Wall clock time and date at job start Mon Mar 30 2020 04:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.54316 * 2 1 4 4 C 1.50647 * 109.51748 * 120.09509 * 2 1 3 5 5 O 1.21223 * 119.67351 * 328.74166 * 4 2 1 6 6 N 1.34454 * 120.65470 * 148.73928 * 4 2 1 7 7 C 1.34450 * 121.35857 * 359.57179 * 6 4 2 8 8 O 1.21224 * 119.67051 * 180.42843 * 7 6 4 9 9 C 1.50655 * 120.65695 * 0.45233 * 7 6 4 10 10 N 1.47069 * 109.50804 * 239.88604 * 2 1 3 11 11 C 1.46904 * 111.00192 * 59.61390 * 10 2 1 12 12 C 1.52994 * 109.47264 * 189.17888 * 11 10 2 13 13 C 1.53001 * 109.47367 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.46995 * 180.02562 * 13 12 11 15 15 H 1.07991 * 120.00449 * 359.72153 * 14 13 12 16 16 C 1.37885 * 119.99686 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.72095 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.72528 * 16 14 13 19 19 H 1.48490 * 109.47339 * 359.97438 * 18 16 14 20 20 H 1.48493 * 109.47239 * 120.00108 * 18 16 14 21 21 H 1.48504 * 109.46636 * 239.99667 * 18 16 14 22 22 H 1.08997 * 109.47539 * 180.11314 * 1 2 3 23 23 H 1.09004 * 109.47271 * 300.11874 * 1 2 3 24 24 H 1.09009 * 109.46862 * 60.11171 * 1 2 3 25 25 H 0.96998 * 119.31803 * 179.55137 * 6 4 2 26 26 H 1.09001 * 109.50912 * 211.23484 * 9 7 6 27 27 H 1.09002 * 109.50718 * 91.09027 * 9 7 6 28 28 H 1.08998 * 109.47046 * 69.17565 * 11 10 2 29 29 H 1.09001 * 109.47014 * 309.17765 * 11 10 2 30 30 H 1.08998 * 109.47353 * 59.99865 * 12 11 10 31 31 H 1.09006 * 109.47395 * 300.00120 * 12 11 10 32 32 H 1.08998 * 109.47065 * 59.99602 * 13 12 11 33 33 H 1.09001 * 109.46892 * 299.99866 * 13 12 11 34 34 H 0.97000 * 119.99651 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8946 1.0272 0.0000 4 6 2.0333 -0.7120 1.2285 5 8 1.3852 -0.6736 2.2522 6 7 3.1942 -1.3897 1.2008 7 6 3.9358 -1.4616 0.0816 8 8 4.9739 -2.0876 0.0888 9 6 3.4898 -0.7716 -1.1812 10 7 2.0211 -0.6955 -1.1992 11 6 1.5431 -0.0374 -2.4224 12 6 1.8772 -0.9090 -3.6345 13 6 1.3799 -0.2233 -4.9086 14 6 1.7086 -1.0823 -6.1024 15 1 2.2249 -2.0210 -5.9665 16 6 1.3547 -0.6671 -7.3687 17 7 0.7254 0.4759 -7.5342 18 14 1.7688 -1.7282 -8.8492 19 1 2.4733 -2.9549 -8.3976 20 1 0.5171 -2.1063 -9.5530 21 1 2.6460 -0.9664 -9.7743 22 1 -0.3634 -1.0276 0.0020 23 1 -0.3634 0.5157 0.8889 24 1 -0.3633 0.5121 -0.8911 25 1 3.5032 -1.8356 2.0049 26 1 3.8356 -1.3370 -2.0466 27 1 3.9068 0.2350 -1.2127 28 1 2.0295 0.9324 -2.5271 29 1 0.4637 0.1022 -2.3618 30 1 1.3908 -1.8788 -3.5299 31 1 2.9566 -1.0487 -3.6952 32 1 1.8667 0.7463 -5.0131 33 1 0.3006 -0.0833 -4.8483 34 1 0.4761 0.7677 -8.4250 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097291021.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:41 Heat of formation + Delta-G solvation = -74.681786 kcal Electronic energy + Delta-G solvation = -17171.066894 eV Core-core repulsion = 14296.774097 eV Total energy + Delta-G solvation = -2874.292798 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.63134 -39.05342 -37.78743 -34.94851 -33.85504 -32.00538 -30.93577 -27.95820 -26.07882 -24.77520 -22.88160 -22.01736 -20.25163 -19.36095 -17.95469 -17.82585 -16.55177 -16.17179 -15.57163 -15.05132 -14.91524 -14.85744 -14.38366 -13.92674 -13.71714 -13.15430 -12.63922 -12.29857 -11.99340 -11.88798 -11.77848 -11.41869 -10.92867 -10.74918 -10.61284 -10.49362 -10.43347 -10.36742 -9.75189 -9.44188 -9.13009 -8.68912 -8.39338 -6.04735 -4.06873 1.31463 2.44994 2.58654 3.29111 3.37119 3.41215 3.55909 3.67667 4.37031 4.43414 4.62676 4.86050 4.99640 5.23221 5.32003 5.52470 5.55483 5.58707 5.70215 5.80342 5.98778 6.15518 6.34042 6.41013 6.58779 6.72923 6.92931 7.03460 7.13957 7.60975 7.62020 7.73114 7.94711 8.37247 9.00378 9.57927 11.06632 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.036550 B = 0.004908 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.882076 B = 5703.421546 C = 6289.037363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.054 3.946 3 H 0.086 0.914 4 C 0.538 3.462 5 O -0.499 6.499 6 N -0.675 5.675 7 C 0.535 3.465 8 O -0.500 6.500 9 C 0.025 3.975 10 N -0.526 5.526 11 C 0.050 3.950 12 C -0.108 4.108 13 C 0.022 3.978 14 C -0.520 4.520 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.896 5.896 18 Si 0.891 3.109 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.410 0.590 26 H 0.136 0.864 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.088 0.912 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.015 0.985 33 H 0.018 0.982 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.258 0.804 15.032 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.057 4.057 3 H 0.104 0.896 4 C 0.326 3.674 5 O -0.370 6.370 6 N -0.340 5.340 7 C 0.324 3.676 8 O -0.372 6.372 9 C -0.105 4.105 10 N -0.254 5.254 11 C -0.075 4.075 12 C -0.146 4.146 13 C -0.016 4.016 14 C -0.558 4.558 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.535 5.535 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 H 0.090 0.910 23 H 0.093 0.907 24 H 0.097 0.903 25 H 0.250 0.750 26 H 0.154 0.846 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.036 0.964 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.137 0.225 15.272 15.422 hybrid contribution 0.723 0.097 -0.552 0.915 sum 2.860 0.321 14.720 14.999 Atomic orbital electron populations 1.21768 0.90103 1.04131 1.03350 1.21992 0.99275 0.96708 0.87711 0.89611 1.20961 0.79159 0.76857 0.90423 1.90758 1.55035 1.58216 1.33012 1.45029 1.22830 1.50535 1.15605 1.21052 0.82771 0.79039 0.84779 1.90791 1.23046 1.38839 1.84478 1.22642 0.89826 1.01948 0.96132 1.62761 1.07112 1.52840 1.02683 1.22566 1.01249 0.96201 0.87517 1.21717 1.00396 0.98954 0.93534 1.19073 0.96555 0.95697 0.90231 1.21262 1.37407 1.05708 0.91416 0.92556 1.25016 0.95176 0.95116 0.99111 1.69967 1.40339 1.20795 1.22430 0.86548 0.78123 0.80602 0.82820 1.19693 1.21009 1.21047 0.90993 0.90737 0.90296 0.75027 0.84584 0.89805 0.94054 0.89391 0.92126 0.93205 0.96684 0.96413 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.58 37.16 0.32 -1.06 16 2 C 0.05 0.57 2.60 -68.80 -0.18 0.40 16 3 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.54 6.19 7.57 -11.16 -0.08 6.11 16 5 O -0.50 -6.83 16.99 5.61 0.10 -6.73 16 6 N -0.67 -7.29 5.16 -11.57 -0.06 -7.35 16 7 C 0.54 6.47 7.88 -11.15 -0.09 6.38 16 8 O -0.50 -7.46 17.90 5.61 0.10 -7.36 16 9 C 0.02 0.28 5.34 -4.90 -0.03 0.26 16 10 N -0.53 -6.38 4.56 -229.25 -1.05 -7.43 16 11 C 0.05 0.70 4.75 -3.82 -0.02 0.68 16 12 C -0.11 -1.96 5.08 -26.73 -0.14 -2.10 16 13 C 0.02 0.52 4.97 -27.88 -0.14 0.39 16 14 C -0.52 -14.09 9.11 -34.44 -0.31 -14.41 16 15 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.08 13.29 55.43 0.74 -25.35 16 18 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 19 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.07 0.70 7.85 -51.93 -0.41 0.30 16 24 H 0.08 0.76 6.22 -51.92 -0.32 0.44 16 25 H 0.41 3.89 8.84 -40.82 -0.36 3.52 16 26 H 0.14 1.66 6.46 -51.93 -0.34 1.33 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.55 8.12 -51.93 -0.42 0.13 16 29 H 0.09 1.20 5.86 -51.93 -0.30 0.89 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.88 6.55 -51.93 -0.34 0.54 16 32 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 284.89 15.07 4.29 4.29 Total: -1.00 -31.14 284.89 -6.23 -37.37 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -4.57 Total: -1.72 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -0.76 Total: -1.86 kcal Atomic # 7 Polarization: -39.75 SS G_CDS: -0.37 Total: -40.12 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.20 Total: -14.10 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.14 -6.23 -37.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097291021.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.309 kcal (2) G-P(sol) polarization free energy of solvation -31.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds