Wall clock time and date at job start Mon Mar 30 2020 04:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46752 * 2 1 4 4 N 1.46499 * 109.46820 * 240.00581 * 2 1 3 5 5 C 1.34770 * 120.00183 * 85.00183 * 4 2 1 6 6 O 1.21442 * 120.00269 * 359.97438 * 5 4 2 7 7 C 1.48838 * 120.00158 * 179.97438 * 5 4 2 8 8 O 1.21502 * 119.99330 * 359.71641 * 7 5 4 9 9 N 1.34778 * 119.99893 * 179.97438 * 7 5 4 10 10 C 1.36124 * 119.99562 * 179.97438 * 9 7 5 11 11 H 1.08001 * 119.99707 * 0.02562 * 10 9 7 12 12 C 1.39586 * 119.99825 * 179.97438 * 10 9 7 13 13 N 1.31013 * 120.00111 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99785 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47701 * 89.99726 * 14 12 10 16 16 H 1.48503 * 109.46866 * 209.99507 * 14 12 10 17 17 H 1.48503 * 109.47378 * 329.99125 * 14 12 10 18 18 C 1.52995 * 109.47205 * 120.00078 * 2 1 3 19 19 C 1.53773 * 113.61945 * 282.60016 * 18 2 1 20 20 C 1.53952 * 87.02181 * 220.04733 * 19 18 2 21 21 C 1.53780 * 87.11164 * 25.36229 * 20 19 18 22 22 H 1.09005 * 109.47327 * 60.39605 * 1 2 3 23 23 H 1.08999 * 109.47083 * 180.39656 * 1 2 3 24 24 H 1.09004 * 109.47329 * 300.39605 * 1 2 3 25 25 H 0.97003 * 119.99495 * 264.99602 * 4 2 1 26 26 H 0.96993 * 120.00371 * 359.97438 * 9 7 5 27 27 H 0.96998 * 120.00079 * 180.02562 * 13 12 10 28 28 H 1.09003 * 112.84744 * 53.79929 * 18 2 1 29 29 H 1.09005 * 113.61287 * 334.56408 * 19 18 2 30 30 H 1.09001 * 113.62022 * 105.46528 * 19 18 2 31 31 H 1.08994 * 113.53688 * 270.80682 * 20 19 18 32 32 H 1.09004 * 113.74265 * 139.93846 * 20 19 18 33 33 H 1.08994 * 113.61550 * 220.09595 * 21 20 19 34 34 H 1.08996 * 113.61600 * 89.18707 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0182 -0.6905 -1.1962 5 6 2.1469 -0.0181 -2.3571 6 8 1.8578 1.1601 -2.4117 7 6 2.6435 -0.7195 -3.5723 8 8 2.9377 -1.8970 -3.5164 9 7 2.7718 -0.0471 -4.7334 10 6 3.2264 -0.6885 -5.8446 11 1 3.4840 -1.7362 -5.7959 12 6 3.3587 0.0077 -7.0472 13 7 3.7959 -0.6097 -8.1168 14 14 2.9125 1.8196 -7.1314 15 1 4.1088 2.6395 -6.8124 16 1 2.4370 2.1492 -8.4990 17 1 1.8369 2.1107 -6.1498 18 6 2.0400 -0.7212 1.2492 19 6 1.9556 0.1278 2.5285 20 6 3.3266 -0.4583 2.9118 21 6 3.5687 -0.6716 1.4082 22 1 -0.3634 0.5077 -0.8935 23 1 -0.3633 -1.0276 0.0071 24 1 -0.3634 0.5200 0.8864 25 1 2.2489 -1.6317 -1.1527 26 1 2.5401 0.8937 -4.7771 27 1 3.8882 -0.1259 -8.9524 28 1 1.6217 -1.7216 1.3607 29 1 1.9765 1.2016 2.3420 30 1 1.1493 -0.1707 3.1984 31 1 3.2599 -1.3864 3.4793 32 1 4.0029 0.2670 3.3643 33 1 4.0628 -1.6147 1.1750 34 1 4.0315 0.1832 0.9149 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000137806515.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:13 Heat of formation + Delta-G solvation = -82.673013 kcal Electronic energy + Delta-G solvation = -17136.550383 eV Core-core repulsion = 14261.911059 eV Total energy + Delta-G solvation = -2874.639324 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.54825 -40.09900 -38.99095 -36.57947 -35.68047 -33.95950 -31.71161 -28.04007 -26.85612 -26.22308 -24.75827 -22.19151 -21.38380 -21.06042 -20.16240 -18.74050 -17.80611 -17.07232 -16.67955 -16.48448 -16.06836 -15.63742 -15.16524 -14.94984 -14.69524 -14.43010 -14.06780 -13.54481 -13.30406 -13.11642 -13.09199 -12.69558 -12.57065 -12.49370 -12.18689 -11.98943 -11.72270 -11.42905 -11.24895 -11.13196 -10.48610 -10.32782 -10.14630 -8.63421 -6.17517 0.52650 1.27906 1.32227 1.38012 1.74014 2.09306 2.28798 3.04564 3.06825 3.63211 3.71066 3.78271 3.86907 4.02046 4.27437 4.31310 4.42906 4.74524 4.86833 4.89596 4.90149 5.01419 5.11284 5.13759 5.25403 5.26729 5.31672 5.44196 5.63724 5.73009 6.10449 6.38738 6.58608 6.94068 7.14379 7.61469 8.51230 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.042708 B = 0.005241 C = 0.005041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.458985 B = 5341.644417 C = 5552.900295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.146 3.854 3 H 0.075 0.925 4 N -0.685 5.685 5 C 0.523 3.477 6 O -0.563 6.563 7 C 0.405 3.595 8 O -0.604 6.604 9 N -0.533 5.533 10 C -0.340 4.340 11 H 0.078 0.922 12 C 0.012 3.988 13 N -0.892 5.892 14 Si 0.948 3.052 15 H -0.252 1.252 16 H -0.256 1.256 17 H -0.249 1.249 18 C -0.116 4.116 19 C -0.121 4.121 20 C -0.134 4.134 21 C -0.147 4.147 22 H 0.036 0.964 23 H 0.066 0.934 24 H 0.091 0.909 25 H 0.414 0.586 26 H 0.393 0.607 27 H 0.291 0.709 28 H 0.109 0.891 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.941 4.282 20.012 21.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.043 3.957 3 H 0.094 0.906 4 N -0.337 5.337 5 C 0.305 3.695 6 O -0.442 6.442 7 C 0.190 3.810 8 O -0.491 6.491 9 N -0.171 5.171 10 C -0.470 4.470 11 H 0.096 0.904 12 C -0.193 4.193 13 N -0.529 5.529 14 Si 0.767 3.233 15 H -0.176 1.176 16 H -0.180 1.180 17 H -0.173 1.173 18 C -0.135 4.135 19 C -0.159 4.159 20 C -0.172 4.172 21 C -0.184 4.184 22 H 0.056 0.944 23 H 0.085 0.915 24 H 0.110 0.890 25 H 0.251 0.749 26 H 0.229 0.771 27 H 0.101 0.899 28 H 0.127 0.873 29 H 0.100 0.900 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.899 4.341 19.802 20.856 hybrid contribution 0.121 0.296 -0.846 0.904 sum -4.779 4.636 18.956 20.091 Atomic orbital electron populations 1.22131 0.94105 1.02882 1.02506 1.21300 0.94968 0.96681 0.82776 0.90639 1.45755 1.64689 1.14947 1.08270 1.19856 0.78255 0.86343 0.85037 1.90665 1.51534 1.16355 1.85652 1.19738 0.88323 0.87768 0.85157 1.90596 1.56469 1.16816 1.85231 1.41708 1.54697 1.12228 1.08480 1.19177 1.43037 0.97364 0.87389 0.90442 1.26069 0.95234 1.04327 0.93677 1.69545 1.41866 1.39840 1.01687 0.85597 0.80421 0.77174 0.80068 1.17571 1.17957 1.17332 1.22910 0.96575 1.00814 0.93201 1.22892 0.98290 0.99452 0.95228 1.22829 0.97308 1.01838 0.95181 1.22947 0.95730 1.01837 0.97915 0.94441 0.91460 0.88998 0.74915 0.77134 0.89900 0.87309 0.89961 0.89429 0.88976 0.91003 0.91621 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.40 9.43 71.98 0.68 -2.72 16 2 C 0.15 3.51 2.28 44.99 0.10 3.61 16 3 H 0.08 2.04 7.49 -2.39 -0.02 2.02 16 4 N -0.69 -21.58 4.93 -444.47 -2.19 -23.77 16 5 C 0.52 21.37 7.83 87.08 0.68 22.06 16 6 O -0.56 -24.17 16.13 -3.53 -0.06 -24.23 16 7 C 0.41 20.13 7.82 87.08 0.68 20.81 16 8 O -0.60 -33.02 16.03 -3.72 -0.06 -33.08 16 9 N -0.53 -27.65 5.06 -308.86 -1.56 -29.21 16 10 C -0.34 -19.93 10.16 84.35 0.86 -19.07 16 11 H 0.08 5.19 7.37 -2.91 -0.02 5.17 16 12 C 0.01 0.65 5.51 85.14 0.47 1.12 16 13 N -0.89 -51.10 13.94 21.76 0.30 -50.80 16 14 Si 0.95 39.76 27.74 68.60 1.90 41.66 16 15 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 16 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 17 H -0.25 -9.96 6.53 99.48 0.65 -9.31 16 18 C -0.12 -2.04 3.17 -10.27 -0.03 -2.07 16 19 C -0.12 -1.63 7.50 31.18 0.23 -1.39 16 20 C -0.13 -1.85 8.09 31.18 0.25 -1.60 16 21 C -0.15 -2.78 7.51 31.12 0.23 -2.55 16 22 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 23 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.09 1.47 8.06 -2.38 -0.02 1.45 16 25 H 0.41 12.51 8.06 -92.71 -0.75 11.77 16 26 H 0.39 18.69 5.22 -92.71 -0.48 18.20 16 27 H 0.29 14.98 8.30 -92.71 -0.77 14.21 16 28 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 1.15 8.04 -2.38 -0.02 1.13 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16 Total: -1.00 -68.14 291.49 2.32 -65.81 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -0.17 Total: 35.41 kcal Atomic # 6 Polarization: 14.04 SS G_CDS: 4.16 Total: 18.20 kcal Atomic # 7 Polarization: -100.33 SS G_CDS: -3.45 Total: -103.78 kcal Atomic # 8 Polarization: -57.19 SS G_CDS: -0.12 Total: -57.31 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 1.90 Total: 41.66 kcal Total: -68.14 2.32 -65.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000137806515.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.858 kcal (2) G-P(sol) polarization free energy of solvation -68.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds