Wall clock time and date at job start Mon Mar 30 2020 03:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.08993 * 109.47768 * 305.00075 * 3 2 1 5 5 C 1.50709 * 109.46788 * 184.99743 * 3 2 1 6 6 H 1.07993 * 120.00197 * 240.00011 * 5 3 2 7 7 C 1.37877 * 119.99452 * 60.00810 * 5 3 2 8 8 N 1.31511 * 120.00437 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99741 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47169 * 59.99342 * 9 7 5 11 11 H 1.48493 * 109.47407 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46874 * 299.99809 * 9 7 5 13 13 N 1.46901 * 109.47168 * 65.00215 * 3 2 1 14 14 C 1.47076 * 110.99714 * 56.86284 * 13 3 2 15 15 C 1.50653 * 109.23737 * 180.46999 * 14 13 3 16 16 O 1.21232 * 119.67199 * 151.17157 * 15 14 13 17 17 N 1.34454 * 120.65596 * 331.12715 * 15 14 13 18 18 C 1.34444 * 121.35801 * 0.51424 * 17 15 14 19 19 O 1.21229 * 119.66873 * 179.48173 * 18 17 15 20 20 C 1.47068 * 111.00194 * 179.97438 * 13 3 2 21 21 H 1.08999 * 109.51651 * 299.52769 * 20 13 3 22 22 C 1.53004 * 109.50358 * 59.61860 * 20 13 3 23 23 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 25 25 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 26 26 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 27 27 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 28 28 H 0.96995 * 120.00258 * 180.02562 * 8 7 5 29 29 H 1.08992 * 109.51178 * 300.38542 * 14 13 3 30 30 H 1.09006 * 109.51179 * 60.52710 * 14 13 3 31 31 H 0.97002 * 119.31941 * 180.49170 * 17 15 14 32 32 H 1.08999 * 109.47681 * 59.99729 * 22 20 13 33 33 H 1.09004 * 109.47244 * 180.02562 * 22 20 13 34 34 H 1.08999 * 109.47071 * 299.99385 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4062 0.3369 -2.1729 9 14 6.0049 0.8815 -1.3819 10 1 6.5975 0.1475 -0.2350 11 1 6.3978 0.2171 -2.6504 12 1 6.4994 2.2817 -1.3821 13 7 1.6513 2.0993 1.2553 14 6 2.1589 1.3556 2.4182 15 6 1.7289 2.0555 3.6811 16 8 1.5612 1.4134 4.6957 17 7 1.5302 3.3852 3.6944 18 6 1.6972 4.1286 2.5867 19 8 1.5005 5.3240 2.6311 20 6 2.1261 3.4907 1.2911 21 1 3.2136 3.5064 1.2192 22 6 1.5252 4.2659 0.1168 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 3.8293 -0.0615 -2.9496 29 1 1.7549 0.3434 2.4076 30 1 3.2474 1.3143 2.3772 31 1 1.2604 3.8169 4.5201 32 1 0.4378 4.2514 0.1901 33 1 1.8778 5.2970 0.1436 34 1 1.8324 3.8016 -0.8203 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097290993.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:36 Heat of formation + Delta-G solvation = -68.040629 kcal Electronic energy + Delta-G solvation = -18344.063741 eV Core-core repulsion = 15470.058925 eV Total energy + Delta-G solvation = -2874.004816 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.09533 -38.54942 -37.46738 -34.52556 -33.16858 -31.75713 -30.22148 -27.61153 -25.60537 -24.53609 -22.84301 -21.95806 -19.64213 -18.80947 -17.51624 -17.24812 -16.22724 -15.88978 -15.21123 -14.76106 -14.34053 -14.25856 -13.76883 -13.18293 -12.99572 -12.59663 -12.35352 -12.11401 -11.50730 -11.37554 -11.28197 -11.08641 -10.98100 -10.79696 -10.29017 -10.05503 -9.98791 -9.97582 -9.83128 -9.64821 -9.31181 -8.54312 -7.68011 -6.20693 -4.36024 1.82005 3.00436 3.12124 3.16972 3.23396 3.25881 4.23278 4.33313 4.49943 5.06863 5.07254 5.45279 5.73252 5.78883 6.02434 6.17416 6.22263 6.28372 6.31096 6.44752 6.49789 6.66656 6.80297 6.93786 7.02730 7.10054 7.33868 7.44609 7.52362 7.60593 7.83114 7.88589 8.10668 8.15876 8.69103 9.33498 10.79408 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.022555 B = 0.009243 C = 0.008584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.135114 B = 3028.626547 C = 3261.153307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C 0.213 3.787 4 H 0.059 0.941 5 C -0.559 4.559 6 H 0.056 0.944 7 C 0.077 3.923 8 N -0.878 5.878 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.520 5.520 14 C 0.029 3.971 15 C 0.533 3.467 16 O -0.517 6.517 17 N -0.677 5.677 18 C 0.535 3.465 19 O -0.512 6.512 20 C 0.063 3.937 21 H 0.096 0.904 22 C -0.125 4.125 23 H 0.029 0.971 24 H 0.046 0.954 25 H 0.043 0.957 26 H 0.036 0.964 27 H 0.099 0.901 28 H 0.265 0.735 29 H 0.124 0.876 30 H 0.091 0.909 31 H 0.403 0.597 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.238 2.621 4.336 5.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C 0.108 3.892 4 H 0.076 0.924 5 C -0.598 4.598 6 H 0.074 0.926 7 C -0.128 4.128 8 N -0.514 5.514 9 Si 0.716 3.284 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.248 5.248 14 C -0.102 4.102 15 C 0.323 3.677 16 O -0.391 6.391 17 N -0.341 5.341 18 C 0.324 3.676 19 O -0.384 6.384 20 C -0.049 4.049 21 H 0.113 0.887 22 C -0.183 4.183 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.062 0.938 26 H 0.055 0.945 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.142 0.858 30 H 0.108 0.892 31 H 0.241 0.759 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.883 2.716 4.520 6.010 hybrid contribution 1.870 0.093 0.284 1.894 sum -1.012 2.810 4.803 5.656 Atomic orbital electron populations 1.21746 0.98509 0.98915 1.00763 1.21715 0.92565 0.98649 1.02616 1.19497 0.93641 0.91364 0.84744 0.92379 1.21546 0.92237 1.39816 1.06190 0.92579 1.24842 0.98038 0.94457 0.95425 1.69831 1.35213 1.37113 1.09288 0.86716 0.85695 0.78423 0.77606 1.20208 1.21102 1.20169 1.63287 1.57255 0.99685 1.04576 1.22488 1.01687 0.99521 0.86465 1.21515 0.73639 0.81050 0.91474 1.90722 1.48095 1.64832 1.35407 1.45114 1.64300 1.10225 1.14507 1.21483 0.73732 0.86755 0.85611 1.90699 1.47292 1.15044 1.85377 1.21813 1.01021 0.91111 0.90937 0.88663 1.21616 1.00740 0.98873 0.97077 0.95187 0.93520 0.93832 0.94524 0.88309 0.92443 0.85801 0.89154 0.75901 0.92363 0.91941 0.89736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.80 37.16 0.36 -2.20 16 2 C -0.12 -2.40 4.95 -26.73 -0.13 -2.54 16 3 C 0.21 4.42 1.42 -68.86 -0.10 4.32 16 4 H 0.06 1.33 6.30 -51.93 -0.33 1.00 16 5 C -0.56 -12.79 7.05 -34.44 -0.24 -13.04 16 6 H 0.06 1.27 5.76 -52.49 -0.30 0.97 16 7 C 0.08 1.85 5.29 -17.82 -0.09 1.76 16 8 N -0.88 -22.06 11.29 55.43 0.63 -21.43 16 9 Si 0.89 19.17 29.54 -169.99 -5.02 14.15 16 10 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 11 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 12 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 13 N -0.52 -9.38 4.04 -222.68 -0.90 -10.28 16 14 C 0.03 0.49 4.88 -4.90 -0.02 0.47 16 15 C 0.53 8.82 7.88 -11.15 -0.09 8.74 16 16 O -0.52 -9.58 17.91 5.60 0.10 -9.48 16 17 N -0.68 -10.31 5.16 -11.57 -0.06 -10.37 16 18 C 0.53 8.88 7.57 -11.16 -0.08 8.79 16 19 O -0.51 -9.34 16.99 5.60 0.10 -9.25 16 20 C 0.06 1.08 2.28 -68.79 -0.16 0.92 16 21 H 0.10 1.71 6.49 -51.93 -0.34 1.37 16 22 C -0.13 -2.07 8.55 37.16 0.32 -1.75 16 23 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.81 7.75 -51.93 -0.40 0.41 16 25 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.73 6.07 -51.93 -0.32 0.41 16 27 H 0.10 2.31 5.95 -51.93 -0.31 2.00 16 28 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 29 H 0.12 2.12 6.12 -51.93 -0.32 1.81 16 30 H 0.09 1.58 6.69 -51.93 -0.35 1.23 16 31 H 0.40 5.39 8.84 -40.82 -0.36 5.03 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.97 7.85 -51.93 -0.41 0.56 16 34 H 0.08 1.50 6.41 -51.93 -0.33 1.17 16 LS Contribution 272.89 15.07 4.11 4.11 Total: -1.00 -25.55 272.89 -5.45 -31.00 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -4.16 Total: 6.06 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -0.24 Total: 5.48 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: -0.33 Total: -42.07 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: 0.20 Total: -18.73 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.02 Total: 14.15 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -25.55 -5.45 -31.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097290993.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.039 kcal (2) G-P(sol) polarization free energy of solvation -25.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds