Wall clock time and date at job start Mon Mar 30 2020 04:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47289 * 2 1 4 4 C 1.45660 * 118.57601 * 89.99836 * 3 2 1 5 5 C 1.49904 * 111.30014 * 160.51552 * 4 3 2 6 6 O 1.21275 * 118.64599 * 199.71584 * 5 4 3 7 7 N 1.33662 * 122.70837 * 19.68743 * 5 4 3 8 8 C 1.46500 * 118.57588 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.46966 * 90.00073 * 8 7 5 10 10 C 1.50707 * 109.47008 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99696 * 0.02562 * 10 9 8 12 12 C 1.37869 * 120.00002 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99997 * 180.02562 * 12 10 9 14 14 Si 1.86806 * 120.00189 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.46950 * 89.99996 * 14 12 10 16 16 H 1.48505 * 109.46922 * 210.00126 * 14 12 10 17 17 H 1.48502 * 109.46890 * 329.99661 * 14 12 10 18 18 C 1.45658 * 122.84894 * 0.08478 * 7 5 4 19 19 C 1.33660 * 118.57666 * 269.73223 * 3 2 1 20 20 O 1.21286 * 118.63995 * 0.07656 * 19 3 2 21 21 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00146 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00128 * 1 2 3 24 24 H 1.08998 * 109.47533 * 119.99674 * 2 1 3 25 25 H 1.08996 * 109.47853 * 240.00016 * 2 1 3 26 26 H 1.09007 * 109.11364 * 280.98413 * 4 3 2 27 27 H 1.08998 * 109.11627 * 40.10277 * 4 3 2 28 28 H 1.09002 * 109.47140 * 210.00335 * 8 7 5 29 29 H 1.08995 * 109.46836 * 330.00027 * 8 7 5 30 30 H 1.08988 * 109.47476 * 299.99911 * 9 8 7 31 31 H 1.09002 * 109.47072 * 60.00532 * 9 8 7 32 32 H 0.97004 * 120.00074 * 179.97438 * 13 12 10 33 33 H 1.09001 * 109.11612 * 100.99979 * 18 7 5 34 34 H 1.09007 * 109.11428 * 220.12500 * 18 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2506 2.0381 1.2792 5 6 3.1621 3.2185 1.1276 6 8 3.7336 3.6417 2.1100 7 7 3.3713 3.8235 -0.0458 8 6 4.2818 4.9703 -0.0903 9 6 5.7049 4.4812 -0.3666 10 6 6.6415 5.6610 -0.4131 11 1 6.2598 6.6598 -0.2604 12 6 7.9854 5.4654 -0.6506 13 7 8.8028 6.4949 -0.6906 14 14 8.6454 3.7380 -0.9154 15 1 8.5953 3.4054 -2.3618 16 1 10.0503 3.6665 -0.4394 17 1 7.8153 2.7691 -0.1555 18 6 2.7324 3.3928 -1.2818 19 6 2.2367 1.9822 -1.1738 20 8 2.0209 1.3619 -2.1934 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5138 0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 1.2968 2.3737 1.6865 27 1 2.7023 1.3258 1.9694 28 1 3.9710 5.6505 -0.8834 29 1 4.2562 5.4919 0.8664 30 1 6.0158 3.8012 0.4263 31 1 5.7305 3.9596 -1.3234 32 1 9.7484 6.3573 -0.8573 33 1 1.8935 4.0539 -1.4992 34 1 3.4542 3.4527 -2.0965 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094469754.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:28:05 Heat of formation + Delta-G solvation = -87.788510 kcal Electronic energy + Delta-G solvation = -17539.702718 eV Core-core repulsion = 14664.841570 eV Total energy + Delta-G solvation = -2874.861148 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.19848 -40.29670 -37.32800 -36.99437 -35.21348 -33.16925 -31.67613 -29.69466 -28.47313 -26.43682 -24.58392 -23.08071 -21.78207 -19.59860 -19.22933 -18.60380 -17.94623 -17.77104 -16.45980 -16.30277 -15.83908 -15.70925 -15.27081 -14.99496 -14.83243 -14.70471 -14.51218 -14.23846 -13.66106 -13.32127 -13.13842 -12.92885 -12.88889 -12.44203 -12.00502 -11.93038 -11.80603 -11.57148 -11.37515 -10.90266 -10.80994 -9.99085 -9.80908 -8.33806 -6.37844 1.21132 1.29532 1.32338 1.36770 1.43305 1.75611 1.93101 2.30825 2.95358 3.01531 3.43564 3.99704 4.13172 4.21675 4.23358 4.35072 4.40341 4.43091 4.54570 4.55675 4.76519 4.80222 4.90272 5.02607 5.27294 5.29822 5.35440 5.39604 5.60328 5.99271 6.20373 6.32230 6.68413 6.75521 6.99956 7.26954 8.82512 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.033588 B = 0.006262 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.427185 B = 4470.271198 C = 4682.785963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.602 5.602 4 C 0.113 3.887 5 C 0.495 3.505 6 O -0.574 6.574 7 N -0.603 5.603 8 C 0.132 3.868 9 C -0.015 4.015 10 C -0.529 4.529 11 H 0.044 0.956 12 C 0.013 3.987 13 N -0.944 5.944 14 Si 0.944 3.056 15 H -0.261 1.261 16 H -0.281 1.281 17 H -0.263 1.263 18 C 0.098 3.902 19 C 0.513 3.487 20 O -0.566 6.566 21 H 0.084 0.916 22 H 0.040 0.960 23 H 0.070 0.930 24 H 0.108 0.892 25 H 0.072 0.928 26 H 0.135 0.865 27 H 0.135 0.865 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.003 0.997 31 H 0.021 0.979 32 H 0.268 0.732 33 H 0.133 0.867 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.503 -13.822 1.782 23.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.021 4.021 3 N -0.336 5.336 4 C -0.012 4.012 5 C 0.284 3.716 6 O -0.453 6.453 7 N -0.336 5.336 8 C 0.010 3.990 9 C -0.054 4.054 10 C -0.567 4.567 11 H 0.062 0.938 12 C -0.185 4.185 13 N -0.585 5.585 14 Si 0.768 3.232 15 H -0.186 1.186 16 H -0.206 1.206 17 H -0.187 1.187 18 C -0.027 4.027 19 C 0.300 3.700 20 O -0.445 6.445 21 H 0.103 0.897 22 H 0.059 0.941 23 H 0.089 0.911 24 H 0.127 0.873 25 H 0.090 0.910 26 H 0.153 0.847 27 H 0.153 0.847 28 H 0.113 0.887 29 H 0.086 0.914 30 H 0.021 0.979 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.151 0.849 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -18.162 -13.880 1.739 22.925 hybrid contribution 0.925 -0.095 -0.179 0.947 sum -17.237 -13.975 1.560 22.245 Atomic orbital electron populations 1.22049 0.94150 1.03460 1.02063 1.21774 0.95782 0.80214 1.04358 1.47537 1.64860 1.15981 1.05197 1.21587 1.00780 0.92465 0.86350 1.20787 0.82731 0.85451 0.82661 1.90794 1.50372 1.66122 1.38040 1.47634 1.45298 1.32667 1.07972 1.21400 0.88120 0.86701 1.02759 1.19720 0.93774 0.95915 0.95963 1.21268 0.93003 0.93840 1.48634 0.93788 1.25853 0.97317 1.00910 0.94406 1.70034 1.04732 1.32454 1.51251 0.85758 0.77661 0.80356 0.79443 1.18595 1.20643 1.18691 1.21614 1.00815 0.92357 0.87896 1.20189 0.77329 0.88913 0.83520 1.90744 1.53890 1.64740 1.35134 0.89716 0.94112 0.91071 0.87337 0.90972 0.84748 0.84736 0.88710 0.91437 0.97905 0.96042 0.92325 0.84926 0.86697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 10.23 71.98 0.74 -1.18 16 2 C 0.10 1.50 6.01 86.38 0.52 2.02 16 3 N -0.60 -11.92 2.82 -832.45 -2.34 -14.26 16 4 C 0.11 2.05 6.52 85.54 0.56 2.61 16 5 C 0.50 14.86 7.58 87.58 0.66 15.52 16 6 O -0.57 -22.59 16.32 -3.01 -0.05 -22.64 16 7 N -0.60 -18.44 2.81 -832.48 -2.34 -20.78 16 8 C 0.13 5.06 5.20 86.38 0.45 5.51 16 9 C -0.02 -0.73 4.36 29.85 0.13 -0.60 16 10 C -0.53 -30.55 9.66 25.60 0.25 -30.30 16 11 H 0.04 2.73 7.99 -2.91 -0.02 2.71 16 12 C 0.01 0.76 5.47 84.65 0.46 1.22 16 13 N -0.94 -59.35 13.96 21.44 0.30 -59.05 16 14 Si 0.94 45.61 27.47 68.60 1.88 47.50 16 15 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 16 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 17 H -0.26 -12.39 6.54 99.48 0.65 -11.74 16 18 C 0.10 2.38 6.46 85.54 0.55 2.93 16 19 C 0.51 12.89 7.58 87.58 0.66 13.56 16 20 O -0.57 -17.43 16.32 -3.05 -0.05 -17.48 16 21 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 22 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 24 H 0.11 1.04 7.89 -2.39 -0.02 1.02 16 25 H 0.07 1.38 7.23 -2.39 -0.02 1.36 16 26 H 0.14 1.62 8.14 -2.38 -0.02 1.60 16 27 H 0.13 1.97 7.94 -2.39 -0.02 1.95 16 28 H 0.09 3.23 8.03 -2.39 -0.02 3.22 16 29 H 0.07 2.86 7.24 -2.39 -0.02 2.84 16 30 H 0.00 0.13 7.20 -2.39 -0.02 0.12 16 31 H 0.02 0.97 7.57 -2.39 -0.02 0.96 16 32 H 0.27 15.69 8.31 -92.71 -0.77 14.91 16 33 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.12 2.93 8.11 -2.38 -0.02 2.91 16 Total: -1.00 -76.34 287.73 3.41 -72.93 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: 1.03 Total: 2.49 kcal Atomic # 6 Polarization: 6.31 SS G_CDS: 4.98 Total: 11.29 kcal Atomic # 7 Polarization: -89.70 SS G_CDS: -4.39 Total: -94.09 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -0.10 Total: -40.12 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.88 Total: 47.50 kcal Total: -76.34 3.41 -72.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094469754.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.854 kcal (2) G-P(sol) polarization free energy of solvation -76.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds