Wall clock time and date at job start Mon Mar 30 2020 03:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47127 * 2 1 4 4 N 1.46501 * 109.47472 * 180.02562 * 3 2 1 5 5 C 1.45659 * 118.57671 * 89.99743 * 4 3 2 6 6 C 1.49903 * 111.24694 * 160.48527 * 5 4 3 7 7 O 1.21281 * 118.64347 * 199.74612 * 6 5 4 8 8 N 1.33661 * 122.71603 * 19.72410 * 6 5 4 9 9 C 1.46499 * 118.57824 * 180.02562 * 8 6 5 10 10 C 1.50704 * 109.46705 * 90.00387 * 9 8 6 11 11 H 1.07996 * 120.00133 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99609 * 180.02562 * 10 9 8 13 13 N 1.31506 * 120.00279 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 119.99796 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47034 * 89.99928 * 14 12 10 16 16 H 1.48501 * 109.46958 * 209.99865 * 14 12 10 17 17 H 1.48500 * 109.46719 * 329.99962 * 14 12 10 18 18 C 1.45660 * 122.84374 * 0.07991 * 8 6 5 19 19 C 1.33592 * 118.51774 * 270.04497 * 4 3 2 20 20 O 1.21281 * 118.66464 * 0.08885 * 19 4 3 21 21 H 1.09000 * 109.47141 * 299.99666 * 1 2 3 22 22 H 1.09007 * 109.47128 * 59.99837 * 1 2 3 23 23 H 1.09001 * 109.47388 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47141 * 240.00333 * 2 1 3 25 25 H 1.08997 * 109.47038 * 120.00038 * 2 1 3 26 26 H 1.09008 * 109.47124 * 60.00280 * 3 2 1 27 27 H 1.08995 * 109.47666 * 300.00157 * 3 2 1 28 28 H 1.09002 * 109.11343 * 40.04746 * 5 4 3 29 29 H 1.09004 * 109.11465 * 280.92080 * 5 4 3 30 30 H 1.09003 * 109.46958 * 210.00173 * 9 8 6 31 31 H 1.09001 * 109.47305 * 330.00414 * 9 8 6 32 32 H 0.97007 * 120.00299 * 180.02562 * 13 12 10 33 33 H 1.09003 * 109.11687 * 100.99862 * 18 8 6 34 34 H 1.08998 * 109.11335 * 220.12465 * 18 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2012 1.4427 -1.2801 6 6 5.6175 1.9095 -1.1277 7 8 6.2070 2.3083 -2.1098 8 7 6.2575 1.9047 0.0457 9 6 7.6418 2.3819 0.0909 10 6 7.6536 3.8639 0.3642 11 1 6.7231 4.3970 0.4911 12 6 8.8525 4.5392 0.4512 13 7 9.9857 3.8901 0.2961 14 14 8.8672 6.3764 0.7892 15 1 8.9141 6.6096 2.2551 16 1 10.0615 6.9873 0.1524 17 1 7.6377 6.9925 0.2290 18 6 5.6384 1.4446 1.2813 19 6 4.1433 1.4415 1.1729 20 8 3.4864 1.4388 2.1925 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6766 1.9563 0.8901 27 1 1.6767 1.9563 -0.8899 28 1 3.6792 2.1054 -1.9703 29 1 4.2004 0.4315 -1.6870 30 1 8.1797 1.8619 0.8836 31 1 8.1254 2.1850 -0.8660 32 1 10.8292 4.3652 0.3577 33 1 5.9826 0.4334 1.4980 34 1 5.9348 2.1048 2.0964 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094469774.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:33 Heat of formation + Delta-G solvation = -68.121327 kcal Electronic energy + Delta-G solvation = -17535.136197 eV Core-core repulsion = 14661.127882 eV Total energy + Delta-G solvation = -2874.008315 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.71592 -38.62487 -36.14462 -35.12424 -33.51696 -32.51358 -28.92022 -28.31161 -26.54007 -25.35790 -23.12429 -21.93260 -20.54209 -18.06143 -17.20834 -16.92591 -16.60699 -16.01683 -15.07816 -15.01061 -14.30520 -14.20070 -13.99674 -13.74623 -13.56938 -13.09647 -12.73180 -12.21706 -12.12830 -11.97412 -11.74899 -11.46600 -11.32554 -10.99409 -10.81038 -10.68388 -10.26413 -9.92617 -9.67076 -9.25547 -8.73878 -8.48606 -7.91546 -6.10477 -4.15463 2.58169 2.79630 3.23304 3.28927 3.35310 3.40176 3.67386 4.35984 4.41604 4.77620 4.84367 4.88025 5.10385 5.23667 5.26224 5.30920 5.40673 5.54487 5.60407 5.68773 5.77483 5.84992 5.99143 6.06440 6.34675 6.80962 7.25907 7.26923 7.37747 7.84530 8.04888 8.13354 8.20136 8.71517 8.89488 9.49809 10.97986 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.037775 B = 0.005965 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.058998 B = 4693.289560 C = 4880.421421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.139 4.139 3 C 0.108 3.892 4 N -0.605 5.605 5 C 0.101 3.899 6 C 0.498 3.502 7 O -0.532 6.532 8 N -0.589 5.589 9 C 0.240 3.760 10 C -0.530 4.530 11 H 0.057 0.943 12 C 0.064 3.936 13 N -0.893 5.893 14 Si 0.899 3.101 15 H -0.279 1.279 16 H -0.284 1.284 17 H -0.274 1.274 18 C 0.104 3.896 19 C 0.516 3.484 20 O -0.543 6.543 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.037 0.963 31 H 0.052 0.948 32 H 0.264 0.736 33 H 0.094 0.906 34 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.625 -7.773 -0.750 16.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C -0.014 4.014 4 N -0.339 5.339 5 C -0.025 4.025 6 C 0.283 3.717 7 O -0.408 6.408 8 N -0.323 5.323 9 C 0.121 3.879 10 C -0.569 4.569 11 H 0.076 0.924 12 C -0.139 4.139 13 N -0.532 5.532 14 Si 0.727 3.273 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.023 4.023 19 C 0.304 3.696 20 O -0.420 6.420 21 H 0.076 0.924 22 H 0.074 0.926 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.096 0.904 28 H 0.126 0.874 29 H 0.111 0.889 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.416 -7.531 -0.730 16.281 hybrid contribution 0.109 0.976 0.159 0.995 sum -14.307 -6.555 -0.571 15.748 Atomic orbital electron populations 1.21681 0.95106 1.01842 1.01960 1.21858 0.96186 0.97091 1.02590 1.21627 0.78816 0.97335 1.03620 1.47406 1.07332 1.73302 1.05909 1.21569 0.91241 1.03595 0.86103 1.19699 0.87811 0.80007 0.84142 1.90765 1.66482 1.46856 1.36741 1.47716 1.17101 1.61879 1.05565 1.19455 0.74464 0.94672 0.99273 1.21361 0.92777 0.93223 1.49531 0.92436 1.24911 0.95280 0.98720 0.94970 1.69921 0.97471 1.36309 1.49464 0.86474 0.77698 0.84836 0.78306 1.20523 1.21012 1.19895 1.21325 0.87666 1.02706 0.90584 1.20341 0.90870 0.75401 0.83007 1.90711 1.66874 1.50242 1.34160 0.92441 0.92633 0.92544 0.91861 0.91415 0.89369 0.90377 0.87442 0.88875 0.94511 0.92992 0.92590 0.88847 0.86301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.14 -1.34 6.25 -26.74 -0.17 -1.51 16 3 C 0.11 1.22 5.28 -4.04 -0.02 1.20 16 4 N -0.61 -8.46 2.81 -176.88 -0.50 -8.96 16 5 C 0.10 1.39 6.52 -6.03 -0.04 1.35 16 6 C 0.50 9.83 7.58 -11.87 -0.09 9.74 16 7 O -0.53 -12.76 16.32 5.56 0.09 -12.67 16 8 N -0.59 -12.12 2.80 -178.23 -0.50 -12.62 16 9 C 0.24 6.05 5.02 -5.19 -0.03 6.03 16 10 C -0.53 -14.77 9.38 -34.44 -0.32 -15.10 16 11 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 12 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 13 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 14 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 18 C 0.10 1.76 6.46 -6.03 -0.04 1.72 16 19 C 0.52 8.45 7.58 -11.90 -0.09 8.36 16 20 O -0.54 -9.96 16.32 5.56 0.09 -9.87 16 21 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.09 1.11 7.24 -51.92 -0.38 0.73 16 27 H 0.08 0.71 7.88 -51.93 -0.41 0.30 16 28 H 0.11 1.31 7.94 -51.93 -0.41 0.90 16 29 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.04 0.93 8.03 -51.93 -0.42 0.51 16 31 H 0.05 1.47 7.24 -51.93 -0.38 1.09 16 32 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 33 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.12 2.11 8.11 -51.93 -0.42 1.69 16 LS Contribution 291.38 15.07 4.39 4.39 Total: -1.00 -32.88 291.38 -6.15 -39.03 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -4.92 Total: -3.41 kcal Atomic # 6 Polarization: 13.23 SS G_CDS: -0.52 Total: 12.71 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -0.26 Total: -46.88 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: 0.18 Total: -22.53 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.88 -6.15 -39.03 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094469774.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.091 kcal (2) G-P(sol) polarization free energy of solvation -32.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds