Wall clock time and date at job start Mon Mar 30 2020 03:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.01700 * 2 1 4 4 C 1.53869 * 110.07634 * 121.41682 * 2 1 3 5 5 C 1.54266 * 106.59800 * 119.30516 * 4 2 1 6 6 C 1.55238 * 104.23333 * 23.61579 * 5 4 2 7 7 H 1.08993 * 110.76342 * 80.31404 * 6 5 4 8 8 N 1.46498 * 110.89672 * 203.79695 * 6 5 4 9 9 C 1.34776 * 119.99583 * 268.20957 * 8 6 5 10 10 O 1.21440 * 120.00211 * 0.02562 * 9 8 6 11 11 C 1.48833 * 120.00281 * 180.02562 * 9 8 6 12 12 O 1.21503 * 119.99863 * 0.02562 * 11 9 8 13 13 N 1.34776 * 120.00281 * 180.02562 * 11 9 8 14 14 C 1.36119 * 120.00142 * 179.97438 * 13 11 9 15 15 H 1.08003 * 119.99945 * 0.02562 * 14 13 11 16 16 C 1.39584 * 120.00226 * 180.02562 * 14 13 11 17 17 N 1.31017 * 119.99849 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00137 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47126 * 59.99768 * 18 16 14 20 20 H 1.48495 * 109.47225 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.47074 * 300.00277 * 18 16 14 22 22 C 1.54266 * 110.03121 * 238.61124 * 2 1 3 23 23 H 1.08995 * 109.47464 * 181.39052 * 1 2 3 24 24 H 1.09007 * 109.46772 * 301.39061 * 1 2 3 25 25 H 1.09005 * 109.47226 * 61.38587 * 1 2 3 26 26 H 1.08999 * 110.04012 * 238.59163 * 4 2 1 27 27 H 1.09003 * 110.03070 * 0.02690 * 4 2 1 28 28 H 1.09005 * 110.48526 * 142.29451 * 5 4 2 29 29 H 1.09007 * 110.48724 * 264.79935 * 5 4 2 30 30 H 0.96997 * 120.00781 * 88.21611 * 8 6 5 31 31 H 0.96998 * 120.00222 * 0.02562 * 13 11 9 32 32 H 0.97000 * 119.99595 * 179.97438 * 17 16 14 33 33 H 1.09002 * 110.48629 * 335.73471 * 22 2 1 34 34 H 1.08998 * 110.48744 * 98.24375 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0582 -0.7533 1.2333 5 6 2.8891 -1.9398 0.7026 6 6 3.3159 -1.4992 -0.7235 7 1 4.1722 -0.8264 -0.6799 8 7 3.6099 -2.6627 -1.5638 9 6 4.8675 -3.1423 -1.6343 10 8 5.7567 -2.6104 -1.0010 11 6 5.1665 -4.3240 -2.4884 12 8 4.2769 -4.8560 -3.1224 13 7 6.4239 -4.8039 -2.5585 14 6 6.6973 -5.8850 -3.3392 15 1 5.9065 -6.3578 -3.9028 16 6 7.9994 -6.3824 -3.4114 17 7 8.9586 -5.8091 -2.7273 18 14 8.3747 -7.8655 -4.4834 19 1 8.0299 -7.5564 -5.8943 20 1 9.8198 -8.1932 -4.3867 21 1 7.5723 -9.0263 -4.0208 22 6 2.0584 -0.7549 -1.2372 23 1 -0.3634 -1.0273 0.0249 24 1 -0.3633 0.5353 0.8773 25 1 -0.3634 0.4922 -0.9022 26 1 2.6876 -0.0949 1.8319 27 1 1.2245 -1.1198 1.8323 28 1 3.7657 -2.1024 1.3297 29 1 2.2800 -2.8427 0.6585 30 1 2.8997 -3.0878 -2.0694 31 1 7.1340 -4.3795 -2.0521 32 1 9.8634 -6.1550 -2.7773 33 1 1.3145 -1.4658 -1.5968 34 1 2.3266 -0.0528 -2.0267 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132702408.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:59:10 Heat of formation + Delta-G solvation = -96.158948 kcal Electronic energy + Delta-G solvation = -16943.102040 eV Core-core repulsion = 14067.877923 eV Total energy + Delta-G solvation = -2875.224118 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.73119 -38.32374 -36.93775 -34.46076 -33.53760 -31.39459 -30.40472 -28.41963 -25.94621 -24.82627 -22.83754 -20.53854 -19.95534 -19.18483 -18.30787 -16.92951 -16.28001 -15.69032 -15.17997 -14.63329 -14.52992 -13.93090 -13.75064 -13.39106 -13.16019 -12.83720 -12.56321 -12.50110 -11.85498 -11.73302 -11.38030 -11.16356 -11.07123 -10.82155 -10.68983 -10.56830 -10.44364 -10.41621 -10.30949 -9.69982 -8.68045 -8.25248 -8.21547 -6.66119 -3.98556 2.46647 3.16205 3.18074 3.19183 3.44693 4.06853 4.26801 4.52419 4.55093 4.71752 5.07848 5.18867 5.24073 5.28151 5.34438 5.40896 5.49781 5.53258 5.73799 5.79220 5.85577 5.98113 6.01051 6.05152 6.21738 6.29709 6.32080 6.87987 7.31674 7.71302 7.91094 8.34686 8.65387 8.97274 9.32997 9.86347 10.48725 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.064797 B = 0.004432 C = 0.004269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.017031 B = 6316.449269 C = 6556.652954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.095 4.095 3 H 0.073 0.927 4 C -0.118 4.118 5 C -0.137 4.137 6 C 0.139 3.861 7 H 0.096 0.904 8 N -0.708 5.708 9 C 0.514 3.486 10 O -0.547 6.547 11 C 0.393 3.607 12 O -0.599 6.599 13 N -0.499 5.499 14 C -0.307 4.307 15 H 0.112 0.888 16 C 0.031 3.969 17 N -0.869 5.869 18 Si 0.940 3.060 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.269 1.269 22 C -0.127 4.127 23 H 0.056 0.944 24 H 0.053 0.947 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.409 0.591 31 H 0.405 0.595 32 H 0.281 0.719 33 H 0.074 0.926 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.536 9.152 5.196 15.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.114 4.114 3 H 0.091 0.909 4 C -0.156 4.156 5 C -0.176 4.176 6 C 0.034 3.966 7 H 0.114 0.886 8 N -0.360 5.360 9 C 0.299 3.701 10 O -0.424 6.424 11 C 0.178 3.822 12 O -0.487 6.487 13 N -0.133 5.133 14 C -0.438 4.438 15 H 0.130 0.870 16 C -0.176 4.176 17 N -0.507 5.507 18 Si 0.765 3.235 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.194 1.194 22 C -0.165 4.165 23 H 0.075 0.925 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.245 0.755 31 H 0.240 0.760 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.238 9.161 5.267 15.426 hybrid contribution 0.349 -0.613 -0.363 0.793 sum -10.889 8.549 4.903 14.687 Atomic orbital electron populations 1.21882 0.94905 1.01873 1.01456 1.21670 0.95721 0.99388 0.94577 0.90876 1.22175 0.99352 0.96966 0.97131 1.22829 0.99967 0.98232 0.96571 1.21991 0.97652 0.87379 0.89585 0.88633 1.45653 1.10461 1.31627 1.48306 1.20697 0.82472 0.85040 0.81923 1.90680 1.45738 1.60402 1.45583 1.18989 0.84894 0.88405 0.89937 1.90576 1.45390 1.62666 1.50095 1.41559 1.07775 1.25850 1.38135 1.19838 0.95124 1.05833 1.22956 0.87035 1.25585 0.94978 0.99513 0.97494 1.69481 1.02125 1.40331 1.38792 0.85776 0.77424 0.80310 0.79964 1.19374 1.20595 1.19382 1.22714 0.96820 0.99326 0.97675 0.92494 0.92789 0.92743 0.91726 0.91578 0.91142 0.91221 0.75504 0.75995 0.90871 0.90766 0.91059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.84 37.16 0.33 -0.81 16 2 C -0.09 -0.87 3.50 -89.51 -0.31 -1.18 16 3 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.12 -1.17 6.46 -25.62 -0.17 -1.33 16 5 C -0.14 -1.75 6.53 -24.88 -0.16 -1.91 16 6 C 0.14 1.97 3.28 -65.75 -0.22 1.75 16 7 H 0.10 1.48 7.55 -51.93 -0.39 1.09 16 8 N -0.71 -12.29 5.18 -52.32 -0.27 -12.56 16 9 C 0.51 11.33 7.87 -11.88 -0.09 11.23 16 10 O -0.55 -12.96 16.11 5.42 0.09 -12.88 16 11 C 0.39 10.04 7.82 -11.88 -0.09 9.94 16 12 O -0.60 -16.19 16.03 5.36 0.09 -16.10 16 13 N -0.50 -13.50 5.25 -11.59 -0.06 -13.56 16 14 C -0.31 -8.53 9.67 -15.15 -0.15 -8.68 16 15 H 0.11 3.15 7.15 -52.48 -0.38 2.78 16 16 C 0.03 0.82 5.51 -17.40 -0.10 0.72 16 17 N -0.87 -23.44 13.03 55.53 0.72 -22.71 16 18 Si 0.94 20.17 29.56 -169.99 -5.02 15.15 16 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 C -0.13 -1.38 5.97 -25.07 -0.15 -1.53 16 23 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.59 7.67 -51.93 -0.40 0.19 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.41 6.71 8.03 -40.82 -0.33 6.38 16 31 H 0.40 11.03 7.35 -40.82 -0.30 10.73 16 32 H 0.28 7.03 8.30 -40.82 -0.34 6.69 16 33 H 0.07 0.77 7.73 -51.93 -0.40 0.37 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 290.85 15.07 4.38 4.38 Total: -1.00 -30.28 290.85 -5.89 -36.18 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -4.71 Total: 13.90 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -1.11 Total: 8.21 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 0.39 Total: -48.84 kcal Atomic # 8 Polarization: -29.15 SS G_CDS: 0.17 Total: -28.98 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.28 -5.89 -36.18 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132702408.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.983 kcal (2) G-P(sol) polarization free energy of solvation -30.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds