Wall clock time and date at job start Mon Mar 30 2020 04:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.50644 * 2 1 4 4 C 1.50648 * 109.65426 * 240.07425 * 2 1 3 5 5 O 1.21230 * 119.66980 * 31.30114 * 4 2 1 6 6 N 1.34452 * 120.65973 * 211.54293 * 4 2 1 7 7 C 1.34454 * 121.35766 * 359.95041 * 6 4 2 8 8 O 1.21225 * 119.67016 * 179.82457 * 7 6 4 9 9 C 1.50657 * 120.65330 * 359.79959 * 7 6 4 10 10 N 1.47066 * 109.24809 * 28.83899 * 9 7 6 11 11 C 1.46899 * 111.00236 * 66.53955 * 10 9 7 12 12 C 1.53005 * 109.46649 * 64.44380 * 11 10 9 13 13 C 1.53000 * 109.46719 * 174.66095 * 12 11 10 14 14 C 1.50699 * 109.46929 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00208 * 0.02562 * 14 13 12 16 16 C 1.37882 * 119.99753 * 180.02562 * 14 13 12 17 17 N 1.31507 * 120.00456 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 119.99792 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47202 * 89.99830 * 18 16 14 20 20 H 1.48498 * 109.47259 * 209.99957 * 18 16 14 21 21 H 1.48504 * 109.46995 * 329.99823 * 18 16 14 22 22 H 1.09008 * 109.46911 * 299.90773 * 1 2 3 23 23 H 1.08996 * 109.47391 * 59.90921 * 1 2 3 24 24 H 1.09001 * 109.47089 * 179.91269 * 1 2 3 25 25 H 0.96993 * 119.32488 * 180.22669 * 6 4 2 26 26 H 1.08997 * 109.50793 * 148.76862 * 9 7 6 27 27 H 1.09003 * 109.50883 * 268.90494 * 9 7 6 28 28 H 1.09003 * 109.47385 * 184.44200 * 11 10 9 29 29 H 1.08995 * 109.47253 * 304.44560 * 11 10 9 30 30 H 1.08995 * 109.47104 * 294.65695 * 12 11 10 31 31 H 1.08995 * 109.47438 * 54.66581 * 12 11 10 32 32 H 1.09000 * 109.47462 * 299.99759 * 13 12 11 33 33 H 1.09007 * 109.47133 * 60.00292 * 13 12 11 34 34 H 0.96996 * 120.00231 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0367 -0.7078 -1.2296 5 8 1.3909 -0.6664 -2.2547 6 7 3.1955 -1.3889 -1.2000 7 6 3.9368 -1.4602 -0.0805 8 8 4.9753 -2.0855 -0.0873 9 6 3.4898 -0.7702 1.1820 10 7 2.0211 -0.6951 1.1995 11 6 1.4268 -2.0337 1.3126 12 6 1.8101 -2.6497 2.6597 13 6 1.0845 -3.9852 2.8346 14 6 1.4625 -4.5922 4.1612 15 1 2.1510 -4.0768 4.8144 16 6 0.9292 -5.8057 4.5410 17 7 0.0912 -6.4337 3.7455 18 14 1.3972 -6.5578 6.1856 19 1 0.4478 -6.0951 7.2296 20 1 1.3411 -8.0384 6.0868 21 1 2.7747 -6.1378 6.5480 22 1 -0.3633 0.5124 0.8909 23 1 -0.3634 0.5152 -0.8891 24 1 -0.3633 -1.0277 -0.0016 25 1 3.5052 -1.8346 -2.0038 26 1 3.8356 -1.3352 2.0476 27 1 3.9062 0.2366 1.2136 28 1 0.3417 -1.9565 1.2439 29 1 1.7978 -2.6654 0.5055 30 1 2.8871 -2.8145 2.6905 31 1 1.5230 -1.9722 3.4638 32 1 0.0075 -3.8204 2.8038 33 1 1.3716 -4.6628 2.0304 34 1 -0.2841 -7.2872 4.0128 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097291020.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:38 Heat of formation + Delta-G solvation = -71.304986 kcal Electronic energy + Delta-G solvation = -17539.894323 eV Core-core repulsion = 14665.747954 eV Total energy + Delta-G solvation = -2874.146369 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.87405 -39.00059 -37.60613 -34.79481 -33.86156 -31.98726 -30.94967 -27.79139 -26.11383 -24.65165 -22.83934 -22.53413 -20.53247 -18.76665 -17.93400 -17.67786 -16.49176 -16.23398 -15.81734 -15.21413 -14.83965 -14.61678 -14.39060 -14.08099 -13.74627 -12.50724 -12.47734 -12.30347 -12.13137 -11.87016 -11.63561 -11.55830 -11.11887 -10.84529 -10.60217 -10.54470 -10.37257 -10.32715 -9.74735 -9.43596 -9.13026 -8.66724 -8.37163 -6.02176 -4.04771 1.33875 2.54133 2.57967 3.31521 3.37904 3.41118 3.59879 3.61867 4.44664 4.54536 4.59768 4.81048 4.95891 5.30220 5.34430 5.49877 5.53289 5.65228 5.67464 5.80255 5.93783 6.14105 6.32282 6.41792 6.59468 6.76173 6.89854 7.04542 7.18698 7.62226 7.64283 7.74845 7.96537 8.38608 9.01967 9.59703 11.09262 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.032223 B = 0.005614 C = 0.005260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.725167 B = 4986.573271 C = 5322.182964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.062 3.938 3 H 0.126 0.874 4 C 0.496 3.504 5 O -0.499 6.499 6 N -0.680 5.680 7 C 0.495 3.505 8 O -0.497 6.497 9 C 0.029 3.971 10 N -0.509 5.509 11 C 0.034 3.966 12 C -0.106 4.106 13 C 0.023 3.977 14 C -0.520 4.520 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.273 1.273 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.407 0.593 26 H 0.136 0.864 27 H 0.121 0.879 28 H 0.092 0.908 29 H 0.031 0.969 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.018 0.982 33 H 0.013 0.987 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.440 14.656 -7.169 16.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.050 4.050 3 H 0.143 0.857 4 C 0.283 3.717 5 O -0.370 6.370 6 N -0.346 5.346 7 C 0.282 3.718 8 O -0.367 6.367 9 C -0.101 4.101 10 N -0.233 5.233 11 C -0.092 4.092 12 C -0.144 4.144 13 C -0.015 4.015 14 C -0.559 4.559 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.535 5.535 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.198 1.198 22 H 0.102 0.898 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.246 0.754 26 H 0.154 0.846 27 H 0.139 0.861 28 H 0.110 0.890 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.036 0.964 33 H 0.031 0.969 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.325 14.554 -7.121 16.540 hybrid contribution 0.695 -1.304 -0.344 1.517 sum 4.020 13.250 -7.466 15.730 Atomic orbital electron populations 1.21827 0.90162 1.04084 1.03651 1.22295 0.99210 0.99369 0.84142 0.85692 1.22438 0.79418 0.77690 0.92198 1.90745 1.54818 1.57927 1.33481 1.45332 1.23011 1.50550 1.15734 1.22440 0.83499 0.79976 0.85921 1.90784 1.23025 1.38474 1.84416 1.22915 0.89167 1.03243 0.94817 1.62694 1.04359 1.21267 1.34999 1.22753 1.00926 0.85449 1.00088 1.21709 1.00211 0.99247 0.93241 1.19061 0.95507 0.89953 0.96980 1.21209 1.26888 1.04617 1.03137 0.92553 1.25025 0.95109 0.97121 0.97196 1.69956 1.30899 1.16014 1.36630 0.86586 0.78937 0.78325 0.84121 1.20612 1.21263 1.19833 0.89827 0.90640 0.91220 0.75384 0.84585 0.86116 0.88994 0.95088 0.93275 0.91703 0.96397 0.96874 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 8.38 37.16 0.31 -1.08 16 2 C 0.06 0.63 3.02 -68.79 -0.21 0.42 16 3 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 4 C 0.50 6.10 6.71 -11.16 -0.07 6.03 16 5 O -0.50 -7.38 17.00 5.60 0.10 -7.28 16 6 N -0.68 -8.32 4.88 -11.57 -0.06 -8.37 16 7 C 0.49 6.51 6.81 -11.15 -0.08 6.43 16 8 O -0.50 -8.18 17.90 5.60 0.10 -8.08 16 9 C 0.03 0.32 5.79 -4.91 -0.03 0.29 16 10 N -0.51 -6.03 4.88 -229.24 -1.12 -7.15 16 11 C 0.03 0.53 4.18 -3.82 -0.02 0.51 16 12 C -0.11 -2.02 4.91 -26.73 -0.13 -2.15 16 13 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 14 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 18 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 23 H 0.07 0.70 7.85 -51.93 -0.41 0.30 16 24 H 0.07 0.81 6.17 -51.93 -0.32 0.49 16 25 H 0.41 4.69 8.84 -40.82 -0.36 4.33 16 26 H 0.14 1.62 6.25 -51.93 -0.32 1.30 16 27 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.09 1.41 5.78 -51.93 -0.30 1.11 16 29 H 0.03 0.52 6.51 -51.93 -0.34 0.18 16 30 H 0.05 0.93 6.64 -51.93 -0.34 0.58 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 LS Contribution 281.08 15.07 4.24 4.24 Total: -1.00 -32.61 281.08 -6.27 -38.88 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -4.47 Total: -0.29 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -0.77 Total: -2.39 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: -0.44 Total: -41.58 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: 0.20 Total: -15.36 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.61 -6.27 -38.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097291020.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.420 kcal (2) G-P(sol) polarization free energy of solvation -32.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds