Wall clock time and date at job start Mon Mar 30 2020 04:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46752 * 2 1 4 4 N 1.46499 * 109.46820 * 240.00581 * 2 1 3 5 5 C 1.34770 * 120.00183 * 85.00183 * 4 2 1 6 6 O 1.21442 * 120.00269 * 359.97438 * 5 4 2 7 7 C 1.48838 * 120.00158 * 179.97438 * 5 4 2 8 8 O 1.21502 * 119.99330 * 359.71641 * 7 5 4 9 9 N 1.34778 * 119.99893 * 179.97438 * 7 5 4 10 10 C 1.36124 * 119.99562 * 179.97438 * 9 7 5 11 11 H 1.08001 * 119.99707 * 0.02562 * 10 9 7 12 12 C 1.39586 * 119.99825 * 179.97438 * 10 9 7 13 13 N 1.31013 * 120.00111 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99785 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47701 * 89.99726 * 14 12 10 16 16 H 1.48503 * 109.46866 * 209.99507 * 14 12 10 17 17 H 1.48503 * 109.47378 * 329.99125 * 14 12 10 18 18 C 1.52995 * 109.47205 * 120.00078 * 2 1 3 19 19 C 1.53773 * 113.61945 * 282.60016 * 18 2 1 20 20 C 1.53952 * 87.02181 * 220.04733 * 19 18 2 21 21 C 1.53780 * 87.11164 * 25.36229 * 20 19 18 22 22 H 1.09005 * 109.47327 * 60.39605 * 1 2 3 23 23 H 1.08999 * 109.47083 * 180.39656 * 1 2 3 24 24 H 1.09004 * 109.47329 * 300.39605 * 1 2 3 25 25 H 0.97003 * 119.99495 * 264.99602 * 4 2 1 26 26 H 0.96993 * 120.00371 * 359.97438 * 9 7 5 27 27 H 0.96998 * 120.00079 * 180.02562 * 13 12 10 28 28 H 1.09003 * 112.84744 * 53.79929 * 18 2 1 29 29 H 1.09005 * 113.61287 * 334.56408 * 19 18 2 30 30 H 1.09001 * 113.62022 * 105.46528 * 19 18 2 31 31 H 1.08994 * 113.53688 * 270.80682 * 20 19 18 32 32 H 1.09004 * 113.74265 * 139.93846 * 20 19 18 33 33 H 1.08994 * 113.61550 * 220.09595 * 21 20 19 34 34 H 1.08996 * 113.61600 * 89.18707 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0182 -0.6905 -1.1962 5 6 2.1469 -0.0181 -2.3571 6 8 1.8578 1.1601 -2.4117 7 6 2.6435 -0.7195 -3.5723 8 8 2.9377 -1.8970 -3.5164 9 7 2.7718 -0.0471 -4.7334 10 6 3.2264 -0.6885 -5.8446 11 1 3.4840 -1.7362 -5.7959 12 6 3.3587 0.0077 -7.0472 13 7 3.7959 -0.6097 -8.1168 14 14 2.9125 1.8196 -7.1314 15 1 4.1088 2.6395 -6.8124 16 1 2.4370 2.1492 -8.4990 17 1 1.8369 2.1107 -6.1498 18 6 2.0400 -0.7212 1.2492 19 6 1.9556 0.1278 2.5285 20 6 3.3266 -0.4583 2.9118 21 6 3.5687 -0.6716 1.4082 22 1 -0.3634 0.5077 -0.8935 23 1 -0.3633 -1.0276 0.0071 24 1 -0.3634 0.5200 0.8864 25 1 2.2489 -1.6317 -1.1527 26 1 2.5401 0.8937 -4.7771 27 1 3.8882 -0.1259 -8.9524 28 1 1.6217 -1.7216 1.3607 29 1 1.9765 1.2016 2.3420 30 1 1.1493 -0.1707 3.1984 31 1 3.2599 -1.3864 3.4793 32 1 4.0029 0.2670 3.3643 33 1 4.0628 -1.6147 1.1750 34 1 4.0315 0.1832 0.9149 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000137806515.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:13 Heat of formation + Delta-G solvation = -60.438076 kcal Electronic energy + Delta-G solvation = -17135.586203 eV Core-core repulsion = 14261.911059 eV Total energy + Delta-G solvation = -2873.675144 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.02238 -38.86156 -37.26372 -34.85982 -34.01642 -31.89143 -30.46691 -26.29022 -25.75091 -25.45830 -23.11637 -20.95408 -19.96277 -19.26605 -18.83711 -17.00929 -16.21566 -15.58858 -15.14431 -14.97611 -14.82090 -14.30664 -13.49998 -13.40802 -12.85970 -12.77644 -12.54841 -12.52309 -12.44563 -12.08973 -11.90455 -11.30271 -11.22933 -10.73332 -10.63756 -10.58410 -10.41646 -10.30680 -10.07796 -9.75977 -8.80727 -8.40602 -8.38830 -6.57692 -3.99302 2.32508 3.05051 3.08239 3.11167 3.29623 3.96591 4.16802 4.44620 4.50113 4.55625 4.73119 4.87186 5.12422 5.13869 5.23354 5.41818 5.56471 5.59818 5.64013 5.68176 5.73242 5.79852 5.89709 5.99864 6.12212 6.23156 6.39273 6.76461 7.27663 7.70851 7.93881 8.27406 8.54061 8.76522 9.20751 9.63096 10.52517 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.042708 B = 0.005241 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.458985 B = 5341.644417 C = 5552.900295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.151 3.849 3 H 0.087 0.913 4 N -0.705 5.705 5 C 0.515 3.485 6 O -0.552 6.552 7 C 0.404 3.596 8 O -0.579 6.579 9 N -0.528 5.528 10 C -0.309 4.309 11 H 0.127 0.873 12 C 0.053 3.947 13 N -0.850 5.850 14 Si 0.876 3.124 15 H -0.264 1.264 16 H -0.271 1.271 17 H -0.260 1.260 18 C -0.120 4.120 19 C -0.129 4.129 20 C -0.143 4.143 21 C -0.135 4.135 22 H 0.061 0.939 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.410 0.590 26 H 0.384 0.616 27 H 0.281 0.719 28 H 0.095 0.905 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.853 2.780 17.793 18.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.046 3.954 3 H 0.105 0.895 4 N -0.358 5.358 5 C 0.299 3.701 6 O -0.430 6.430 7 C 0.189 3.811 8 O -0.465 6.465 9 N -0.165 5.165 10 C -0.439 4.439 11 H 0.145 0.855 12 C -0.155 4.155 13 N -0.488 5.488 14 Si 0.700 3.300 15 H -0.189 1.189 16 H -0.195 1.195 17 H -0.184 1.184 18 C -0.139 4.139 19 C -0.167 4.167 20 C -0.180 4.180 21 C -0.173 4.173 22 H 0.080 0.920 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.246 0.754 26 H 0.218 0.782 27 H 0.092 0.908 28 H 0.113 0.887 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.810 2.862 17.555 18.190 hybrid contribution -0.235 0.895 -0.280 0.966 sum -4.046 3.756 17.275 18.136 Atomic orbital electron populations 1.22160 0.95433 1.02132 1.02344 1.20971 0.93978 0.97168 0.83289 0.89528 1.45697 1.66646 1.14817 1.08626 1.20612 0.77745 0.86650 0.85101 1.90667 1.50625 1.16189 1.85503 1.18893 0.90080 0.87925 0.84190 1.90619 1.56029 1.15418 1.84460 1.41830 1.54026 1.11892 1.08772 1.19560 1.40120 0.98821 0.85355 0.85533 1.25224 0.96279 0.99151 0.94893 1.69440 1.41130 1.37394 1.00802 0.86680 0.80074 0.84068 0.79149 1.18910 1.19545 1.18450 1.22863 0.96962 1.00019 0.94045 1.22902 0.97628 0.99791 0.96375 1.22846 0.97350 1.01070 0.96760 1.22903 0.95628 1.02704 0.96029 0.91973 0.92454 0.91841 0.75441 0.78175 0.90806 0.88698 0.89890 0.91355 0.90288 0.91511 0.91191 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.95 9.43 37.16 0.35 -1.60 16 2 C 0.15 1.96 2.28 -67.94 -0.15 1.81 16 3 H 0.09 1.24 7.49 -51.93 -0.39 0.86 16 4 N -0.71 -11.49 4.93 -54.44 -0.27 -11.76 16 5 C 0.51 10.66 7.83 -11.87 -0.09 10.56 16 6 O -0.55 -12.14 16.13 5.42 0.09 -12.05 16 7 C 0.40 9.89 7.82 -11.87 -0.09 9.80 16 8 O -0.58 -15.40 16.03 5.36 0.09 -15.31 16 9 N -0.53 -13.49 5.06 -11.58 -0.06 -13.55 16 10 C -0.31 -8.70 10.16 -15.14 -0.15 -8.86 16 11 H 0.13 3.96 7.37 -52.49 -0.39 3.58 16 12 C 0.05 1.42 5.51 -17.40 -0.10 1.32 16 13 N -0.85 -23.80 13.94 55.53 0.77 -23.03 16 14 Si 0.88 19.51 27.74 -169.99 -4.72 14.79 16 15 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.26 -5.63 6.53 56.52 0.37 -5.26 16 18 C -0.12 -1.21 3.17 -89.81 -0.28 -1.50 16 19 C -0.13 -1.09 7.50 -25.83 -0.19 -1.29 16 20 C -0.14 -1.20 8.09 -25.83 -0.21 -1.40 16 21 C -0.14 -1.40 7.51 -25.92 -0.19 -1.59 16 22 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.62 8.06 -51.93 -0.42 0.20 16 25 H 0.41 6.40 8.06 -40.82 -0.33 6.07 16 26 H 0.38 9.22 5.22 -40.82 -0.21 9.01 16 27 H 0.28 7.18 8.30 -40.82 -0.34 6.84 16 28 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.71 8.04 -51.93 -0.42 0.29 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 291.49 15.07 4.39 4.39 Total: -1.00 -30.62 291.49 -5.52 -36.14 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -4.70 Total: 13.11 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: -1.12 Total: 7.25 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: 0.45 Total: -48.33 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: 0.17 Total: -27.36 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -4.72 Total: 14.79 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.62 -5.52 -36.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137806515.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.293 kcal (2) G-P(sol) polarization free energy of solvation -30.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds