Wall clock time and date at job start Mon Mar 30 2020 03:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47428 * 2 1 4 4 H 1.08994 * 109.51112 * 305.09396 * 3 2 1 5 5 N 1.47076 * 109.50519 * 65.22961 * 3 2 1 6 6 C 1.47063 * 110.36107 * 176.88471 * 5 3 2 7 7 C 1.50659 * 109.15141 * 302.85263 * 6 5 3 8 8 O 1.21222 * 119.67707 * 209.04627 * 7 6 5 9 9 N 1.34451 * 120.64849 * 29.29281 * 7 6 5 10 10 C 1.46499 * 119.31626 * 179.27633 * 9 7 6 11 11 C 1.53004 * 109.47270 * 269.73100 * 10 9 7 12 12 C 1.50699 * 109.46843 * 180.02562 * 11 10 9 13 13 H 1.08002 * 120.00516 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99783 * 180.02562 * 12 11 10 15 15 N 1.31514 * 119.99707 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99956 * 180.27458 * 14 12 11 17 17 H 1.48503 * 109.47407 * 269.72718 * 16 14 12 18 18 H 1.48505 * 109.47281 * 29.72474 * 16 14 12 19 19 H 1.48501 * 109.47274 * 149.72572 * 16 14 12 20 20 C 1.34446 * 121.36327 * 359.00728 * 9 7 6 21 21 O 1.21222 * 119.67690 * 180.76634 * 20 9 7 22 22 H 1.09002 * 109.46927 * 299.99718 * 1 2 3 23 23 H 1.09001 * 109.47183 * 59.99655 * 1 2 3 24 24 H 1.08995 * 109.47368 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46927 * 240.00282 * 2 1 3 26 26 H 1.09001 * 109.47154 * 120.00900 * 2 1 3 27 27 H 1.00902 * 110.99929 * 53.38702 * 5 3 2 28 28 H 1.09007 * 109.50943 * 62.97822 * 6 5 3 29 29 H 1.09002 * 109.50965 * 183.11261 * 6 5 3 30 30 H 1.09006 * 109.46638 * 149.73391 * 10 9 7 31 31 H 1.08997 * 109.47029 * 29.73498 * 10 9 7 32 32 H 1.09001 * 109.46361 * 60.00590 * 11 10 9 33 33 H 1.08997 * 109.46991 * 300.00480 * 11 10 9 34 34 H 0.97005 * 119.99656 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6046 1.9826 -0.8406 5 7 1.6562 2.0991 1.2588 6 6 2.2010 3.4641 1.3108 7 6 3.6981 3.4051 1.1534 8 8 4.3896 4.2588 1.6657 9 7 4.2746 2.4175 0.4462 10 6 5.7319 2.3973 0.2985 11 6 6.1284 3.1788 -0.9557 12 6 7.6276 3.1575 -1.1078 13 1 8.2367 2.6388 -0.3823 14 6 8.2216 3.8011 -2.1727 15 7 7.4800 4.4339 -3.0553 16 14 10.0793 3.7681 -2.3656 17 1 10.6711 4.9329 -1.6595 18 1 10.6153 2.5117 -1.7830 19 1 10.4286 3.8337 -3.8074 20 6 3.5416 1.4452 -0.1238 21 8 4.0942 0.5617 -0.7431 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5140 0.8899 27 1 1.9584 1.5586 2.0554 28 1 1.7698 4.0591 0.5056 29 1 1.9555 3.9177 2.2710 30 1 6.0736 1.3662 0.2073 31 1 6.1921 2.8565 1.1734 32 1 5.7868 4.2099 -0.8643 33 1 5.6681 2.7196 -1.8305 34 1 7.8980 4.8870 -3.8043 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085089649.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:37 Heat of formation + Delta-G solvation = -101.012044 kcal Electronic energy + Delta-G solvation = -17605.063236 eV Core-core repulsion = 14729.628672 eV Total energy + Delta-G solvation = -2875.434564 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.79697 -40.02677 -37.89111 -36.74227 -35.25147 -33.74262 -31.95695 -29.03913 -27.68943 -25.82332 -24.58883 -23.46987 -22.22441 -20.12641 -18.94662 -18.86562 -17.82971 -17.22601 -16.61918 -16.46858 -16.37847 -15.79643 -15.47834 -14.99917 -14.91836 -14.43494 -13.84947 -13.73352 -13.39797 -13.04288 -12.93685 -12.77815 -12.70502 -12.51958 -12.11126 -12.10079 -11.92115 -11.72453 -11.50806 -11.26160 -10.68481 -10.65051 -9.84001 -8.32034 -6.45710 0.42295 1.33385 1.37563 1.41818 1.49591 1.75013 2.34230 2.68427 2.88931 3.01608 3.68847 3.73297 3.99201 4.14868 4.22168 4.33061 4.40389 4.53744 4.62978 4.65086 4.68074 4.93831 5.18854 5.23556 5.25731 5.31374 5.38688 5.59321 5.63842 5.94238 5.95940 6.02537 6.46478 6.62525 6.71436 7.24116 8.80922 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.036088 B = 0.006007 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.699603 B = 4660.431441 C = 5092.828770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.103 4.103 3 C 0.081 3.919 4 H 0.140 0.860 5 N -0.634 5.634 6 C 0.055 3.945 7 C 0.474 3.526 8 O -0.537 6.537 9 N -0.575 5.575 10 C 0.111 3.889 11 C 0.033 3.967 12 C -0.550 4.550 13 H 0.064 0.936 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.976 3.024 17 H -0.269 1.269 18 H -0.261 1.261 19 H -0.277 1.277 20 C 0.479 3.521 21 O -0.529 6.529 22 H 0.076 0.924 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.362 0.638 28 H 0.141 0.859 29 H 0.156 0.844 30 H 0.076 0.924 31 H 0.077 0.923 32 H -0.013 1.013 33 H -0.013 1.013 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.574 -6.324 9.010 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.141 4.141 3 C -0.032 4.032 4 H 0.157 0.843 5 N -0.266 5.266 6 C -0.077 4.077 7 C 0.265 3.735 8 O -0.410 6.410 9 N -0.317 5.317 10 C -0.011 4.011 11 C -0.005 4.005 12 C -0.588 4.588 13 H 0.083 0.917 14 C -0.197 4.197 15 N -0.571 5.571 16 Si 0.799 3.201 17 H -0.194 1.194 18 H -0.185 1.185 19 H -0.202 1.202 20 C 0.268 3.732 21 O -0.401 6.401 22 H 0.095 0.905 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.182 0.818 28 H 0.158 0.842 29 H 0.174 0.826 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.006 0.994 33 H 0.005 0.995 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.564 -6.064 8.591 19.620 hybrid contribution 2.451 0.119 -0.433 2.492 sum -14.113 -5.944 8.158 17.352 Atomic orbital electron populations 1.21639 0.91974 1.02373 1.03315 1.21450 0.98575 0.90739 1.03346 1.22312 0.83685 1.00625 0.96546 0.84285 1.60972 1.59614 1.02295 1.03720 1.22817 0.81941 0.93448 1.09510 1.23627 0.95147 0.79242 0.75522 1.90728 1.66723 1.37419 1.46162 1.47418 1.10286 1.25984 1.48029 1.21641 0.78057 1.01430 0.99938 1.19046 0.96366 0.93369 0.91709 1.21463 0.92367 1.34470 1.10513 0.91741 1.26062 1.04456 0.94216 0.94939 1.70106 1.37864 1.34989 1.14139 0.85291 0.77973 0.79181 0.77668 1.19380 1.18540 1.20208 1.23422 0.93472 0.79553 0.76766 1.90701 1.74494 1.36439 1.38501 0.90537 0.92316 0.91850 0.91321 0.91034 0.81811 0.84170 0.82634 0.90567 0.90471 0.99444 0.99480 0.92429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.80 71.98 0.71 -0.92 16 2 C -0.10 -1.78 5.23 30.59 0.16 -1.62 16 3 C 0.08 1.66 2.67 44.12 0.12 1.77 16 4 H 0.14 2.53 8.14 -2.39 -0.02 2.51 16 5 N -0.63 -9.35 6.10 -498.81 -3.04 -12.39 16 6 C 0.05 0.96 6.71 85.51 0.57 1.54 16 7 C 0.47 15.34 7.60 87.70 0.67 16.01 16 8 O -0.54 -22.07 16.55 -2.85 -0.05 -22.12 16 9 N -0.57 -21.58 2.54 -756.71 -1.93 -23.50 16 10 C 0.11 5.23 4.98 86.38 0.43 5.66 16 11 C 0.03 1.91 5.30 29.85 0.16 2.07 16 12 C -0.55 -33.45 9.11 25.60 0.23 -33.22 16 13 H 0.06 3.73 7.74 -2.91 -0.02 3.71 16 14 C 0.00 0.10 5.46 84.66 0.46 0.56 16 15 N -0.93 -59.10 13.29 21.45 0.28 -58.82 16 16 Si 0.98 46.00 29.54 68.60 2.03 48.02 16 17 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 18 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 20 C 0.48 15.92 7.29 87.70 0.64 16.56 16 21 O -0.53 -21.92 15.52 -2.85 -0.04 -21.97 16 22 H 0.08 0.80 7.76 -2.39 -0.02 0.79 16 23 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.07 1.46 7.66 -2.39 -0.02 1.44 16 26 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.36 4.63 8.78 -89.69 -0.79 3.85 16 28 H 0.14 2.06 8.14 -2.38 -0.02 2.04 16 29 H 0.16 1.89 8.14 -2.39 -0.02 1.88 16 30 H 0.08 3.62 7.34 -2.38 -0.02 3.60 16 31 H 0.08 3.66 7.34 -2.39 -0.02 3.64 16 32 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 33 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 34 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -79.26 289.08 1.71 -77.55 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: 0.31 Total: 4.82 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 4.15 Total: 8.41 kcal Atomic # 7 Polarization: -90.03 SS G_CDS: -4.68 Total: -94.71 kcal Atomic # 8 Polarization: -43.99 SS G_CDS: -0.09 Total: -44.08 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.02 kcal Total: -79.26 1.71 -77.55 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085089649.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.466 kcal (2) G-P(sol) polarization free energy of solvation -79.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds