Wall clock time and date at job start Mon Mar 30 2020 03:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47297 * 2 1 4 4 H 1.09010 * 109.46912 * 306.17831 * 3 2 1 5 5 C 1.50694 * 109.47328 * 186.17763 * 3 2 1 6 6 H 1.08005 * 119.99590 * 244.73061 * 5 3 2 7 7 C 1.37875 * 120.00348 * 64.73356 * 5 3 2 8 8 N 1.31513 * 119.99971 * 195.28268 * 7 5 3 9 9 Si 1.86798 * 120.00009 * 15.27814 * 7 5 3 10 10 H 1.48497 * 109.47011 * 92.20568 * 9 7 5 11 11 H 1.48500 * 109.47278 * 212.21081 * 9 7 5 12 12 H 1.48504 * 109.46946 * 332.20937 * 9 7 5 13 13 N 1.46902 * 109.46945 * 66.17044 * 3 2 1 14 14 C 1.46895 * 110.99983 * 202.81793 * 13 3 2 15 15 H 1.08995 * 110.54470 * 324.50635 * 14 13 3 16 16 C 1.54239 * 110.60491 * 201.48998 * 14 13 3 17 17 C 1.51319 * 103.55247 * 241.48275 * 16 14 13 18 18 O 1.21229 * 125.38923 * 179.97438 * 17 16 14 19 19 N 1.33877 * 109.20888 * 0.02562 * 17 16 14 20 20 C 1.46495 * 122.75963 * 179.97438 * 19 17 16 21 21 C 1.33882 * 114.47501 * 359.97438 * 19 17 16 22 22 O 1.21221 * 125.39496 * 180.02562 * 21 19 17 23 23 H 1.09002 * 109.47511 * 53.85309 * 1 2 3 24 24 H 1.09005 * 109.47351 * 173.85226 * 1 2 3 25 25 H 1.08995 * 109.47157 * 293.85817 * 1 2 3 26 26 H 1.08994 * 109.46924 * 120.00139 * 2 1 3 27 27 H 1.09003 * 109.46772 * 240.00368 * 2 1 3 28 28 H 0.97004 * 119.99746 * 179.97438 * 8 7 5 29 29 H 1.00900 * 111.00584 * 326.77993 * 13 3 2 30 30 H 1.08998 * 110.60364 * 359.97438 * 16 14 13 31 31 H 1.09002 * 110.60385 * 122.96592 * 16 14 13 32 32 H 1.09000 * 109.47351 * 269.99486 * 20 19 17 33 33 H 1.08999 * 109.47427 * 29.99865 * 20 19 17 34 34 H 1.09008 * 109.47045 * 150.00035 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5892 1.9872 -0.8296 5 6 3.5392 1.4452 -0.1529 6 1 4.1629 1.8149 0.6476 7 6 4.1146 0.9759 -1.3146 8 7 5.3989 0.6944 -1.3452 9 14 3.0700 0.7398 -2.8451 10 1 3.1150 1.9735 -3.6703 11 1 3.5980 -0.4027 -3.6334 12 1 1.6665 0.4607 -2.4482 13 7 1.6757 2.0906 1.2670 14 6 1.6443 3.5519 1.1207 15 1 2.4225 3.8844 0.4338 16 6 1.7977 4.2383 2.4934 17 6 0.5069 5.0123 2.6491 18 8 0.2122 5.7016 3.6018 19 7 -0.2585 4.8144 1.5687 20 6 -1.5794 5.4276 1.4099 21 6 0.2827 4.0100 0.6454 22 8 -0.2358 3.6983 -0.4050 23 1 -0.3634 0.6062 -0.8298 24 1 -0.3634 -1.0218 -0.1101 25 1 -0.3633 0.4156 0.9398 26 1 1.8933 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 5.8037 0.3639 -2.1624 29 1 0.7932 1.7425 1.6107 30 1 1.8970 3.4953 3.2848 31 1 2.6527 4.9145 2.4907 32 1 -2.3394 4.7662 1.8257 33 1 -1.6022 6.3826 1.9348 34 1 -1.7795 5.5903 0.3507 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114650636.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:04 Heat of formation + Delta-G solvation = -58.496044 kcal Electronic energy + Delta-G solvation = -17929.485195 eV Core-core repulsion = 15055.894263 eV Total energy + Delta-G solvation = -2873.590931 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.75717 -38.55356 -36.65287 -35.68017 -33.49730 -32.03171 -30.09210 -27.27112 -26.75405 -24.92882 -22.65837 -21.68098 -19.97001 -19.50885 -17.20642 -16.90561 -16.78903 -16.36028 -15.07571 -14.86059 -14.51507 -14.10677 -14.07774 -13.47726 -13.38622 -12.88880 -12.67337 -12.62069 -12.50136 -12.03455 -11.72301 -11.35159 -10.91592 -10.77322 -10.65027 -10.37036 -10.05471 -9.93961 -9.75705 -9.56395 -9.27415 -8.55076 -7.70234 -6.12778 -4.06962 1.58613 2.60737 2.78169 3.27182 3.37097 3.42689 4.25614 4.36434 4.40245 4.58102 4.95378 5.10729 5.16888 5.20035 5.42813 5.46350 5.55117 5.77684 5.84313 5.90544 5.99154 6.05114 6.50286 6.62358 6.65737 6.83732 6.87228 7.10061 7.36799 7.64782 7.66797 7.84311 7.94263 8.59328 9.00874 9.53128 10.99725 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.030554 B = 0.007752 C = 0.007237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.182325 B = 3611.237658 C = 3867.848325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.127 4.127 3 C 0.186 3.814 4 H 0.015 0.985 5 C -0.510 4.510 6 H 0.082 0.918 7 C 0.077 3.923 8 N -0.890 5.890 9 Si 0.855 3.145 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.252 1.252 13 N -0.639 5.639 14 C 0.066 3.934 15 H 0.140 0.860 16 C -0.148 4.148 17 C 0.528 3.472 18 O -0.496 6.496 19 N -0.579 5.579 20 C 0.066 3.934 21 C 0.490 3.510 22 O -0.476 6.476 23 H 0.048 0.952 24 H 0.044 0.956 25 H 0.041 0.959 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.263 0.737 29 H 0.325 0.675 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.638 5.957 4.999 13.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.165 4.165 3 C 0.078 3.922 4 H 0.032 0.968 5 C -0.548 4.548 6 H 0.100 0.900 7 C -0.126 4.126 8 N -0.527 5.527 9 Si 0.682 3.318 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.176 1.176 13 N -0.270 5.270 14 C -0.048 4.048 15 H 0.157 0.843 16 C -0.188 4.188 17 C 0.319 3.681 18 O -0.368 6.368 19 N -0.324 5.324 20 C -0.076 4.076 21 C 0.277 3.723 22 O -0.345 6.345 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.143 0.857 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.086 0.914 33 H 0.102 0.898 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.302 6.052 5.036 12.966 hybrid contribution -1.445 -0.011 -1.520 2.098 sum -11.748 6.040 3.516 13.669 Atomic orbital electron populations 1.21921 0.98492 1.00490 1.00486 1.22076 0.92506 0.99648 1.02259 1.19749 0.97137 0.90047 0.85279 0.96758 1.20909 0.88783 1.42604 1.02506 0.89975 1.24867 0.94705 0.94488 0.98559 1.69964 1.11494 1.43519 1.27716 0.87314 0.82346 0.77997 0.84117 1.20670 1.21373 1.17634 1.60888 1.34468 0.99108 1.32556 1.22516 0.93219 0.92373 0.96742 0.84271 1.22651 0.95535 1.00671 0.99979 1.21133 0.86555 0.79927 0.80524 1.90730 1.76384 1.38209 1.31523 1.46880 1.19399 1.45102 1.21059 1.21871 0.82698 0.99178 1.03839 1.22709 0.90072 0.76778 0.82728 1.90744 1.67763 1.54243 1.21741 0.93261 0.93672 0.93956 0.91727 0.91811 0.92660 0.85701 0.85174 0.85946 0.91355 0.89784 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.72 9.63 37.16 0.36 -2.36 16 2 C -0.13 -2.61 4.78 -26.73 -0.13 -2.74 16 3 C 0.19 4.08 1.44 -68.87 -0.10 3.98 16 4 H 0.01 0.35 5.78 -51.92 -0.30 0.05 16 5 C -0.51 -13.36 8.84 -34.44 -0.30 -13.67 16 6 H 0.08 2.34 8.06 -52.48 -0.42 1.92 16 7 C 0.08 2.10 5.33 -17.82 -0.09 2.01 16 8 N -0.89 -26.12 13.96 55.43 0.77 -25.35 16 9 Si 0.86 20.74 25.78 -169.99 -4.38 16.36 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.25 -5.84 5.50 56.52 0.31 -5.52 16 13 N -0.64 -11.58 6.02 -101.17 -0.61 -12.19 16 14 C 0.07 1.04 3.18 -67.92 -0.22 0.83 16 15 H 0.14 2.39 7.64 -51.93 -0.40 1.99 16 16 C -0.15 -1.85 6.82 -26.93 -0.18 -2.04 16 17 C 0.53 7.17 8.08 -11.08 -0.09 7.08 16 18 O -0.50 -7.76 17.48 5.60 0.10 -7.66 16 19 N -0.58 -7.85 2.95 -122.73 -0.36 -8.21 16 20 C 0.07 0.72 10.58 59.84 0.63 1.35 16 21 C 0.49 7.81 7.38 -11.08 -0.08 7.73 16 22 O -0.48 -9.03 16.76 5.61 0.09 -8.94 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.04 0.66 6.69 -51.93 -0.35 0.31 16 26 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.06 1.41 4.99 -51.93 -0.26 1.15 16 28 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.32 5.37 6.41 -39.29 -0.25 5.11 16 30 H 0.13 1.55 7.97 -51.93 -0.41 1.14 16 31 H 0.12 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.83 7.83 -51.93 -0.41 0.42 16 34 H 0.08 0.89 7.83 -51.92 -0.41 0.49 16 LS Contribution 280.93 15.07 4.23 4.23 Total: -1.00 -30.92 280.93 -4.90 -35.83 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -4.54 Total: 3.76 kcal Atomic # 6 Polarization: 2.37 SS G_CDS: -0.21 Total: 2.17 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: -0.20 Total: -45.75 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: 0.19 Total: -16.60 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.38 Total: 16.36 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.92 -4.90 -35.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114650636.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.667 kcal (2) G-P(sol) polarization free energy of solvation -30.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds