Wall clock time and date at job start Mon Mar 30 2020 04:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29503 * 119.99501 * 2 1 4 4 O 1.41603 * 120.00307 * 0.02562 * 3 2 1 5 5 C 1.46919 * 120.00405 * 180.02562 * 2 1 3 6 6 N 1.29513 * 119.99670 * 359.97438 * 5 2 1 7 7 O 1.41604 * 119.99782 * 172.32764 * 6 5 2 8 8 C 1.50691 * 120.00235 * 179.97438 * 5 2 1 9 9 H 1.09002 * 115.56261 * 277.30025 * 8 5 2 10 10 C 1.53077 * 117.51602 * 131.59631 * 8 5 2 11 11 H 1.08998 * 117.51692 * 145.04919 * 10 8 5 12 12 C 1.50696 * 117.51043 * 359.97438 * 10 8 5 13 13 H 1.07996 * 120.00215 * 297.05812 * 12 10 8 14 14 C 1.37880 * 119.99655 * 117.05578 * 12 10 8 15 15 N 1.31517 * 120.00146 * 0.02562 * 14 12 10 16 16 Si 1.86797 * 119.99948 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47431 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.47158 * 120.00182 * 16 14 12 19 19 H 1.48507 * 109.47291 * 239.99891 * 16 14 12 20 20 C 1.53004 * 117.50143 * 62.98536 * 8 5 2 21 21 C 1.53005 * 117.49541 * 0.02562 * 20 8 5 22 22 C 1.52998 * 117.50108 * 215.00727 * 20 8 5 23 23 H 1.08995 * 109.46773 * 270.00000 * 1 2 3 24 24 H 1.08998 * 109.47498 * 30.00065 * 1 2 3 25 25 H 1.09004 * 109.46634 * 150.00431 * 1 2 3 26 26 H 0.96697 * 113.99815 * 180.02562 * 4 3 2 27 27 H 0.96696 * 113.99535 * 185.04258 * 7 6 5 28 28 H 0.96997 * 120.00123 * 179.97438 * 15 14 12 29 29 H 1.09000 * 109.46966 * 269.20829 * 21 20 8 30 30 H 1.09004 * 109.47122 * 29.20163 * 21 20 8 31 31 H 1.08996 * 109.46773 * 149.20647 * 21 20 8 32 32 H 1.09003 * 109.47099 * 180.08895 * 22 20 8 33 33 H 1.09001 * 109.46527 * 300.08253 * 22 20 8 34 34 H 1.08997 * 109.47094 * 60.08193 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1545 1.1216 0.0000 4 8 1.4464 2.3479 0.0005 5 6 2.2418 -1.2723 -0.0006 6 7 1.5942 -2.3939 -0.0006 7 8 2.2927 -3.6147 -0.1648 8 6 3.7487 -1.2723 -0.0012 9 1 4.2186 -1.1471 -0.9767 10 6 4.4563 -2.1738 1.0137 11 1 5.3916 -2.6413 0.7058 12 6 3.5929 -2.9933 1.9377 13 1 2.9353 -2.5022 2.6396 14 6 3.6424 -4.3703 1.8869 15 7 4.4436 -4.9684 1.0324 16 14 2.5728 -5.3863 3.0327 17 1 1.7678 -4.4807 3.8913 18 1 1.6641 -6.2443 2.2306 19 1 3.4355 -6.2417 3.8867 20 6 4.4556 -0.6561 1.2078 21 6 3.5784 -0.0876 2.3251 22 6 5.7677 0.0891 0.9548 23 1 -0.3633 0.0000 1.0276 24 1 -0.3634 0.8899 -0.5138 25 1 -0.3633 -0.8901 -0.5138 26 1 2.0148 3.1302 0.0001 27 1 1.7191 -4.3905 -0.2285 28 1 4.4787 -5.9371 0.9969 29 1 3.3811 0.9667 2.1313 30 1 2.6354 -0.6332 2.3598 31 1 4.0937 -0.1914 3.2799 32 1 6.1567 0.4707 1.8989 33 1 6.4934 -0.5932 0.5122 34 1 5.5878 0.9204 0.2732 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103316354.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:53 Heat of formation + Delta-G solvation = 49.381601 kcal Electronic energy + Delta-G solvation = -18227.034566 eV Core-core repulsion = 15358.121561 eV Total energy + Delta-G solvation = -2868.913006 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.50454 -36.71838 -35.25049 -33.93559 -32.23108 -30.90552 -28.21112 -27.69035 -26.78283 -25.26139 -23.11271 -20.34213 -18.28364 -17.89154 -16.47000 -16.34803 -15.26434 -14.91522 -14.58001 -14.36721 -14.14036 -13.59410 -13.28430 -12.86429 -12.38581 -12.26774 -12.25069 -11.84489 -11.52293 -11.41665 -11.06697 -10.93040 -10.76714 -10.51233 -10.12082 -9.81165 -9.69204 -9.22834 -9.03430 -8.84223 -8.40429 -8.10899 -7.74282 -5.97939 -3.90593 1.65891 3.06558 3.26164 3.36591 3.41954 3.52026 4.36518 4.44769 4.89801 5.04588 5.48908 5.52108 5.79541 5.92068 5.98100 6.04147 6.24113 6.28088 6.43127 6.54858 6.61093 6.70684 6.72445 6.90017 6.94074 7.04126 7.15632 7.38098 7.66620 7.66837 7.96678 8.02485 8.51323 8.66012 9.04808 9.65853 11.13155 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.025495 B = 0.009952 C = 0.008432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.989749 B = 2812.947726 C = 3319.756485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.190 3.810 3 N -0.298 5.298 4 O -0.418 6.418 5 C 0.204 3.796 6 N -0.307 5.307 7 O -0.312 6.312 8 C -0.174 4.174 9 H 0.086 0.914 10 C 0.069 3.931 11 H 0.081 0.919 12 C -0.476 4.476 13 H 0.054 0.946 14 C 0.095 3.905 15 N -0.873 5.873 16 Si 0.879 3.121 17 H -0.276 1.276 18 H -0.283 1.283 19 H -0.287 1.287 20 C -0.146 4.146 21 C -0.091 4.091 22 C -0.102 4.102 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.082 0.918 26 H 0.400 0.600 27 H 0.369 0.631 28 H 0.257 0.743 29 H 0.038 0.962 30 H 0.051 0.949 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.377 8.219 -2.135 9.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.001 4.001 3 N -0.046 5.046 4 O -0.325 6.325 5 C 0.014 3.986 6 N -0.047 5.047 7 O -0.221 6.221 8 C -0.195 4.195 9 H 0.104 0.896 10 C 0.050 3.950 11 H 0.099 0.901 12 C -0.513 4.513 13 H 0.072 0.928 14 C -0.109 4.109 15 N -0.510 5.510 16 Si 0.707 3.293 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.213 1.213 20 C -0.147 4.147 21 C -0.148 4.148 22 C -0.159 4.159 23 H 0.098 0.902 24 H 0.091 0.909 25 H 0.101 0.899 26 H 0.248 0.752 27 H 0.213 0.787 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.340 8.059 -2.109 9.393 hybrid contribution -0.654 -0.551 0.481 0.981 sum -4.994 7.508 -1.628 9.163 Atomic orbital electron populations 1.21172 0.91606 1.03657 1.03541 1.22542 0.93901 0.90102 0.93527 1.76890 1.22131 0.91287 1.14242 1.88340 1.35266 1.13457 1.95435 1.20972 0.92805 0.87852 0.97020 1.75534 1.26585 0.93573 1.09005 1.89332 1.29605 1.10608 1.92569 1.21768 0.88853 1.14314 0.94553 0.89610 1.20170 0.96770 0.85208 0.92828 0.90132 1.20477 1.22589 0.90335 1.17947 0.92813 1.24787 0.94447 0.97602 0.94076 1.69968 1.37093 1.08876 1.35055 0.86796 0.80784 0.80435 0.81292 1.20061 1.20937 1.21335 1.21523 0.96132 1.00377 0.96671 1.21092 0.98927 0.98194 0.96564 1.21185 0.95798 0.98923 0.99984 0.90232 0.90855 0.89908 0.75242 0.78740 0.93297 0.94332 0.93024 0.93852 0.93508 0.93349 0.93831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 9.54 36.01 0.34 -1.82 16 2 C 0.19 3.49 6.21 -80.06 -0.50 2.99 16 3 N -0.30 -5.22 9.80 34.95 0.34 -4.87 16 4 O -0.42 -5.96 13.74 -11.47 -0.16 -6.12 16 5 C 0.20 4.29 4.83 -80.06 -0.39 3.91 16 6 N -0.31 -6.58 10.69 34.95 0.37 -6.20 16 7 O -0.31 -7.11 9.46 -11.47 -0.11 -7.22 16 8 C -0.17 -3.89 4.90 -91.73 -0.45 -4.34 16 9 H 0.09 1.93 8.14 -51.93 -0.42 1.51 16 10 C 0.07 1.72 4.87 -91.73 -0.45 1.27 16 11 H 0.08 2.20 7.67 -51.93 -0.40 1.80 16 12 C -0.48 -12.50 5.86 -34.44 -0.20 -12.71 16 13 H 0.05 1.47 6.12 -52.49 -0.32 1.15 16 14 C 0.09 2.48 3.55 -17.82 -0.06 2.42 16 15 N -0.87 -23.81 12.61 55.43 0.70 -23.11 16 16 Si 0.88 20.54 29.54 -169.99 -5.02 15.52 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 C -0.15 -3.09 2.49 -154.50 -0.38 -3.48 16 21 C -0.09 -1.85 7.42 37.16 0.28 -1.58 16 22 C -0.10 -1.87 9.85 37.16 0.37 -1.50 16 23 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 24 H 0.07 1.03 7.35 -51.93 -0.38 0.65 16 25 H 0.08 1.23 7.61 -51.93 -0.40 0.83 16 26 H 0.40 3.77 9.28 45.56 0.42 4.19 16 27 H 0.37 7.16 9.28 45.56 0.42 7.58 16 28 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 29 H 0.04 0.72 7.23 -51.93 -0.38 0.34 16 30 H 0.05 1.14 5.24 -51.93 -0.27 0.87 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.79 8.09 -51.93 -0.42 0.37 16 33 H 0.05 0.88 7.90 -51.93 -0.41 0.47 16 34 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 283.33 15.07 4.27 4.27 Total: -1.00 -29.51 283.33 -4.00 -33.52 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -2.95 Total: 9.06 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: -1.44 Total: -14.83 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: 1.42 Total: -34.19 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: -0.27 Total: -13.34 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.51 -4.00 -33.52 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103316354.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.897 kcal (2) G-P(sol) polarization free energy of solvation -29.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds