Wall clock time and date at job start Mon Mar 30 2020 04:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 110.88539 * 2 1 4 4 C 1.54910 * 111.00387 * 123.87817 * 2 1 3 5 5 N 1.47469 * 104.81153 * 155.05206 * 4 2 1 6 6 C 1.34781 * 125.63026 * 155.85946 * 5 4 2 7 7 O 1.21439 * 120.00276 * 180.02562 * 6 5 4 8 8 C 1.48832 * 119.99707 * 0.08002 * 6 5 4 9 9 O 1.21499 * 120.00350 * 0.02562 * 8 6 5 10 10 N 1.34781 * 119.99715 * 179.97438 * 8 6 5 11 11 C 1.36121 * 119.99968 * 179.97438 * 10 8 6 12 12 H 1.08003 * 119.99708 * 0.02562 * 11 10 8 13 13 C 1.39579 * 120.00111 * 179.97438 * 11 10 8 14 14 N 1.31018 * 120.00249 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00055 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.47217 * 60.00181 * 15 13 11 17 17 H 1.48507 * 109.47398 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.47311 * 300.00393 * 15 13 11 19 19 C 1.47020 * 108.72071 * 335.92901 * 5 4 2 20 20 C 1.54319 * 107.27293 * 1.02627 * 19 5 4 21 21 H 1.09000 * 110.86816 * 263.75827 * 20 19 5 22 22 C 1.53002 * 110.72083 * 140.55448 * 20 19 5 23 23 H 1.09002 * 109.47153 * 180.70235 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.70426 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.70407 * 1 2 3 26 26 H 1.09008 * 110.36740 * 273.92077 * 4 2 1 27 27 H 1.08992 * 110.36862 * 36.24341 * 4 2 1 28 28 H 0.96994 * 120.00062 * 0.02562 * 10 8 6 29 29 H 0.96993 * 120.00382 * 179.97438 * 14 13 11 30 30 H 1.09002 * 109.88045 * 241.60462 * 19 5 4 31 31 H 1.09000 * 110.00990 * 120.51616 * 19 5 4 32 32 H 1.09000 * 109.47196 * 306.48142 * 22 20 19 33 33 H 1.08996 * 109.46840 * 66.47690 * 22 20 19 34 34 H 1.08999 * 109.47179 * 186.47183 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8061 1.2006 5 7 3.4271 -1.2433 0.7730 6 6 4.4481 -1.5608 1.5936 7 8 5.5146 -1.9094 1.1291 8 6 4.2680 -1.4853 3.0690 9 8 3.2005 -1.1379 3.5338 10 7 5.2888 -1.8033 3.8896 11 6 5.1243 -1.7337 5.2391 12 1 4.1756 -1.4241 5.6521 13 6 6.1813 -2.0635 6.0889 14 7 7.3319 -2.4396 5.5879 15 14 5.9553 -1.9688 7.9408 16 1 4.8631 -2.8864 8.3538 17 1 7.2176 -2.3661 8.6145 18 1 5.6055 -0.5780 8.3263 19 6 3.4674 -1.2739 -0.6964 20 6 2.0862 -0.8075 -1.2024 21 1 1.4452 -1.6610 -1.4234 22 6 2.2350 0.0885 -2.4337 23 1 -0.3633 -1.0276 0.0126 24 1 -0.3633 0.5029 -0.8963 25 1 -0.3634 0.5247 0.8836 26 1 2.1560 -0.1711 2.0838 27 1 1.4519 -1.6697 1.4032 28 1 6.1409 -2.0809 3.5186 29 1 8.0666 -2.6684 6.1784 30 1 3.6651 -2.2890 -1.0407 31 1 4.2429 -0.6009 -1.0623 32 1 2.9227 0.9037 -2.2089 33 1 2.6264 -0.4983 -3.2648 34 1 1.2620 0.4981 -2.7047 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092090670.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:02:17 Heat of formation + Delta-G solvation = -100.432463 kcal Electronic energy + Delta-G solvation = -17352.007685 eV Core-core repulsion = 14476.598254 eV Total energy + Delta-G solvation = -2875.409431 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.57613 -39.75510 -38.66653 -36.34570 -34.31005 -33.41332 -32.20448 -28.55412 -27.26449 -27.24009 -24.39415 -22.51892 -21.03555 -20.77844 -20.06575 -18.36815 -17.79755 -17.22810 -16.77635 -16.15291 -15.80015 -15.31268 -14.94794 -14.77835 -14.63241 -14.13568 -13.72520 -13.67226 -13.55725 -13.05833 -12.97039 -12.77216 -12.58808 -12.44748 -12.19539 -12.12126 -11.72306 -11.66587 -11.62611 -11.23742 -10.29279 -10.11494 -9.78447 -8.66538 -6.11716 0.56181 1.39592 1.48391 1.52445 1.68782 2.26872 2.33225 3.05202 3.13607 3.52104 3.59743 3.82743 3.97493 4.23786 4.35733 4.53266 4.59414 4.64657 4.78592 4.81322 4.91191 5.02003 5.14024 5.20124 5.23425 5.25789 5.28263 5.45623 5.52057 5.67223 6.17433 6.30842 6.72479 6.94209 7.26016 7.78168 8.49363 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.046634 B = 0.005418 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.279321 B = 5166.545274 C = 5684.650710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.096 4.096 3 H 0.084 0.916 4 C 0.102 3.898 5 N -0.596 5.596 6 C 0.523 3.477 7 O -0.573 6.573 8 C 0.392 3.608 9 O -0.604 6.604 10 N -0.512 5.512 11 C -0.345 4.345 12 H 0.100 0.900 13 C -0.005 4.005 14 N -0.898 5.898 15 Si 1.012 2.988 16 H -0.263 1.263 17 H -0.267 1.267 18 H -0.263 1.263 19 C 0.100 3.900 20 C -0.088 4.088 21 H 0.101 0.899 22 C -0.135 4.135 23 H 0.061 0.939 24 H 0.082 0.918 25 H 0.058 0.942 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.399 0.601 29 H 0.289 0.711 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.961 4.140 -11.758 16.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.115 4.115 3 H 0.102 0.898 4 C -0.020 4.020 5 N -0.328 5.328 6 C 0.308 3.692 7 O -0.454 6.454 8 C 0.177 3.823 9 O -0.493 6.493 10 N -0.146 5.146 11 C -0.475 4.475 12 H 0.118 0.882 13 C -0.209 4.209 14 N -0.535 5.535 15 Si 0.833 3.167 16 H -0.188 1.188 17 H -0.191 1.191 18 H -0.188 1.188 19 C -0.021 4.021 20 C -0.107 4.107 21 H 0.119 0.881 22 C -0.193 4.193 23 H 0.080 0.920 24 H 0.101 0.899 25 H 0.077 0.923 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.233 0.767 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.828 4.092 -11.603 16.390 hybrid contribution 0.917 -0.356 0.763 1.244 sum -9.912 3.736 -10.841 15.157 Atomic orbital electron populations 1.21656 0.91546 1.02782 1.03045 1.22515 0.97845 0.98754 0.92428 0.89769 1.22777 0.81041 0.99079 0.99085 1.48273 1.12729 1.64362 1.07453 1.19970 0.83277 0.78011 0.87915 1.90662 1.27131 1.49378 1.78203 1.19439 0.86147 0.89591 0.87104 1.90496 1.26710 1.55065 1.77044 1.41651 1.12896 1.53377 1.06664 1.19958 1.00815 1.45676 0.81003 0.88173 1.26572 0.93591 0.94256 1.06506 1.69553 1.03489 1.40885 1.39614 0.84728 0.78397 0.79546 0.74076 1.18788 1.19104 1.18779 1.22379 1.00027 1.01807 0.77922 1.22321 0.93210 0.99584 0.95573 0.88109 1.21735 1.03119 0.98788 0.95625 0.91978 0.89944 0.92337 0.90506 0.91509 0.76656 0.90084 0.91555 0.91486 0.92909 0.91383 0.90079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.12 9.29 71.98 0.67 -1.45 16 2 C -0.10 -2.09 3.08 -9.40 -0.03 -2.12 16 3 H 0.08 1.84 8.05 -2.38 -0.02 1.82 16 4 C 0.10 3.32 5.52 86.85 0.48 3.80 16 5 N -0.60 -22.49 3.33 -813.96 -2.71 -25.20 16 6 C 0.52 24.92 7.89 87.08 0.69 25.60 16 7 O -0.57 -29.37 16.80 -3.52 -0.06 -29.43 16 8 C 0.39 21.02 7.78 87.08 0.68 21.70 16 9 O -0.60 -33.19 13.33 -3.71 -0.05 -33.24 16 10 N -0.51 -29.08 5.25 -308.87 -1.62 -30.70 16 11 C -0.34 -19.73 9.67 84.35 0.82 -18.92 16 12 H 0.10 5.83 7.15 -2.91 -0.02 5.81 16 13 C -0.01 -0.27 5.51 85.14 0.47 0.20 16 14 N -0.90 -49.16 13.03 21.76 0.28 -48.88 16 15 Si 1.01 41.15 29.56 68.60 2.03 43.18 16 16 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 17 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 18 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 19 C 0.10 2.85 6.47 86.73 0.56 3.41 16 20 C -0.09 -1.70 3.02 -9.61 -0.03 -1.73 16 21 H 0.10 1.67 8.04 -2.39 -0.02 1.65 16 22 C -0.14 -1.90 9.16 71.98 0.66 -1.24 16 23 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 24 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 25 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 26 H 0.08 2.97 6.15 -2.38 -0.01 2.95 16 27 H 0.07 2.15 8.03 -2.39 -0.02 2.13 16 28 H 0.40 23.05 7.35 -92.71 -0.68 22.37 16 29 H 0.29 14.49 8.30 -92.71 -0.77 13.72 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.07 1.92 7.76 -2.39 -0.02 1.90 16 32 H 0.05 0.82 8.06 -2.39 -0.02 0.80 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -67.67 287.73 3.26 -64.41 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.42 Total: 30.60 kcal Atomic # 6 Polarization: 24.30 SS G_CDS: 4.96 Total: 29.26 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -4.04 Total: -104.78 kcal Atomic # 8 Polarization: -62.56 SS G_CDS: -0.11 Total: -62.67 kcal Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal Total: -67.67 3.26 -64.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092090670.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.020 kcal (2) G-P(sol) polarization free energy of solvation -67.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds