Wall clock time and date at job start Mon Mar 30 2020 04:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.08999 * 109.47479 * 2 1 4 4 C 1.50703 * 109.46937 * 120.00459 * 2 1 3 5 5 H 1.07996 * 120.00381 * 119.99917 * 4 2 1 6 6 C 1.37879 * 119.99584 * 299.99497 * 4 2 1 7 7 N 1.31516 * 120.00020 * 180.02562 * 6 4 2 8 8 Si 1.86795 * 120.00347 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47370 * 89.99721 * 8 6 4 10 10 H 1.48499 * 109.47323 * 209.99989 * 8 6 4 11 11 H 1.48503 * 109.46985 * 329.99791 * 8 6 4 12 12 N 1.46507 * 109.47107 * 239.99861 * 2 1 3 13 13 C 1.46500 * 119.99801 * 300.00295 * 12 2 1 14 14 C 1.34779 * 119.99688 * 120.00191 * 12 2 1 15 15 O 1.21282 * 120.00241 * 0.02562 * 14 12 2 16 16 C 1.50699 * 119.99763 * 179.97438 * 14 12 2 17 17 H 1.09010 * 110.85343 * 56.20934 * 16 14 12 18 18 C 1.54479 * 111.00253 * 292.40126 * 16 14 12 19 19 N 1.46768 * 105.47416 * 216.44997 * 18 16 14 20 20 C 1.34658 * 111.33111 * 17.12545 * 19 18 16 21 21 O 1.21283 * 125.07349 * 179.54285 * 20 19 18 22 22 C 1.51282 * 109.98822 * 359.41615 * 20 19 18 23 23 H 1.09005 * 109.46952 * 59.99831 * 1 2 3 24 24 H 1.08999 * 109.47479 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47242 * 300.00170 * 1 2 3 26 26 H 0.97003 * 120.00421 * 180.02562 * 7 6 4 27 27 H 1.09001 * 109.47062 * 269.99525 * 13 12 2 28 28 H 1.09000 * 109.47314 * 30.00141 * 13 12 2 29 29 H 1.09002 * 109.46681 * 150.00231 * 13 12 2 30 30 H 1.09001 * 110.24706 * 335.44815 * 18 16 14 31 31 H 1.09005 * 110.24718 * 97.45125 * 18 16 14 32 32 H 0.96997 * 124.35360 * 197.01923 * 19 18 16 33 33 H 1.09002 * 110.48655 * 225.16301 * 22 20 19 34 34 H 1.08998 * 110.48942 * 102.65244 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 2.1379 -0.8591 3.5566 8 14 0.6248 1.2790 2.6542 9 1 -0.8028 0.8727 2.6998 10 1 0.9759 1.9950 3.9068 11 1 0.8471 2.1765 1.4921 12 7 2.0183 -0.6907 -1.1962 13 6 1.6643 -2.0932 -1.4280 14 6 2.7932 -0.0356 -2.0833 15 8 3.0866 1.1254 -1.8912 16 6 3.2960 -0.7462 -3.3135 17 1 2.4673 -1.1573 -3.8902 18 6 4.3103 -1.8497 -2.9397 19 7 5.3149 -1.8369 -4.0097 20 6 5.2593 -0.6943 -4.7200 21 8 5.9811 -0.4192 -5.6551 22 6 4.1610 0.1961 -4.1822 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.9033 -0.5280 4.4376 27 1 2.4156 -2.7378 -0.9717 28 1 0.6903 -2.3002 -0.9847 29 1 1.6237 -2.2852 -2.5002 30 1 4.7774 -1.6238 -1.9811 31 1 3.8147 -2.8197 -2.8993 32 1 5.9400 -2.5583 -4.1822 33 1 3.5709 0.6102 -4.9997 34 1 4.5822 0.9963 -3.5736 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112733728.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:26 Heat of formation + Delta-G solvation = -88.366333 kcal Electronic energy + Delta-G solvation = -17721.775271 eV Core-core repulsion = 14846.889067 eV Total energy + Delta-G solvation = -2874.886204 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.80003 -40.27719 -37.51032 -37.11651 -34.75328 -32.92037 -31.77276 -28.64921 -27.67455 -27.11081 -24.82240 -22.35722 -21.57028 -19.89338 -18.99184 -18.43761 -18.10135 -17.48573 -16.65593 -16.44482 -15.86926 -15.67469 -14.92586 -14.66330 -14.61677 -14.40596 -14.21733 -14.02307 -13.76048 -13.40233 -13.04346 -12.94145 -12.57736 -12.46156 -12.22764 -12.02202 -11.57046 -11.31893 -11.09686 -10.77799 -10.68492 -10.17974 -9.37450 -8.32894 -6.36572 1.27736 1.38066 1.45351 1.47082 1.66525 2.20857 2.29421 2.37182 3.03247 3.23575 3.36755 3.73679 3.91784 4.12463 4.48359 4.49960 4.55942 4.58644 4.64665 4.66099 4.79778 4.87299 4.96206 5.04328 5.17471 5.36928 5.51927 5.74029 5.74437 5.94448 6.21961 6.66373 6.75173 7.17531 7.23403 7.37308 8.82767 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.041273 B = 0.006231 C = 0.006076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.244090 B = 4492.798082 C = 4606.895226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.229 3.771 3 H 0.030 0.970 4 C -0.521 4.521 5 H 0.051 0.949 6 C 0.023 3.977 7 N -0.940 5.940 8 Si 0.937 3.063 9 H -0.255 1.255 10 H -0.300 1.300 11 H -0.262 1.262 12 N -0.588 5.588 13 C 0.073 3.927 14 C 0.511 3.489 15 O -0.594 6.594 16 C -0.108 4.108 17 H 0.157 0.843 18 C 0.115 3.885 19 N -0.715 5.715 20 C 0.523 3.477 21 O -0.579 6.579 22 C -0.141 4.141 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.038 0.962 26 H 0.267 0.733 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.108 0.892 30 H 0.062 0.938 31 H 0.132 0.868 32 H 0.422 0.578 33 H 0.122 0.878 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.595 -5.388 -13.684 14.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.125 3.875 3 H 0.048 0.952 4 C -0.560 4.560 5 H 0.069 0.931 6 C -0.176 4.176 7 N -0.579 5.579 8 Si 0.765 3.235 9 H -0.180 1.180 10 H -0.228 1.228 11 H -0.187 1.187 12 N -0.318 5.318 13 C -0.068 4.068 14 C 0.299 3.701 15 O -0.475 6.475 16 C -0.130 4.130 17 H 0.175 0.825 18 C -0.010 4.010 19 N -0.371 5.371 20 C 0.310 3.690 21 O -0.460 6.460 22 C -0.181 4.181 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.056 0.944 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.149 0.851 32 H 0.263 0.737 33 H 0.140 0.860 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.181 -4.610 -13.822 14.733 hybrid contribution 0.075 0.477 0.962 1.077 sum -2.106 -4.133 -12.860 13.671 Atomic orbital electron populations 1.22321 0.96614 1.02465 0.99885 1.18977 0.91830 0.93470 0.83194 0.95182 1.21377 1.31496 1.13094 0.89993 0.93074 1.25606 0.97190 0.99251 0.95537 1.69993 1.47220 1.42155 0.98570 0.86042 0.80004 0.80510 0.76960 1.18027 1.22817 1.18700 1.47883 1.48924 1.13598 1.21381 1.22034 1.02013 0.79785 1.02998 1.20716 0.78105 0.86544 0.84772 1.90651 1.59624 1.19507 1.77751 1.22242 1.00264 0.96371 0.94101 0.82545 1.22156 0.88390 1.00592 0.89814 1.46201 1.38164 1.19847 1.32848 1.21083 0.84079 0.82953 0.80896 1.90721 1.47982 1.76821 1.30455 1.22259 0.96252 0.98369 1.01249 0.92367 0.90731 0.94359 0.92401 0.92474 0.90761 0.87382 0.91972 0.85054 0.73713 0.86028 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.85 8.65 71.98 0.62 -5.23 16 2 C 0.23 10.11 2.23 44.24 0.10 10.20 16 3 H 0.03 1.54 5.96 -2.39 -0.01 1.53 16 4 C -0.52 -27.41 8.95 25.60 0.23 -27.18 16 5 H 0.05 2.90 7.89 -2.91 -0.02 2.88 16 6 C 0.02 1.26 5.45 84.65 0.46 1.73 16 7 N -0.94 -55.87 13.96 21.45 0.30 -55.58 16 8 Si 0.94 43.61 24.37 68.60 1.67 45.28 16 9 H -0.25 -10.87 6.87 99.48 0.68 -10.18 16 10 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 11 H -0.26 -12.05 6.53 99.48 0.65 -11.40 16 12 N -0.59 -20.15 2.75 -826.78 -2.28 -22.42 16 13 C 0.07 1.72 8.41 127.77 1.07 2.80 16 14 C 0.51 16.92 6.95 87.66 0.61 17.53 16 15 O -0.59 -25.63 14.84 -3.04 -0.05 -25.67 16 16 C -0.11 -2.27 2.55 -10.48 -0.03 -2.30 16 17 H 0.16 2.00 7.25 -2.38 -0.02 1.98 16 18 C 0.11 2.04 6.43 86.83 0.56 2.60 16 19 N -0.72 -13.45 6.25 -459.47 -2.87 -16.32 16 20 C 0.52 13.48 8.45 87.86 0.74 14.22 16 21 O -0.58 -19.60 18.03 -3.04 -0.05 -19.65 16 22 C -0.14 -3.40 6.21 30.59 0.19 -3.21 16 23 H 0.06 1.91 8.14 -2.38 -0.02 1.89 16 24 H 0.07 2.52 6.66 -2.39 -0.02 2.51 16 25 H 0.04 1.54 3.27 -2.39 -0.01 1.53 16 26 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 27 H 0.06 1.35 8.10 -2.39 -0.02 1.34 16 28 H 0.07 1.80 6.43 -2.39 -0.02 1.79 16 29 H 0.11 1.41 6.10 -2.39 -0.01 1.39 16 30 H 0.06 1.42 7.88 -2.39 -0.02 1.40 16 31 H 0.13 1.34 7.47 -2.38 -0.02 1.32 16 32 H 0.42 6.20 8.96 -92.71 -0.83 5.37 16 33 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.10 2.96 6.97 -2.39 -0.02 2.95 16 Total: -1.00 -75.19 272.51 1.50 -73.68 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.22 Total: 9.52 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: 4.56 Total: 11.15 kcal Atomic # 7 Polarization: -89.47 SS G_CDS: -4.85 Total: -94.32 kcal Atomic # 8 Polarization: -45.23 SS G_CDS: -0.10 Total: -45.33 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.67 Total: 45.28 kcal Total: -75.19 1.50 -73.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112733728.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.682 kcal (2) G-P(sol) polarization free energy of solvation -75.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds