Wall clock time and date at job start Mon Mar 30 2020 03:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47297 * 2 1 4 4 H 1.09010 * 109.46912 * 306.17831 * 3 2 1 5 5 C 1.50694 * 109.47328 * 186.17763 * 3 2 1 6 6 H 1.08005 * 119.99590 * 244.73061 * 5 3 2 7 7 C 1.37875 * 120.00348 * 64.73356 * 5 3 2 8 8 N 1.31513 * 119.99971 * 195.28268 * 7 5 3 9 9 Si 1.86798 * 120.00009 * 15.27814 * 7 5 3 10 10 H 1.48497 * 109.47011 * 92.20568 * 9 7 5 11 11 H 1.48500 * 109.47278 * 212.21081 * 9 7 5 12 12 H 1.48504 * 109.46946 * 332.20937 * 9 7 5 13 13 N 1.46902 * 109.46945 * 66.17044 * 3 2 1 14 14 C 1.46895 * 110.99983 * 202.81793 * 13 3 2 15 15 H 1.08995 * 110.54470 * 324.50635 * 14 13 3 16 16 C 1.54239 * 110.60491 * 201.48998 * 14 13 3 17 17 C 1.51319 * 103.55247 * 241.48275 * 16 14 13 18 18 O 1.21229 * 125.38923 * 179.97438 * 17 16 14 19 19 N 1.33877 * 109.20888 * 0.02562 * 17 16 14 20 20 C 1.46495 * 122.75963 * 179.97438 * 19 17 16 21 21 C 1.33882 * 114.47501 * 359.97438 * 19 17 16 22 22 O 1.21221 * 125.39496 * 180.02562 * 21 19 17 23 23 H 1.09002 * 109.47511 * 53.85309 * 1 2 3 24 24 H 1.09005 * 109.47351 * 173.85226 * 1 2 3 25 25 H 1.08995 * 109.47157 * 293.85817 * 1 2 3 26 26 H 1.08994 * 109.46924 * 120.00139 * 2 1 3 27 27 H 1.09003 * 109.46772 * 240.00368 * 2 1 3 28 28 H 0.97004 * 119.99746 * 179.97438 * 8 7 5 29 29 H 1.00900 * 111.00584 * 326.77993 * 13 3 2 30 30 H 1.08998 * 110.60364 * 359.97438 * 16 14 13 31 31 H 1.09002 * 110.60385 * 122.96592 * 16 14 13 32 32 H 1.09000 * 109.47351 * 269.99486 * 20 19 17 33 33 H 1.08999 * 109.47427 * 29.99865 * 20 19 17 34 34 H 1.09008 * 109.47045 * 150.00035 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5892 1.9872 -0.8296 5 6 3.5392 1.4452 -0.1529 6 1 4.1629 1.8149 0.6476 7 6 4.1146 0.9759 -1.3146 8 7 5.3989 0.6944 -1.3452 9 14 3.0700 0.7398 -2.8451 10 1 3.1150 1.9735 -3.6703 11 1 3.5980 -0.4027 -3.6334 12 1 1.6665 0.4607 -2.4482 13 7 1.6757 2.0906 1.2670 14 6 1.6443 3.5519 1.1207 15 1 2.4225 3.8844 0.4338 16 6 1.7977 4.2383 2.4934 17 6 0.5069 5.0123 2.6491 18 8 0.2122 5.7016 3.6018 19 7 -0.2585 4.8144 1.5687 20 6 -1.5794 5.4276 1.4099 21 6 0.2827 4.0100 0.6454 22 8 -0.2358 3.6983 -0.4050 23 1 -0.3634 0.6062 -0.8298 24 1 -0.3634 -1.0218 -0.1101 25 1 -0.3633 0.4156 0.9398 26 1 1.8933 -0.5138 0.8899 27 1 1.8933 -0.5138 -0.8901 28 1 5.8037 0.3639 -2.1624 29 1 0.7932 1.7425 1.6107 30 1 1.8970 3.4953 3.2848 31 1 2.6527 4.9145 2.4907 32 1 -2.3394 4.7662 1.8257 33 1 -1.6022 6.3826 1.9348 34 1 -1.7795 5.5903 0.3507 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000114650636.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:04 Heat of formation + Delta-G solvation = -81.710374 kcal Electronic energy + Delta-G solvation = -17930.491843 eV Core-core repulsion = 15055.894263 eV Total energy + Delta-G solvation = -2874.597580 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.95516 -39.81799 -38.21526 -36.93059 -34.94465 -33.93829 -31.41506 -28.97871 -27.84219 -26.26189 -24.32992 -22.92242 -21.67003 -20.71183 -18.81961 -18.37087 -18.08159 -17.63287 -16.70141 -16.30379 -15.85949 -15.73965 -15.29343 -14.85779 -14.70596 -14.49661 -14.10872 -13.87417 -13.59481 -13.51190 -13.26830 -12.73077 -12.54165 -12.43059 -12.18415 -12.10464 -11.67991 -11.31817 -11.28096 -11.05980 -10.88156 -10.62722 -9.26981 -8.25850 -6.21755 0.37269 1.32625 1.39976 1.47909 1.50125 1.61366 2.36907 3.02563 3.11390 3.13554 3.35212 3.70125 4.22205 4.25669 4.33210 4.36708 4.38898 4.44499 4.49390 4.68447 4.76745 4.85041 4.95589 5.06716 5.14470 5.27184 5.45917 5.69886 5.78600 5.93987 6.18910 6.29955 6.67148 6.72741 6.86139 7.41373 8.90256 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.030554 B = 0.007752 C = 0.007237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.182325 B = 3611.237658 C = 3867.848325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C 0.193 3.807 4 H 0.002 0.998 5 C -0.502 4.502 6 H 0.050 0.950 7 C 0.026 3.974 8 N -0.937 5.937 9 Si 0.910 3.090 10 H -0.284 1.284 11 H -0.288 1.288 12 H -0.234 1.234 13 N -0.640 5.640 14 C 0.061 3.939 15 H 0.123 0.877 16 C -0.135 4.135 17 C 0.538 3.462 18 O -0.511 6.511 19 N -0.575 5.575 20 C 0.060 3.940 21 C 0.499 3.501 22 O -0.507 6.507 23 H 0.037 0.963 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.046 0.954 28 H 0.264 0.736 29 H 0.337 0.663 30 H 0.142 0.858 31 H 0.144 0.856 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.614 6.239 5.709 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C 0.084 3.916 4 H 0.020 0.980 5 C -0.540 4.540 6 H 0.068 0.932 7 C -0.173 4.173 8 N -0.577 5.577 9 Si 0.735 3.265 10 H -0.211 1.211 11 H -0.214 1.214 12 H -0.157 1.157 13 N -0.272 5.272 14 C -0.053 4.053 15 H 0.140 0.860 16 C -0.174 4.174 17 C 0.329 3.671 18 O -0.385 6.385 19 N -0.319 5.319 20 C -0.081 4.081 21 C 0.286 3.714 22 O -0.379 6.379 23 H 0.056 0.944 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.157 0.843 30 H 0.160 0.840 31 H 0.162 0.838 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.317 6.354 5.780 15.016 hybrid contribution -0.818 -0.023 -1.638 1.831 sum -13.134 6.331 4.142 15.157 Atomic orbital electron populations 1.21820 0.95565 1.01953 1.01110 1.21980 0.95097 0.98050 1.01490 1.19490 0.94145 0.91373 0.86612 0.98044 1.21162 0.91013 1.40704 1.01136 0.93220 1.25535 0.95541 0.94838 1.01352 1.70082 1.13331 1.45816 1.28479 0.86433 0.81837 0.77544 0.80660 1.21071 1.21364 1.15732 1.60703 1.35499 1.00407 1.30557 1.22521 0.93064 0.91238 0.98516 0.85965 1.22623 0.95967 1.00852 0.97995 1.21130 0.86493 0.79410 0.80040 1.90740 1.76678 1.38990 1.32076 1.46820 1.20283 1.44398 1.20356 1.22099 0.81561 0.99968 1.04433 1.22484 0.89794 0.76679 0.82426 1.90732 1.68445 1.55625 1.23076 0.94351 0.91419 0.92007 0.91652 0.93546 0.92730 0.84283 0.84000 0.83793 0.89932 0.88495 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.68 9.63 71.98 0.69 -3.99 16 2 C -0.13 -5.06 4.78 30.59 0.15 -4.92 16 3 C 0.19 8.31 1.44 44.17 0.06 8.37 16 4 H 0.00 0.09 5.78 -2.38 -0.01 0.08 16 5 C -0.50 -26.63 8.84 25.60 0.23 -26.40 16 6 H 0.05 2.91 8.06 -2.91 -0.02 2.88 16 7 C 0.03 1.43 5.33 84.65 0.45 1.88 16 8 N -0.94 -56.38 13.96 21.45 0.30 -56.08 16 9 Si 0.91 43.11 25.78 68.60 1.77 44.88 16 10 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.23 -10.32 5.50 99.48 0.55 -9.77 16 13 N -0.64 -22.28 6.02 -474.00 -2.85 -25.13 16 14 C 0.06 1.85 3.18 44.78 0.14 1.99 16 15 H 0.12 4.18 7.64 -2.39 -0.02 4.16 16 16 C -0.13 -3.06 6.82 30.46 0.21 -2.85 16 17 C 0.54 13.20 8.08 87.99 0.71 13.91 16 18 O -0.51 -14.62 17.48 -2.87 -0.05 -14.67 16 19 N -0.57 -14.23 2.95 -780.02 -2.30 -16.54 16 20 C 0.06 1.16 10.58 127.77 1.35 2.51 16 21 C 0.50 15.05 7.38 87.99 0.65 15.70 16 22 O -0.51 -18.57 16.76 -2.85 -0.05 -18.62 16 23 H 0.04 1.30 8.14 -2.39 -0.02 1.29 16 24 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 25 H 0.06 1.71 6.69 -2.39 -0.02 1.69 16 26 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.05 1.98 4.99 -2.39 -0.01 1.97 16 28 H 0.26 15.02 8.31 -92.71 -0.77 14.24 16 29 H 0.34 10.34 6.41 -89.69 -0.57 9.77 16 30 H 0.14 2.98 7.97 -2.39 -0.02 2.97 16 31 H 0.14 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.10 1.65 7.83 -2.39 -0.02 1.63 16 34 H 0.09 1.66 7.83 -2.38 -0.02 1.64 16 Total: -1.00 -66.47 280.93 1.83 -64.64 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.38 Total: 15.32 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 4.64 Total: 6.21 kcal Atomic # 7 Polarization: -92.89 SS G_CDS: -4.86 Total: -97.75 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.10 Total: -33.29 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 1.77 Total: 44.88 kcal Total: -66.47 1.83 -64.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114650636.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.074 kcal (2) G-P(sol) polarization free energy of solvation -66.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds