Wall clock time and date at job start Mon Mar 30 2020 03:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.08993 * 109.47768 * 305.00075 * 3 2 1 5 5 C 1.50709 * 109.46788 * 184.99743 * 3 2 1 6 6 H 1.07993 * 120.00197 * 240.00011 * 5 3 2 7 7 C 1.37877 * 119.99452 * 60.00810 * 5 3 2 8 8 N 1.31511 * 120.00437 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99741 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47169 * 59.99342 * 9 7 5 11 11 H 1.48493 * 109.47407 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46874 * 299.99809 * 9 7 5 13 13 N 1.46901 * 109.47168 * 65.00215 * 3 2 1 14 14 C 1.47076 * 110.99714 * 56.86284 * 13 3 2 15 15 C 1.50653 * 109.23737 * 180.46999 * 14 13 3 16 16 O 1.21232 * 119.67199 * 151.17157 * 15 14 13 17 17 N 1.34454 * 120.65596 * 331.12715 * 15 14 13 18 18 C 1.34444 * 121.35801 * 0.51424 * 17 15 14 19 19 O 1.21229 * 119.66873 * 179.48173 * 18 17 15 20 20 C 1.47068 * 111.00194 * 179.97438 * 13 3 2 21 21 H 1.08999 * 109.51651 * 299.52769 * 20 13 3 22 22 C 1.53004 * 109.50358 * 59.61860 * 20 13 3 23 23 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 25 25 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 26 26 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 27 27 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 28 28 H 0.96995 * 120.00258 * 180.02562 * 8 7 5 29 29 H 1.08992 * 109.51178 * 300.38542 * 14 13 3 30 30 H 1.09006 * 109.51179 * 60.52710 * 14 13 3 31 31 H 0.97002 * 119.31941 * 180.49170 * 17 15 14 32 32 H 1.08999 * 109.47681 * 59.99729 * 22 20 13 33 33 H 1.09004 * 109.47244 * 180.02562 * 22 20 13 34 34 H 1.08999 * 109.47071 * 299.99385 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5419 1.4444 -0.1238 6 1 4.1472 1.8889 0.6523 7 6 4.1432 0.8786 -1.2280 8 7 3.4062 0.3369 -2.1729 9 14 6.0049 0.8815 -1.3819 10 1 6.5975 0.1475 -0.2350 11 1 6.3978 0.2171 -2.6504 12 1 6.4994 2.2817 -1.3821 13 7 1.6513 2.0993 1.2553 14 6 2.1589 1.3556 2.4182 15 6 1.7289 2.0555 3.6811 16 8 1.5612 1.4134 4.6957 17 7 1.5302 3.3852 3.6944 18 6 1.6972 4.1286 2.5867 19 8 1.5005 5.3240 2.6311 20 6 2.1261 3.4907 1.2911 21 1 3.2136 3.5064 1.2192 22 6 1.5252 4.2659 0.1168 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 3.8293 -0.0615 -2.9496 29 1 1.7549 0.3434 2.4076 30 1 3.2474 1.3143 2.3772 31 1 1.2604 3.8169 4.5201 32 1 0.4378 4.2514 0.1901 33 1 1.8778 5.2970 0.1436 34 1 1.8324 3.8016 -0.8203 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097290993.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:36 Heat of formation + Delta-G solvation = -85.848662 kcal Electronic energy + Delta-G solvation = -18344.835955 eV Core-core repulsion = 15470.058925 eV Total energy + Delta-G solvation = -2874.777030 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.49279 -39.96027 -38.99965 -35.95023 -34.79302 -33.40029 -31.65841 -29.22957 -27.13341 -26.05351 -24.37049 -23.37932 -21.24216 -20.27176 -18.93857 -18.67822 -17.89769 -17.33675 -16.77483 -16.28973 -15.81148 -15.75580 -15.27925 -14.64025 -14.60864 -14.09996 -13.84478 -13.62436 -13.15264 -12.90701 -12.83329 -12.60915 -12.47267 -12.43381 -11.98282 -11.60776 -11.55254 -11.34813 -11.32325 -11.22132 -10.93125 -10.35704 -9.24979 -8.02808 -6.22570 0.44091 1.44635 1.48927 1.52088 1.64617 1.78527 2.44589 2.92315 3.01830 3.23348 3.68728 4.04181 4.31983 4.39109 4.58911 4.73259 4.76027 4.88979 4.94891 4.99999 5.08749 5.25542 5.27905 5.42668 5.49495 5.61944 5.70082 5.83197 5.85292 6.10687 6.15870 6.28738 6.42942 6.79651 6.91475 7.48700 8.94489 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.022555 B = 0.009243 C = 0.008584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.135114 B = 3028.626547 C = 3261.153307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 C 0.221 3.779 4 H 0.038 0.962 5 C -0.557 4.557 6 H 0.058 0.942 7 C 0.036 3.964 8 N -0.902 5.902 9 Si 0.937 3.063 10 H -0.275 1.275 11 H -0.291 1.291 12 H -0.275 1.275 13 N -0.516 5.516 14 C 0.030 3.970 15 C 0.546 3.454 16 O -0.532 6.532 17 N -0.665 5.665 18 C 0.546 3.454 19 O -0.523 6.523 20 C 0.060 3.940 21 H 0.091 0.909 22 C -0.119 4.119 23 H 0.044 0.956 24 H 0.053 0.947 25 H 0.037 0.963 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.262 0.738 29 H 0.126 0.874 30 H 0.089 0.911 31 H 0.415 0.585 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.335 3.007 5.363 6.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.152 4.152 3 C 0.115 3.885 4 H 0.055 0.945 5 C -0.596 4.596 6 H 0.076 0.924 7 C -0.166 4.166 8 N -0.541 5.541 9 Si 0.764 3.236 10 H -0.201 1.201 11 H -0.217 1.217 12 H -0.201 1.201 13 N -0.243 5.243 14 C -0.100 4.100 15 C 0.336 3.664 16 O -0.406 6.406 17 N -0.330 5.330 18 C 0.336 3.664 19 O -0.397 6.397 20 C -0.051 4.051 21 H 0.108 0.892 22 C -0.176 4.176 23 H 0.063 0.937 24 H 0.072 0.928 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.088 0.912 28 H 0.071 0.929 29 H 0.144 0.856 30 H 0.107 0.893 31 H 0.256 0.744 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.982 3.118 5.572 7.047 hybrid contribution 1.891 -0.003 -0.009 1.891 sum -1.091 3.115 5.563 6.468 Atomic orbital electron populations 1.21626 0.96507 0.99944 1.00803 1.21588 0.94318 0.97997 1.01344 1.19244 0.92371 0.91545 0.85309 0.94462 1.21834 0.93491 1.38587 1.05712 0.92373 1.25404 1.00823 0.94757 0.95610 1.69947 1.36176 1.38246 1.09690 0.85948 0.82394 0.78151 0.77123 1.20089 1.21660 1.20056 1.63192 1.57211 1.00025 1.03868 1.22470 1.01610 0.99644 0.86289 1.21226 0.73142 0.81202 0.90789 1.90731 1.48876 1.65202 1.35828 1.44888 1.63674 1.09693 1.14744 1.21181 0.73348 0.86396 0.85494 1.90708 1.47918 1.15521 1.85508 1.21837 1.00803 0.90696 0.91777 0.89192 1.21539 1.00937 0.99160 0.95995 0.93703 0.92761 0.94383 0.94117 0.91191 0.92851 0.85623 0.89318 0.74436 0.91948 0.90897 0.91328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.56 9.80 71.98 0.71 -3.85 16 2 C -0.11 -4.61 4.95 30.60 0.15 -4.46 16 3 C 0.22 9.09 1.42 44.17 0.06 9.15 16 4 H 0.04 1.72 6.30 -2.39 -0.02 1.70 16 5 C -0.56 -25.20 7.05 25.60 0.18 -25.02 16 6 H 0.06 2.57 5.76 -2.91 -0.02 2.55 16 7 C 0.04 1.71 5.29 84.66 0.45 2.16 16 8 N -0.90 -45.76 11.29 21.45 0.24 -45.52 16 9 Si 0.94 39.09 29.54 68.60 2.03 41.11 16 10 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 12 H -0.28 -11.34 7.11 99.48 0.71 -10.64 16 13 N -0.52 -17.89 4.04 -858.43 -3.47 -21.36 16 14 C 0.03 0.98 4.88 85.51 0.42 1.40 16 15 C 0.55 16.85 7.88 87.69 0.69 17.54 16 16 O -0.53 -18.51 17.91 -2.88 -0.05 -18.56 16 17 N -0.67 -18.63 5.16 -427.72 -2.21 -20.84 16 18 C 0.55 16.94 7.57 87.69 0.66 17.60 16 19 O -0.52 -17.90 16.99 -2.87 -0.05 -17.95 16 20 C 0.06 1.99 2.28 44.12 0.10 2.09 16 21 H 0.09 3.11 6.49 -2.39 -0.02 3.10 16 22 C -0.12 -3.79 8.55 71.98 0.62 -3.17 16 23 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.05 1.79 7.75 -2.39 -0.02 1.77 16 25 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.04 1.58 6.07 -2.39 -0.01 1.56 16 27 H 0.07 3.29 5.95 -2.39 -0.01 3.27 16 28 H 0.26 12.97 8.31 -92.71 -0.77 12.20 16 29 H 0.13 4.08 6.12 -2.39 -0.01 4.06 16 30 H 0.09 2.96 6.69 -2.38 -0.02 2.94 16 31 H 0.42 10.00 8.84 -92.71 -0.82 9.18 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 2.16 7.85 -2.38 -0.02 2.14 16 34 H 0.07 2.42 6.41 -2.39 -0.02 2.40 16 Total: -1.00 -51.91 272.89 0.84 -51.08 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.31 Total: 18.61 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 4.04 Total: 13.44 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -5.44 Total: -87.72 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.10 Total: -36.51 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.11 kcal Total: -51.91 0.84 -51.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097290993.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.772 kcal (2) G-P(sol) polarization free energy of solvation -51.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds