Wall clock time and date at job start Mon Mar 30 2020 03:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08993 * 110.89211 * 54.29706 * 3 2 1 5 5 C 1.55160 * 111.00031 * 178.18171 * 3 2 1 6 6 C 1.54372 * 102.92049 * 153.54447 * 5 3 2 7 7 N 1.47026 * 107.28733 * 337.86240 * 6 5 3 8 8 C 1.34773 * 125.64595 * 178.94755 * 7 6 5 9 9 O 1.21449 * 119.99939 * 179.97438 * 8 7 6 10 10 C 1.48828 * 120.00372 * 359.94888 * 8 7 6 11 11 O 1.21500 * 119.99719 * 0.02562 * 10 8 7 12 12 N 1.34782 * 120.00202 * 180.02562 * 10 8 7 13 13 C 1.36112 * 120.00109 * 180.02562 * 12 10 8 14 14 H 1.08010 * 119.99939 * 359.97438 * 13 12 10 15 15 C 1.39584 * 120.00203 * 180.02562 * 13 12 10 16 16 N 1.31019 * 120.00122 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 119.99732 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.46884 * 90.00720 * 17 15 13 19 19 H 1.48507 * 109.47197 * 210.00318 * 17 15 13 20 20 H 1.48493 * 109.47568 * 330.00574 * 17 15 13 21 21 C 1.47419 * 108.70409 * 358.90227 * 7 6 5 22 22 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 23 23 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 26 26 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 27 27 H 1.08998 * 110.71543 * 271.93297 * 5 3 2 28 28 H 1.09000 * 110.72334 * 35.21108 * 5 3 2 29 29 H 1.08999 * 109.90139 * 218.41985 * 6 5 3 30 30 H 1.09008 * 109.97371 * 97.33717 * 6 5 3 31 31 H 0.97000 * 119.99691 * 0.02562 * 12 10 8 32 32 H 0.96996 * 119.99837 * 179.97438 * 16 15 13 33 33 H 1.08996 * 110.37223 * 265.29400 * 21 7 6 34 34 H 1.08999 * 110.45981 * 143.01618 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6093 2.0070 0.8269 5 6 3.5903 1.4842 0.0460 6 6 3.9195 2.8329 -0.6291 7 7 2.7637 3.1988 -1.4608 8 6 2.6506 4.3212 -2.1983 9 8 1.6456 4.5206 -2.8504 10 6 3.7570 5.3165 -2.2132 11 8 4.7624 5.1170 -1.5608 12 7 3.6436 6.4392 -2.9503 13 6 4.6557 7.3492 -2.9643 14 1 5.5495 7.1719 -2.3843 15 6 4.5381 8.5122 -3.7272 16 7 5.5125 9.3879 -3.7411 17 14 2.9920 8.8192 -4.7296 18 1 2.0049 9.5590 -3.9028 19 1 3.3325 9.6228 -5.9311 20 1 2.4096 7.5202 -5.1517 21 6 1.7494 2.1342 -1.3554 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3635 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 3.9460 1.4709 1.0762 28 1 4.0154 0.6557 -0.5207 29 1 4.8071 2.7286 -1.2531 30 1 4.0875 3.5977 0.1293 31 1 2.8408 6.5986 -3.4708 32 1 5.4309 10.1959 -4.2715 33 1 1.8584 1.4238 -2.1748 34 1 0.7468 2.5617 -1.3558 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159701636.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:37 Heat of formation + Delta-G solvation = -75.369737 kcal Electronic energy + Delta-G solvation = -17259.102457 eV Core-core repulsion = 14384.779827 eV Total energy + Delta-G solvation = -2874.322630 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.99882 -38.20036 -36.94841 -34.53550 -33.68559 -31.88213 -30.40865 -28.30119 -26.12483 -24.51898 -22.38094 -21.52836 -20.20266 -19.26867 -18.42916 -16.67140 -16.24319 -15.82970 -15.08256 -15.02009 -14.12982 -13.86636 -13.71624 -13.32992 -13.10085 -12.90786 -12.68585 -12.53047 -12.35455 -12.17998 -11.84233 -11.29316 -11.26911 -10.86069 -10.69758 -10.65328 -10.64539 -10.40152 -10.07121 -9.75050 -8.44373 -8.33941 -8.31425 -6.57238 -3.98758 2.31487 3.04991 3.08157 3.11547 3.16638 3.97155 4.14825 4.33164 4.62200 4.67842 4.73315 5.07390 5.13641 5.22605 5.24779 5.39369 5.44900 5.63361 5.67451 5.72091 5.80264 5.89671 5.91818 6.01369 6.17190 6.21328 6.31068 6.60679 7.28438 7.70804 7.89914 8.20400 8.51274 8.75941 9.21007 9.63362 10.52950 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.048368 B = 0.005448 C = 0.004955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.758817 B = 5138.314808 C = 5649.426786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.111 4.111 3 C -0.104 4.104 4 H 0.085 0.915 5 C -0.132 4.132 6 C 0.115 3.885 7 N -0.601 5.601 8 C 0.527 3.473 9 O -0.552 6.552 10 C 0.408 3.592 11 O -0.572 6.572 12 N -0.529 5.529 13 C -0.308 4.308 14 H 0.127 0.873 15 C 0.053 3.947 16 N -0.851 5.851 17 Si 0.875 3.125 18 H -0.264 1.264 19 H -0.271 1.271 20 H -0.260 1.260 21 C 0.111 3.889 22 H 0.054 0.946 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.383 0.617 32 H 0.281 0.719 33 H 0.066 0.934 34 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.779 -15.305 5.821 18.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.103 0.897 5 C -0.170 4.170 6 C -0.008 4.008 7 N -0.336 5.336 8 C 0.313 3.687 9 O -0.430 6.430 10 C 0.193 3.807 11 O -0.458 6.458 12 N -0.166 5.166 13 C -0.438 4.438 14 H 0.145 0.855 15 C -0.155 4.155 16 N -0.488 5.488 17 Si 0.700 3.300 18 H -0.189 1.189 19 H -0.195 1.195 20 H -0.185 1.185 21 C -0.012 4.012 22 H 0.073 0.927 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.218 0.782 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.560 -15.034 5.768 17.789 hybrid contribution -1.059 0.422 -0.838 1.415 sum -8.619 -14.612 4.929 17.666 Atomic orbital electron populations 1.21812 0.95739 1.01550 1.02175 1.21453 0.95969 0.95120 1.02307 1.22442 0.95991 0.96398 0.97477 0.89704 1.22833 0.95145 0.97566 1.01466 1.22066 0.88649 0.95468 0.94577 1.48137 1.19305 1.19498 1.46648 1.20427 0.87970 0.81550 0.78715 1.90677 1.32130 1.77003 1.43224 1.18745 0.88791 0.84795 0.88375 1.90605 1.31368 1.77314 1.46528 1.41809 1.18068 1.17369 1.39367 1.19545 0.98518 0.97622 1.28086 0.85515 1.25215 0.97851 0.95352 0.97120 1.69442 1.31447 1.09678 1.38256 0.86687 0.82749 0.79782 0.80802 1.18907 1.19534 1.18464 1.22287 0.92972 0.89199 0.96732 0.92672 0.92436 0.92795 0.91642 0.91513 0.90101 0.90727 0.90500 0.90331 0.78202 0.90818 0.91600 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 9.79 37.16 0.36 -0.84 16 2 C -0.11 -0.89 5.44 -26.73 -0.15 -1.04 16 3 C -0.10 -1.08 3.04 -88.47 -0.27 -1.35 16 4 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 5 C -0.13 -1.42 6.42 -24.87 -0.16 -1.58 16 6 C 0.12 1.79 5.49 -3.04 -0.02 1.78 16 7 N -0.60 -10.69 3.33 -171.23 -0.57 -11.26 16 8 C 0.53 11.54 7.89 -11.88 -0.09 11.45 16 9 O -0.55 -12.82 16.73 5.41 0.09 -12.73 16 10 C 0.41 10.16 7.78 -11.87 -0.09 10.07 16 11 O -0.57 -15.06 13.66 5.37 0.07 -14.99 16 12 N -0.53 -13.66 5.06 -11.59 -0.06 -13.72 16 13 C -0.31 -8.70 10.16 -15.15 -0.15 -8.85 16 14 H 0.13 3.96 7.37 -52.48 -0.39 3.57 16 15 C 0.05 1.42 5.51 -17.40 -0.10 1.32 16 16 N -0.85 -23.86 13.94 55.53 0.77 -23.08 16 17 Si 0.88 19.63 27.74 -169.99 -4.72 14.92 16 18 H -0.26 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 20 H -0.26 -5.69 6.53 56.52 0.37 -5.32 16 21 C 0.11 1.52 5.71 -2.53 -0.01 1.50 16 22 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.06 0.48 7.59 -51.93 -0.39 0.09 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.52 8.04 -51.93 -0.42 0.10 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.72 8.04 -51.93 -0.42 0.30 16 29 H 0.08 1.29 7.69 -51.93 -0.40 0.89 16 30 H 0.08 1.33 7.57 -51.92 -0.39 0.94 16 31 H 0.38 9.36 5.22 -40.82 -0.21 9.15 16 32 H 0.28 7.19 8.30 -40.82 -0.34 6.86 16 33 H 0.07 0.85 7.96 -51.93 -0.41 0.44 16 34 H 0.08 1.08 8.00 -51.93 -0.42 0.66 16 LS Contribution 284.90 15.07 4.29 4.29 Total: -1.00 -31.03 284.90 -5.52 -36.54 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -4.73 Total: 7.56 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -0.68 Total: 12.45 kcal Atomic # 7 Polarization: -48.20 SS G_CDS: 0.15 Total: -48.05 kcal Atomic # 8 Polarization: -27.88 SS G_CDS: 0.16 Total: -27.72 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.72 Total: 14.92 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.03 -5.52 -36.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159701636.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.825 kcal (2) G-P(sol) polarization free energy of solvation -31.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds