Wall clock time and date at job start Mon Mar 30 2020 04:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47216 * 2 1 4 4 N 1.46505 * 109.47154 * 119.99954 * 2 1 3 5 5 C 1.34779 * 119.99827 * 274.99957 * 4 2 1 6 6 O 1.21684 * 119.99803 * 0.02562 * 5 4 2 7 7 C 1.46369 * 119.99797 * 179.97438 * 5 4 2 8 8 H 1.08001 * 120.00394 * 353.93819 * 7 5 4 9 9 C 1.40046 * 119.99872 * 173.93710 * 7 5 4 10 10 N 1.30674 * 120.00161 * 6.15619 * 9 7 5 11 11 Si 1.86798 * 120.00142 * 186.15134 * 9 7 5 12 12 H 1.48494 * 109.47377 * 94.98361 * 11 9 7 13 13 H 1.48498 * 109.47416 * 214.98768 * 11 9 7 14 14 H 1.48507 * 109.47217 * 334.98533 * 11 9 7 15 15 C 1.50700 * 109.47039 * 239.99652 * 2 1 3 16 16 O 1.21278 * 120.00179 * 240.00008 * 15 2 1 17 17 N 1.34781 * 120.00019 * 60.00276 * 15 2 1 18 18 C 1.47016 * 125.64887 * 180.02562 * 17 15 2 19 19 C 1.54327 * 107.40225 * 180.94500 * 18 17 15 20 20 C 1.55552 * 102.75902 * 22.23701 * 19 18 17 21 21 C 1.47424 * 125.64394 * 359.95532 * 17 15 2 22 22 H 1.09001 * 109.47055 * 300.00386 * 1 2 3 23 23 H 1.08999 * 109.47387 * 60.00316 * 1 2 3 24 24 H 1.09006 * 109.47535 * 179.97438 * 1 2 3 25 25 H 0.97002 * 119.99762 * 94.99571 * 4 2 1 26 26 H 0.96995 * 120.00243 * 179.97438 * 10 9 7 27 27 H 1.09002 * 109.88101 * 300.43412 * 18 17 15 28 28 H 1.08994 * 109.88568 * 61.44480 * 18 17 15 29 29 H 1.08996 * 110.72101 * 140.62824 * 19 18 17 30 30 H 1.08999 * 110.71925 * 263.90716 * 19 18 17 31 31 H 1.09001 * 110.96680 * 206.40028 * 20 19 18 32 32 H 1.09000 * 111.02311 * 82.56169 * 20 19 18 33 33 H 1.09001 * 110.36862 * 274.74645 * 21 17 15 34 34 H 1.08997 * 110.37125 * 36.96308 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8572 1.1623 2.4119 7 6 2.6344 -0.7083 3.5524 8 1 2.7977 -1.7757 3.5309 9 6 2.8891 0.0155 4.7240 10 7 2.5790 1.2832 4.7892 11 14 3.6719 -0.8313 6.1935 12 1 5.1410 -0.6171 6.1636 13 1 3.1142 -0.2634 7.4471 14 1 3.3827 -2.2869 6.1381 15 6 2.0323 -0.7105 -1.2304 16 8 2.7295 -1.6965 -1.1191 17 7 1.7067 -0.2501 -2.4546 18 6 2.1257 -0.8436 -3.7327 19 6 1.5384 0.0294 -4.8616 20 6 1.2944 1.3914 -4.1510 21 6 0.8702 0.9314 -2.7336 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 2.2490 -1.6318 1.1526 26 1 2.7550 1.7844 5.6008 27 1 3.2137 -0.8520 -3.7985 28 1 1.7419 -1.8606 -3.8126 29 1 2.2545 0.1399 -5.6759 30 1 0.6007 -0.3904 -5.2256 31 1 0.4927 1.9471 -4.6375 32 1 2.2097 1.9821 -4.1128 33 1 -0.1854 0.6600 -2.7227 34 1 1.0669 1.7165 -2.0036 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127520267.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:10 Heat of formation + Delta-G solvation = -74.938940 kcal Electronic energy + Delta-G solvation = -17382.449692 eV Core-core repulsion = 14508.145743 eV Total energy + Delta-G solvation = -2874.303949 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.05313 -37.69200 -36.76368 -33.80175 -32.36048 -31.66470 -29.78420 -28.72171 -26.10202 -24.74030 -22.45711 -21.34855 -19.81044 -18.95098 -17.71316 -16.60787 -16.18447 -15.49825 -15.12705 -14.65547 -13.92537 -13.80012 -13.66319 -13.50695 -13.00309 -12.75514 -12.32643 -12.18852 -11.82289 -11.71680 -11.48669 -11.24006 -11.14168 -11.03550 -10.86675 -10.78754 -10.41958 -10.18840 -9.42168 -8.82645 -8.59328 -7.62712 -7.54802 -6.17991 -4.60620 2.89327 3.03778 3.17492 3.24627 3.28923 4.14080 4.33014 4.41727 4.59207 4.71556 4.89066 4.98734 5.11945 5.19639 5.48571 5.52382 5.58717 5.63098 5.72332 5.74238 5.80623 5.96460 5.99499 6.05405 6.30260 6.40509 6.68615 7.47250 7.54906 7.98576 8.07454 8.36587 8.40586 9.05425 9.55594 10.60714 10.78629 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.052198 B = 0.005197 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.295156 B = 5386.330565 C = 5664.570806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.142 3.858 3 H 0.100 0.900 4 N -0.749 5.749 5 C 0.558 3.442 6 O -0.583 6.583 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.088 3.912 10 N -0.769 5.769 11 Si 0.909 3.091 12 H -0.273 1.273 13 H -0.279 1.279 14 H -0.264 1.264 15 C 0.528 3.472 16 O -0.535 6.535 17 N -0.622 5.622 18 C 0.106 3.894 19 C -0.131 4.131 20 C -0.135 4.135 21 C 0.096 3.904 22 H 0.075 0.925 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.390 0.610 26 H 0.268 0.732 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.973 -0.705 -16.383 16.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.032 3.968 3 H 0.118 0.882 4 N -0.406 5.406 5 C 0.363 3.637 6 O -0.466 6.466 7 C -0.579 4.579 8 H 0.088 0.912 9 C -0.131 4.131 10 N -0.397 5.397 11 Si 0.733 3.267 12 H -0.198 1.198 13 H -0.205 1.205 14 H -0.188 1.188 15 C 0.317 3.683 16 O -0.411 6.411 17 N -0.359 5.359 18 C -0.017 4.017 19 C -0.169 4.169 20 C -0.173 4.173 21 C -0.027 4.027 22 H 0.094 0.906 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.224 0.776 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.783 -0.237 -16.062 16.504 hybrid contribution 0.498 -0.831 0.591 1.135 sum -3.285 -1.068 -15.472 15.853 Atomic orbital electron populations 1.22261 0.94789 1.02028 1.02759 1.20264 0.94451 0.97866 0.84198 0.88248 1.46054 1.72945 1.13667 1.07950 1.18234 0.77636 0.86357 0.81511 1.90579 1.54792 1.16516 1.84706 1.20874 1.46953 0.95247 0.94814 0.91237 1.25695 0.93697 0.94541 0.99193 1.70025 1.35158 1.07839 1.26707 0.86341 0.79624 0.80273 0.80430 1.19797 1.20470 1.18825 1.20997 0.79428 0.84352 0.83566 1.90656 1.37891 1.26592 1.85976 1.48498 1.52219 1.29948 1.05205 1.21869 0.99852 0.97194 0.82760 1.22709 1.01652 0.95398 0.97174 1.22881 1.02469 0.97060 0.94871 1.22491 0.95006 0.88065 0.97168 0.90561 0.92322 0.92856 0.77593 0.92151 0.91632 0.91674 0.90104 0.90603 0.89781 0.90444 0.90914 0.89863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.29 37.16 0.35 -2.40 16 2 C 0.14 2.87 2.33 -69.08 -0.16 2.71 16 3 H 0.10 2.13 7.28 -51.93 -0.38 1.76 16 4 N -0.75 -18.20 4.95 -56.35 -0.28 -18.48 16 5 C 0.56 16.28 7.71 -12.99 -0.10 16.18 16 6 O -0.58 -18.70 14.71 5.20 0.08 -18.63 16 7 C -0.54 -15.81 9.53 -35.63 -0.34 -16.15 16 8 H 0.07 1.90 7.85 -52.49 -0.41 1.48 16 9 C 0.09 2.51 5.49 -17.37 -0.10 2.41 16 10 N -0.77 -23.20 11.85 55.55 0.66 -22.54 16 11 Si 0.91 20.61 29.56 -169.99 -5.03 15.59 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 14 H -0.26 -5.82 7.11 56.52 0.40 -5.42 16 15 C 0.53 9.78 7.28 -10.98 -0.08 9.70 16 16 O -0.54 -11.60 16.16 5.56 0.09 -11.51 16 17 N -0.62 -8.79 3.32 -170.51 -0.57 -9.36 16 18 C 0.11 1.22 6.86 -3.07 -0.02 1.20 16 19 C -0.13 -1.01 6.98 -24.68 -0.17 -1.18 16 20 C -0.13 -1.06 7.10 -24.35 -0.17 -1.23 16 21 C 0.10 1.01 5.14 -2.52 -0.01 1.00 16 22 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 23 H 0.06 0.79 4.99 -51.93 -0.26 0.53 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.39 9.18 7.77 -40.82 -0.32 8.86 16 26 H 0.27 7.31 8.29 -40.82 -0.34 6.98 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.68 7.07 -51.93 -0.37 0.31 16 34 H 0.08 0.93 7.35 -51.93 -0.38 0.54 16 LS Contribution 285.34 15.07 4.30 4.30 Total: -1.00 -35.88 285.34 -6.19 -42.06 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.63 Total: 6.32 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: -0.81 Total: 12.24 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.19 Total: -50.37 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: 0.17 Total: -30.14 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -35.88 -6.19 -42.06 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127520267.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.874 kcal (2) G-P(sol) polarization free energy of solvation -35.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds