 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 20 C 0.48 8.00 7.29 -11.15 -0.08 7.92 16 21 O -0.49 -9.77 15.52 5.61 0.09 -9.69 16 22 H 0.07 0.49 7.76 -51.93 -0.40 0.09 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.09 0.94 7.66 -51.93 -0.40 0.54 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.35 2.89 8.78 -39.29 -0.34 2.54 16 28 H 0.12 1.11 8.14 -51.93 -0.42 0.68 16 29 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.08 1.84 7.34 -51.93 -0.38 1.46 16 31 H 0.08 1.85 7.34 -51.93 -0.38 1.46 16 32 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 289.08 15.07 4.36 4.36 Total: -1.00 -34.73 289.08 -6.27 -41.00 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -4.83 Total: -1.97 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: -0.74 Total: 3.25 kcal Atomic # 7 Polarization: -44.08 SS G_CDS: -0.22 Total: -44.30 kcal Atomic # 8 Polarization: -19.76 SS G_CDS: 0.18 Total: -19.58 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -34.73 -6.27 -41.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085089649.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.437 kcal (2) G-P(sol) polarization free energy of solvation -34.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds