Wall clock time and date at job start Mon Mar 30 2020 04:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47216 * 2 1 4 4 N 1.46505 * 109.47154 * 119.99954 * 2 1 3 5 5 C 1.34779 * 119.99827 * 274.99957 * 4 2 1 6 6 O 1.21684 * 119.99803 * 0.02562 * 5 4 2 7 7 C 1.46369 * 119.99797 * 179.97438 * 5 4 2 8 8 H 1.08001 * 120.00394 * 353.93819 * 7 5 4 9 9 C 1.40046 * 119.99872 * 173.93710 * 7 5 4 10 10 N 1.30674 * 120.00161 * 6.15619 * 9 7 5 11 11 Si 1.86798 * 120.00142 * 186.15134 * 9 7 5 12 12 H 1.48494 * 109.47377 * 94.98361 * 11 9 7 13 13 H 1.48498 * 109.47416 * 214.98768 * 11 9 7 14 14 H 1.48507 * 109.47217 * 334.98533 * 11 9 7 15 15 C 1.50700 * 109.47039 * 239.99652 * 2 1 3 16 16 O 1.21278 * 120.00179 * 240.00008 * 15 2 1 17 17 N 1.34781 * 120.00019 * 60.00276 * 15 2 1 18 18 C 1.47016 * 125.64887 * 180.02562 * 17 15 2 19 19 C 1.54327 * 107.40225 * 180.94500 * 18 17 15 20 20 C 1.55552 * 102.75902 * 22.23701 * 19 18 17 21 21 C 1.47424 * 125.64394 * 359.95532 * 17 15 2 22 22 H 1.09001 * 109.47055 * 300.00386 * 1 2 3 23 23 H 1.08999 * 109.47387 * 60.00316 * 1 2 3 24 24 H 1.09006 * 109.47535 * 179.97438 * 1 2 3 25 25 H 0.97002 * 119.99762 * 94.99571 * 4 2 1 26 26 H 0.96995 * 120.00243 * 179.97438 * 10 9 7 27 27 H 1.09002 * 109.88101 * 300.43412 * 18 17 15 28 28 H 1.08994 * 109.88568 * 61.44480 * 18 17 15 29 29 H 1.08996 * 110.72101 * 140.62824 * 19 18 17 30 30 H 1.08999 * 110.71925 * 263.90716 * 19 18 17 31 31 H 1.09001 * 110.96680 * 206.40028 * 20 19 18 32 32 H 1.09000 * 111.02311 * 82.56169 * 20 19 18 33 33 H 1.09001 * 110.36862 * 274.74645 * 21 17 15 34 34 H 1.08997 * 110.37125 * 36.96308 * 21 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1471 -0.0182 2.3572 6 8 1.8572 1.1623 2.4119 7 6 2.6344 -0.7083 3.5524 8 1 2.7977 -1.7757 3.5309 9 6 2.8891 0.0155 4.7240 10 7 2.5790 1.2832 4.7892 11 14 3.6719 -0.8313 6.1935 12 1 5.1410 -0.6171 6.1636 13 1 3.1142 -0.2634 7.4471 14 1 3.3827 -2.2869 6.1381 15 6 2.0323 -0.7105 -1.2304 16 8 2.7295 -1.6965 -1.1191 17 7 1.7067 -0.2501 -2.4546 18 6 2.1257 -0.8436 -3.7327 19 6 1.5384 0.0294 -4.8616 20 6 1.2944 1.3914 -4.1510 21 6 0.8702 0.9314 -2.7336 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 2.2490 -1.6318 1.1526 26 1 2.7550 1.7844 5.6008 27 1 3.2137 -0.8520 -3.7985 28 1 1.7419 -1.8606 -3.8126 29 1 2.2545 0.1399 -5.6759 30 1 0.6007 -0.3904 -5.2256 31 1 0.4927 1.9471 -4.6375 32 1 2.2097 1.9821 -4.1128 33 1 -0.1854 0.6600 -2.7227 34 1 1.0669 1.7165 -2.0036 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127520267.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:10 Heat of formation + Delta-G solvation = -102.464937 kcal Electronic energy + Delta-G solvation = -17383.643309 eV Core-core repulsion = 14508.145743 eV Total energy + Delta-G solvation = -2875.497566 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.40088 -39.39777 -38.30532 -35.66838 -34.52189 -32.94295 -31.26141 -29.77693 -28.20982 -26.08638 -23.81599 -22.20603 -21.55581 -20.50398 -19.50215 -18.02587 -17.53594 -17.26727 -16.85033 -16.23815 -15.69041 -15.26771 -14.81791 -14.57951 -14.34955 -14.28760 -14.06556 -13.49404 -13.39503 -13.18443 -12.89502 -12.77707 -12.62688 -12.53401 -12.17670 -12.03882 -12.01263 -11.56016 -10.95926 -10.93961 -9.92294 -9.77611 -9.58116 -8.33189 -6.88252 1.39193 1.40165 1.42847 1.56319 1.80833 2.25165 2.43826 3.03640 3.35714 3.56118 3.65859 3.83418 4.05022 4.11121 4.23622 4.29050 4.43071 4.62624 4.70091 4.77270 4.86426 4.94171 5.01340 5.11412 5.17750 5.30314 5.31130 5.37163 5.83939 6.04973 6.20988 6.35968 6.84144 6.97303 7.44194 8.42508 8.62838 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.052198 B = 0.005197 C = 0.004942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.295156 B = 5386.330565 C = 5664.570806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.137 3.863 3 H 0.081 0.919 4 N -0.746 5.746 5 C 0.544 3.456 6 O -0.623 6.623 7 C -0.576 4.576 8 H 0.081 0.919 9 C 0.033 3.967 10 N -0.817 5.817 11 Si 0.998 3.002 12 H -0.264 1.264 13 H -0.267 1.267 14 H -0.252 1.252 15 C 0.528 3.472 16 O -0.576 6.576 17 N -0.615 5.615 18 C 0.096 3.904 19 C -0.117 4.117 20 C -0.126 4.126 21 C 0.080 3.920 22 H 0.047 0.953 23 H 0.100 0.900 24 H 0.059 0.941 25 H 0.393 0.607 26 H 0.277 0.723 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.407 -1.149 -17.673 18.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.028 3.972 3 H 0.099 0.901 4 N -0.401 5.401 5 C 0.349 3.651 6 O -0.510 6.510 7 C -0.612 4.612 8 H 0.099 0.901 9 C -0.183 4.183 10 N -0.446 5.446 11 Si 0.817 3.183 12 H -0.188 1.188 13 H -0.191 1.191 14 H -0.175 1.175 15 C 0.316 3.684 16 O -0.456 6.456 17 N -0.349 5.349 18 C -0.026 4.026 19 C -0.155 4.155 20 C -0.164 4.164 21 C -0.041 4.041 22 H 0.066 0.934 23 H 0.119 0.881 24 H 0.078 0.922 25 H 0.227 0.773 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.133 0.867 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.251 -0.674 -17.442 17.965 hybrid contribution 0.597 -0.651 0.858 1.232 sum -3.654 -1.325 -16.584 17.033 Atomic orbital electron populations 1.22139 0.92360 1.02617 1.03390 1.20424 0.96319 0.96620 0.83823 0.90071 1.45792 1.72263 1.13655 1.08356 1.18515 0.77467 0.86100 0.82996 1.90529 1.56657 1.18074 1.85748 1.21388 1.47836 0.96137 0.95870 0.90102 1.26917 0.93562 0.95167 1.02629 1.70158 1.36163 1.09941 1.28326 0.85002 0.78478 0.79267 0.75513 1.18844 1.19128 1.17540 1.20526 0.79445 0.83913 0.84498 1.90628 1.39907 1.28347 1.86724 1.48523 1.51264 1.30465 1.04626 1.22159 0.99628 0.98148 0.82691 1.22720 1.02804 0.94108 0.95874 1.22898 1.03391 0.97306 0.92770 1.22868 0.95626 0.86562 0.99070 0.93428 0.88122 0.92199 0.77267 0.91344 0.92709 0.91813 0.88119 0.88673 0.86675 0.90819 0.88732 0.90726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.05 9.29 71.98 0.67 -4.38 16 2 C 0.14 5.70 2.33 44.24 0.10 5.80 16 3 H 0.08 3.65 7.28 -2.39 -0.02 3.64 16 4 N -0.75 -37.60 4.95 -450.40 -2.23 -39.82 16 5 C 0.54 33.03 7.71 86.36 0.67 33.70 16 6 O -0.62 -41.82 14.71 -4.30 -0.06 -41.89 16 7 C -0.58 -34.39 9.53 24.83 0.24 -34.15 16 8 H 0.08 4.47 7.85 -2.91 -0.02 4.45 16 9 C 0.03 1.88 5.49 85.30 0.47 2.35 16 10 N -0.82 -50.43 11.85 21.84 0.26 -50.17 16 11 Si 1.00 42.33 29.56 68.60 2.03 44.36 16 12 H -0.26 -10.74 7.11 99.48 0.71 -10.04 16 13 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 14 H -0.25 -10.09 7.11 99.48 0.71 -9.39 16 15 C 0.53 19.78 7.28 87.66 0.64 20.42 16 16 O -0.58 -25.56 16.16 -3.02 -0.05 -25.60 16 17 N -0.62 -16.70 3.32 -811.76 -2.70 -19.40 16 18 C 0.10 2.05 6.86 86.73 0.59 2.64 16 19 C -0.12 -1.37 6.98 31.92 0.22 -1.14 16 20 C -0.13 -1.52 7.10 32.13 0.23 -1.29 16 21 C 0.08 1.51 5.14 86.86 0.45 1.96 16 22 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.10 2.54 4.99 -2.39 -0.01 2.53 16 24 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 25 H 0.39 19.18 7.77 -92.71 -0.72 18.46 16 26 H 0.28 15.35 8.29 -92.71 -0.77 14.58 16 27 H 0.05 1.29 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 1.42 7.07 -2.39 -0.02 1.40 16 34 H 0.07 1.56 7.35 -2.39 -0.02 1.55 16 Total: -1.00 -81.48 285.34 1.91 -79.57 By element: Atomic # 1 Polarization: 26.66 SS G_CDS: 0.39 Total: 27.05 kcal Atomic # 6 Polarization: 21.63 SS G_CDS: 4.27 Total: 25.90 kcal Atomic # 7 Polarization: -104.73 SS G_CDS: -4.67 Total: -109.39 kcal Atomic # 8 Polarization: -67.38 SS G_CDS: -0.11 Total: -67.49 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -81.48 1.91 -79.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127520267.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.895 kcal (2) G-P(sol) polarization free energy of solvation -81.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds