Wall clock time and date at job start Mon Mar 30 2020 04:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.88539 * 2 1 4 4 C 1.54910 * 111.00387 * 123.87817 * 2 1 3 5 5 N 1.47469 * 104.81153 * 155.05206 * 4 2 1 6 6 C 1.34781 * 125.63026 * 155.85946 * 5 4 2 7 7 O 1.21439 * 120.00276 * 180.02562 * 6 5 4 8 8 C 1.48832 * 119.99707 * 0.08002 * 6 5 4 9 9 O 1.21499 * 120.00350 * 0.02562 * 8 6 5 10 10 N 1.34781 * 119.99715 * 179.97438 * 8 6 5 11 11 C 1.36121 * 119.99968 * 179.97438 * 10 8 6 12 12 H 1.08003 * 119.99708 * 0.02562 * 11 10 8 13 13 C 1.39579 * 120.00111 * 179.97438 * 11 10 8 14 14 N 1.31018 * 120.00249 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00055 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47217 * 60.00181 * 15 13 11 17 17 H 1.48507 * 109.47398 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47311 * 300.00393 * 15 13 11 19 19 C 1.47020 * 108.72071 * 335.92901 * 5 4 2 20 20 C 1.54319 * 107.27293 * 1.02627 * 19 5 4 21 21 H 1.09000 * 110.86816 * 263.75827 * 20 19 5 22 22 C 1.53002 * 110.72083 * 140.55448 * 20 19 5 23 23 H 1.09002 * 109.47153 * 180.70235 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.70426 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.70407 * 1 2 3 26 26 H 1.09008 * 110.36740 * 273.92077 * 4 2 1 27 27 H 1.08992 * 110.36862 * 36.24341 * 4 2 1 28 28 H 0.96994 * 120.00062 * 0.02562 * 10 8 6 29 29 H 0.96993 * 120.00382 * 179.97438 * 14 13 11 30 30 H 1.09002 * 109.88045 * 241.60462 * 19 5 4 31 31 H 1.09000 * 110.00990 * 120.51616 * 19 5 4 32 32 H 1.09000 * 109.47196 * 306.48142 * 22 20 19 33 33 H 1.08996 * 109.46840 * 66.47690 * 22 20 19 34 34 H 1.08999 * 109.47179 * 186.47183 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8061 1.2006 5 7 3.4271 -1.2433 0.7730 6 6 4.4481 -1.5608 1.5936 7 8 5.5146 -1.9094 1.1291 8 6 4.2680 -1.4853 3.0690 9 8 3.2005 -1.1379 3.5338 10 7 5.2888 -1.8033 3.8896 11 6 5.1243 -1.7337 5.2391 12 1 4.1756 -1.4241 5.6521 13 6 6.1813 -2.0635 6.0889 14 7 7.3319 -2.4396 5.5879 15 14 5.9553 -1.9688 7.9408 16 1 4.8631 -2.8864 8.3538 17 1 7.2176 -2.3661 8.6145 18 1 5.6055 -0.5780 8.3263 19 6 3.4674 -1.2739 -0.6964 20 6 2.0862 -0.8075 -1.2024 21 1 1.4452 -1.6610 -1.4234 22 6 2.2350 0.0885 -2.4337 23 1 -0.3633 -1.0276 0.0126 24 1 -0.3633 0.5029 -0.8963 25 1 -0.3634 0.5247 0.8836 26 1 2.1560 -0.1711 2.0838 27 1 1.4519 -1.6697 1.4032 28 1 6.1409 -2.0809 3.5186 29 1 8.0666 -2.6684 6.1784 30 1 3.6651 -2.2890 -1.0407 31 1 4.2429 -0.6009 -1.0623 32 1 2.9227 0.9037 -2.2089 33 1 2.6264 -0.4983 -3.2648 34 1 1.2620 0.4981 -2.7047 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092090670.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:18 Heat of formation + Delta-G solvation = -79.247524 kcal Electronic energy + Delta-G solvation = -17351.089037 eV Core-core repulsion = 14476.598254 eV Total energy + Delta-G solvation = -2874.490783 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.92408 -38.13790 -36.83695 -34.34194 -32.89496 -31.37869 -31.23633 -27.03117 -26.13116 -25.47314 -22.81914 -21.19354 -19.97491 -18.92397 -18.10894 -16.61806 -16.09313 -15.60335 -14.89061 -14.53252 -14.20332 -13.92541 -13.75663 -13.29053 -13.06890 -12.67486 -12.55398 -12.24220 -12.11675 -11.81809 -11.76235 -11.52521 -11.16911 -10.78247 -10.67955 -10.56260 -10.44978 -10.38185 -10.08162 -9.69041 -8.30385 -8.20335 -8.08957 -6.65419 -3.98013 2.47613 3.15000 3.18092 3.18186 3.32033 4.05629 4.28241 4.45521 4.61958 4.76707 4.98007 5.19886 5.27852 5.34377 5.40779 5.45708 5.64081 5.68128 5.77988 5.90140 5.92709 5.96298 6.06063 6.12459 6.21034 6.38392 6.44015 6.72473 7.32160 7.74961 7.87465 8.32017 8.61534 8.97362 9.33582 9.86675 10.49526 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.046634 B = 0.005418 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.279321 B = 5166.545274 C = 5684.650710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.083 0.917 4 C 0.110 3.890 5 N -0.603 5.603 6 C 0.526 3.474 7 O -0.548 6.548 8 C 0.398 3.602 9 O -0.591 6.591 10 N -0.500 5.500 11 C -0.306 4.306 12 H 0.112 0.888 13 C 0.031 3.969 14 N -0.870 5.870 15 Si 0.940 3.060 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.269 1.269 19 C 0.111 3.889 20 C -0.102 4.102 21 H 0.083 0.917 22 C -0.140 4.140 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.065 0.935 28 H 0.404 0.596 29 H 0.281 0.719 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.524 3.678 -10.853 14.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 H 0.101 0.899 4 C -0.012 4.012 5 N -0.338 5.338 6 C 0.313 3.687 7 O -0.425 6.425 8 C 0.183 3.817 9 O -0.480 6.480 10 N -0.134 5.134 11 C -0.437 4.437 12 H 0.130 0.870 13 C -0.176 4.176 14 N -0.508 5.508 15 Si 0.765 3.235 16 H -0.194 1.194 17 H -0.206 1.206 18 H -0.194 1.194 19 C -0.012 4.012 20 C -0.121 4.121 21 H 0.102 0.898 22 C -0.197 4.197 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.124 0.876 27 H 0.083 0.917 28 H 0.240 0.760 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.353 3.617 -10.659 14.635 hybrid contribution 0.521 -0.225 0.571 0.805 sum -8.832 3.392 -10.089 13.831 Atomic orbital electron populations 1.21661 0.93951 1.02076 1.01819 1.22545 0.96086 0.99518 0.94578 0.89906 1.22620 0.82064 0.98820 0.97731 1.48141 1.13040 1.66844 1.05740 1.20480 0.82426 0.77151 0.88675 1.90687 1.26022 1.47657 1.78181 1.18851 0.86620 0.90589 0.85676 1.90517 1.26417 1.54911 1.76153 1.41544 1.12812 1.52650 1.06367 1.19822 1.00346 1.43140 0.80353 0.87020 1.25580 0.94475 0.95774 1.01738 1.69478 1.02745 1.40962 1.37595 0.85779 0.77865 0.79321 0.80506 1.19392 1.20604 1.19396 1.21987 0.97182 1.01281 0.80757 1.22297 0.95834 0.98744 0.95206 0.89816 1.21742 1.01880 0.99346 0.96744 0.92435 0.92540 0.92114 0.87610 0.91690 0.76022 0.90879 0.91819 0.91559 0.92370 0.92491 0.92240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 9.29 37.16 0.35 -0.97 16 2 C -0.11 -1.29 3.08 -88.47 -0.27 -1.57 16 3 H 0.08 0.99 8.05 -51.93 -0.42 0.58 16 4 C 0.11 1.81 5.52 -2.50 -0.01 1.79 16 5 N -0.60 -11.35 3.33 -171.23 -0.57 -11.92 16 6 C 0.53 12.18 7.89 -11.87 -0.09 12.09 16 7 O -0.55 -13.64 16.80 5.42 0.09 -13.55 16 8 C 0.40 10.27 7.78 -11.87 -0.09 10.17 16 9 O -0.59 -15.69 13.33 5.37 0.07 -15.61 16 10 N -0.50 -13.61 5.25 -11.59 -0.06 -13.67 16 11 C -0.31 -8.49 9.67 -15.15 -0.15 -8.63 16 12 H 0.11 3.13 7.15 -52.48 -0.38 2.76 16 13 C 0.03 0.82 5.51 -17.40 -0.10 0.72 16 14 N -0.87 -23.54 13.03 55.53 0.72 -22.81 16 15 Si 0.94 20.17 29.56 -169.99 -5.02 15.14 16 16 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 17 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.27 -5.70 7.11 56.52 0.40 -5.29 16 19 C 0.11 1.65 6.47 -3.07 -0.02 1.63 16 20 C -0.10 -1.13 3.02 -88.79 -0.27 -1.40 16 21 H 0.08 0.86 8.04 -51.93 -0.42 0.44 16 22 C -0.14 -1.24 9.16 37.16 0.34 -0.90 16 23 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.11 1.99 6.15 -51.92 -0.32 1.67 16 27 H 0.06 1.06 8.03 -51.93 -0.42 0.64 16 28 H 0.40 11.15 7.35 -40.82 -0.30 10.85 16 29 H 0.28 7.05 8.30 -40.82 -0.34 6.71 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.99 7.76 -51.93 -0.40 0.58 16 32 H 0.06 0.54 8.06 -51.93 -0.42 0.12 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 287.73 15.07 4.34 4.34 Total: -1.00 -30.48 287.73 -5.49 -35.97 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -4.74 Total: 9.20 kcal Atomic # 6 Polarization: 13.24 SS G_CDS: -0.32 Total: 12.93 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.09 Total: -48.40 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: 0.16 Total: -29.17 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.48 -5.49 -35.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092090670.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.282 kcal (2) G-P(sol) polarization free energy of solvation -30.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds