Wall clock time and date at job start Mon Mar 30 2020 04:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47086 * 2 1 4 4 C 1.50695 * 109.47489 * 239.99244 * 2 1 3 5 5 H 1.07999 * 120.00692 * 245.48938 * 4 2 1 6 6 C 1.37885 * 119.99537 * 65.48449 * 4 2 1 7 7 N 1.31509 * 120.00029 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99825 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46758 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.46966 * 119.99870 * 8 6 4 11 11 H 1.48498 * 109.46981 * 240.00332 * 8 6 4 12 12 N 1.46898 * 109.46680 * 119.99383 * 2 1 3 13 13 C 1.47069 * 111.00195 * 73.22934 * 12 2 1 14 14 C 1.50653 * 109.24940 * 180.45377 * 13 12 2 15 15 O 1.21225 * 119.67504 * 151.16262 * 14 13 12 16 16 N 1.34446 * 120.65291 * 331.16066 * 14 13 12 17 17 C 1.34453 * 121.36435 * 0.46893 * 16 14 13 18 18 O 1.21228 * 119.67284 * 179.80718 * 17 16 14 19 19 C 1.47079 * 110.99879 * 196.35600 * 12 2 1 20 20 C 1.53000 * 109.50403 * 59.61727 * 19 12 2 21 21 C 1.52994 * 109.54439 * 299.50445 * 19 12 2 22 22 H 1.08994 * 109.47085 * 62.55237 * 1 2 3 23 23 H 1.09002 * 109.46994 * 182.55175 * 1 2 3 24 24 H 1.09001 * 109.47101 * 302.54837 * 1 2 3 25 25 H 0.97003 * 119.99943 * 180.02562 * 7 6 4 26 26 H 1.09001 * 109.50576 * 300.38270 * 13 12 2 27 27 H 1.08997 * 109.51211 * 60.52008 * 13 12 2 28 28 H 0.97007 * 119.32034 * 180.49902 * 16 14 13 29 29 H 1.09003 * 109.47034 * 173.09711 * 20 19 12 30 30 H 1.09000 * 109.47183 * 293.08949 * 20 19 12 31 31 H 1.08997 * 109.47603 * 53.09617 * 20 19 12 32 32 H 1.09002 * 109.47037 * 300.20075 * 21 19 12 33 33 H 1.08994 * 109.47792 * 60.20247 * 21 19 12 34 34 H 1.09004 * 109.47110 * 180.20331 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7105 -1.2303 5 1 2.5783 -1.6374 -1.1337 6 6 1.7951 -0.1773 -2.4795 7 7 1.1308 0.9515 -2.5972 8 14 2.4173 -1.0584 -4.0047 9 1 3.1290 -2.2986 -3.6041 10 1 1.2680 -1.4078 -4.8778 11 1 3.3488 -0.1694 -4.7445 12 7 2.0196 -0.6924 1.1995 13 6 1.8218 -2.1454 1.0871 14 6 2.3259 -2.8136 2.3396 15 8 1.8273 -3.8560 2.7061 16 7 3.3235 -2.2654 3.0551 17 6 3.8947 -1.1058 2.6851 18 8 4.7899 -0.6372 3.3549 19 6 3.4375 -0.3864 1.4429 20 6 3.6091 1.1219 1.6337 21 6 4.2733 -0.8487 0.2478 22 1 -0.3633 0.4737 -0.9119 23 1 -0.3633 -1.0267 0.0458 24 1 -0.3633 0.5529 0.8663 25 1 0.9635 1.3265 -3.4761 26 1 0.7603 -2.3595 0.9623 27 1 2.3735 -2.5224 0.2261 28 1 3.6380 -2.7160 3.8545 29 1 4.6348 1.3357 1.9345 30 1 3.3913 1.6338 0.6964 31 1 2.9238 1.4709 2.4061 32 1 4.1493 -1.9230 0.1114 33 1 3.9421 -0.3278 -0.6506 34 1 5.3242 -0.6246 0.4310 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097300766.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:26 Heat of formation + Delta-G solvation = -73.023637 kcal Electronic energy + Delta-G solvation = -18665.507407 eV Core-core repulsion = 15791.286512 eV Total energy + Delta-G solvation = -2874.220895 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.73927 -40.03637 -39.20659 -35.89589 -34.89491 -33.16404 -30.98860 -28.73570 -27.35480 -26.92295 -25.37229 -23.36138 -21.67743 -19.43377 -18.95280 -18.78614 -17.90619 -17.24234 -16.68509 -16.31146 -15.76678 -15.61458 -15.35136 -14.79916 -14.31040 -14.24616 -13.70651 -13.33514 -13.08831 -13.01564 -12.77981 -12.66342 -12.45051 -12.36184 -12.24486 -11.87077 -11.73221 -11.40037 -11.35700 -11.17651 -10.79563 -10.38874 -9.23157 -8.03523 -6.14128 0.43172 1.43952 1.51702 1.56127 1.64909 1.75993 2.46447 2.91370 3.00394 3.24510 3.64710 3.93864 4.07372 4.34029 4.58068 4.75275 4.83543 4.86516 4.92465 5.03551 5.06503 5.17721 5.22117 5.32455 5.50945 5.55331 5.67987 5.79575 5.86546 6.10019 6.15578 6.26191 6.41707 6.78939 6.94476 7.51069 8.98331 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.026758 B = 0.009443 C = 0.008852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.154482 B = 2964.496740 C = 3162.320039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.208 3.792 3 H 0.044 0.956 4 C -0.543 4.543 5 H 0.074 0.926 6 C 0.033 3.967 7 N -0.907 5.907 8 Si 0.933 3.067 9 H -0.266 1.266 10 H -0.291 1.291 11 H -0.288 1.288 12 N -0.517 5.517 13 C 0.029 3.971 14 C 0.544 3.456 15 O -0.533 6.533 16 N -0.666 5.666 17 C 0.550 3.450 18 O -0.521 6.521 19 C 0.090 3.910 20 C -0.120 4.120 21 C -0.176 4.176 22 H 0.054 0.946 23 H 0.034 0.966 24 H 0.029 0.971 25 H 0.261 0.739 26 H 0.121 0.879 27 H 0.099 0.901 28 H 0.415 0.585 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.108 0.892 34 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.685 -2.659 5.236 6.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.102 3.898 3 H 0.062 0.938 4 C -0.582 4.582 5 H 0.092 0.908 6 C -0.168 4.168 7 N -0.546 5.546 8 Si 0.761 3.239 9 H -0.190 1.190 10 H -0.217 1.217 11 H -0.214 1.214 12 N -0.244 5.244 13 C -0.101 4.101 14 C 0.334 3.666 15 O -0.407 6.407 16 N -0.330 5.330 17 C 0.339 3.661 18 O -0.394 6.394 19 C -0.003 4.003 20 C -0.178 4.178 21 C -0.234 4.234 22 H 0.073 0.927 23 H 0.053 0.947 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.139 0.861 27 H 0.116 0.884 28 H 0.255 0.745 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.126 0.874 34 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.477 -2.556 5.889 7.301 hybrid contribution 0.674 -0.850 -1.346 1.729 sum 4.151 -3.407 4.543 7.034 Atomic orbital electron populations 1.21610 0.97274 0.99245 0.99710 1.19320 0.92499 0.94401 0.83594 0.93787 1.22033 1.35391 1.08951 0.91816 0.90810 1.25400 0.95234 0.95278 1.00937 1.70001 1.40687 1.19774 1.24114 0.85886 0.77885 0.79125 0.80997 1.19007 1.21709 1.21390 1.63316 1.14033 1.05837 1.41232 1.22510 1.04695 0.89935 0.92952 1.21311 0.76937 0.83571 0.84764 1.90723 1.56655 1.23727 1.69624 1.44892 1.35041 1.23841 1.29237 1.21125 0.79879 0.79210 0.85904 1.90693 1.29312 1.65494 1.53889 1.21287 0.90209 0.97636 0.91180 1.21687 1.02609 0.90619 1.02869 1.22793 0.99219 1.01805 0.99573 0.92665 0.94686 0.95159 0.92994 0.86081 0.88357 0.74481 0.90644 0.91049 0.91867 0.92931 0.87400 0.91997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 9.16 71.98 0.66 -4.30 16 2 C 0.21 8.51 1.91 44.17 0.08 8.60 16 3 H 0.04 1.99 5.74 -2.39 -0.01 1.98 16 4 C -0.54 -23.67 4.88 25.60 0.12 -23.54 16 5 H 0.07 3.09 4.26 -2.91 -0.01 3.08 16 6 C 0.03 1.53 5.32 84.66 0.45 1.98 16 7 N -0.91 -45.62 11.72 21.45 0.25 -45.36 16 8 Si 0.93 38.42 29.54 68.60 2.03 40.44 16 9 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 10 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 12 N -0.52 -18.23 4.47 -834.13 -3.73 -21.96 16 13 C 0.03 0.98 4.58 85.51 0.39 1.37 16 14 C 0.54 17.31 7.88 87.69 0.69 18.00 16 15 O -0.53 -19.00 17.90 -2.86 -0.05 -19.06 16 16 N -0.67 -19.26 5.16 -427.72 -2.21 -21.46 16 17 C 0.55 17.42 6.82 87.69 0.60 18.02 16 18 O -0.52 -17.97 16.85 -2.87 -0.05 -18.02 16 19 C 0.09 2.96 0.67 2.73 0.00 2.97 16 20 C -0.12 -3.81 7.82 71.98 0.56 -3.25 16 21 C -0.18 -5.74 6.83 71.98 0.49 -5.25 16 22 H 0.05 2.57 6.47 -2.39 -0.02 2.55 16 23 H 0.03 1.36 6.72 -2.39 -0.02 1.34 16 24 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.26 12.78 8.31 -92.71 -0.77 12.01 16 26 H 0.12 4.06 6.71 -2.39 -0.02 4.05 16 27 H 0.10 3.35 4.46 -2.39 -0.01 3.33 16 28 H 0.41 10.32 8.84 -92.70 -0.82 9.50 16 29 H 0.07 2.22 7.60 -2.39 -0.02 2.20 16 30 H 0.07 2.42 6.45 -2.39 -0.02 2.40 16 31 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.05 1.66 6.14 -2.39 -0.01 1.64 16 33 H 0.11 4.06 5.23 -2.39 -0.01 4.04 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -51.12 264.18 0.63 -50.49 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: 0.33 Total: 20.33 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 4.06 Total: 14.60 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -5.68 Total: -88.79 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.10 Total: -37.08 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.44 kcal Total: -51.12 0.63 -50.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097300766.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.529 kcal (2) G-P(sol) polarization free energy of solvation -51.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds