Wall clock time and date at job start Mon Mar 30 2020 03:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47156 * 2 1 4 4 O 1.21280 * 120.00005 * 359.97438 * 3 2 1 5 5 N 1.34774 * 119.99675 * 180.02562 * 3 2 1 6 6 C 1.46968 * 120.59242 * 179.97438 * 5 3 2 7 7 C 1.53365 * 108.63820 * 235.24772 * 6 5 3 8 8 N 1.46966 * 108.63402 * 310.57615 * 7 6 5 9 9 C 1.34777 * 120.59464 * 235.20106 * 8 7 6 10 10 O 1.21686 * 119.99982 * 5.22418 * 9 8 7 11 11 C 1.46371 * 120.00043 * 185.21833 * 9 8 7 12 12 H 1.07992 * 120.00360 * 354.99064 * 11 9 8 13 13 C 1.40054 * 119.99966 * 174.98237 * 11 9 8 14 14 N 1.30673 * 119.99691 * 0.02562 * 13 11 9 15 15 Si 1.86795 * 120.00179 * 180.02562 * 13 11 9 16 16 H 1.48493 * 109.47393 * 179.97438 * 15 13 11 17 17 H 1.48494 * 109.47198 * 300.00255 * 15 13 11 18 18 H 1.48507 * 109.47275 * 60.00111 * 15 13 11 19 19 C 1.46966 * 118.81172 * 55.47838 * 8 7 6 20 20 C 1.46966 * 120.59674 * 0.02562 * 5 3 2 21 21 H 1.08996 * 109.47051 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47170 * 300.00014 * 1 2 3 23 23 H 1.08992 * 109.47111 * 60.00136 * 1 2 3 24 24 H 1.09004 * 109.47170 * 239.99986 * 2 1 3 25 25 H 1.09006 * 109.47021 * 120.00092 * 2 1 3 26 26 H 1.09002 * 109.60813 * 115.49903 * 6 5 3 27 27 H 1.09008 * 109.74822 * 355.07617 * 6 5 3 28 28 H 1.08998 * 109.61339 * 190.82833 * 7 6 5 29 29 H 1.08995 * 109.75272 * 70.39927 * 7 6 5 30 30 H 0.97000 * 119.99587 * 180.02562 * 14 13 11 31 31 H 1.08993 * 109.61294 * 64.26706 * 19 8 7 32 32 H 1.09002 * 109.60786 * 184.78204 * 19 8 7 33 33 H 1.09007 * 109.60611 * 244.49591 * 20 5 3 34 34 H 1.08995 * 109.60794 * 4.83547 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 -0.0005 5 7 3.3574 1.6670 -0.0005 6 6 3.8617 3.0475 -0.0011 7 6 4.8075 3.2233 -1.1955 8 7 5.7741 2.1162 -1.1960 9 6 7.0992 2.3624 -1.1974 10 8 7.5057 3.5054 -1.1023 11 6 8.0492 1.2550 -1.3132 12 1 7.6927 0.2356 -1.3160 13 6 9.4208 1.5173 -1.4205 14 7 9.8523 2.7507 -1.4168 15 14 10.6332 0.1041 -1.5690 16 1 12.0130 0.6439 -1.6686 17 1 10.5273 -0.7670 -0.3710 18 1 10.3233 -0.6883 -2.7861 19 6 5.2698 0.7357 -1.2011 20 6 4.3239 0.5599 -0.0017 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 4.4027 3.2396 0.9255 27 1 3.0279 3.7441 -0.0891 28 1 5.3375 4.1715 -1.1060 29 1 4.2357 3.2100 -2.1233 30 1 10.8022 2.9324 -1.4915 31 1 4.7280 0.5476 -2.1280 32 1 6.1052 0.0408 -1.1152 33 1 4.8980 0.5746 0.9249 34 1 3.7937 -0.3884 -0.0885 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169820154.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:11 Heat of formation + Delta-G solvation = -67.746118 kcal Electronic energy + Delta-G solvation = -17597.385602 eV Core-core repulsion = 14723.393557 eV Total energy + Delta-G solvation = -2873.992045 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.97551 -37.97767 -35.85103 -33.24803 -32.73676 -32.50131 -30.84838 -27.46472 -26.21993 -24.40031 -23.04993 -21.76728 -19.74883 -18.41317 -17.30269 -16.18964 -15.79665 -15.60936 -15.50436 -14.54405 -14.28704 -14.10178 -13.82956 -13.71741 -12.72275 -12.63072 -12.43941 -11.91797 -11.78006 -11.65067 -11.39868 -11.22114 -11.19347 -11.01817 -10.96018 -10.74882 -10.30321 -10.13001 -9.59622 -8.94686 -8.62934 -7.68641 -7.27873 -6.27758 -4.74151 2.76865 3.09708 3.13657 3.16260 3.17455 4.01468 4.42920 4.48616 4.58645 4.97501 5.03352 5.21450 5.30691 5.46001 5.52610 5.56547 5.63374 5.70475 5.85179 5.94565 5.96081 6.04739 6.14443 6.25773 6.34899 6.50752 6.74227 7.36364 7.46866 7.59440 8.01394 8.23198 8.32477 8.93288 9.31842 10.48285 10.66681 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.042917 B = 0.005913 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.267845 B = 4734.229833 C = 5273.590348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.144 4.144 3 C 0.510 3.490 4 O -0.553 6.553 5 N -0.607 5.607 6 C 0.098 3.902 7 C 0.107 3.893 8 N -0.643 5.643 9 C 0.559 3.441 10 O -0.575 6.575 11 C -0.546 4.546 12 H 0.073 0.927 13 C 0.088 3.912 14 N -0.766 5.766 15 Si 0.908 3.092 16 H -0.280 1.280 17 H -0.267 1.267 18 H -0.267 1.267 19 C 0.109 3.891 20 C 0.089 3.911 21 H 0.058 0.942 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.093 0.907 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.096 0.904 29 H 0.046 0.954 30 H 0.270 0.730 31 H 0.047 0.953 32 H 0.106 0.894 33 H 0.074 0.926 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.052 -8.648 2.188 14.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.184 4.184 3 C 0.298 3.702 4 O -0.432 6.432 5 N -0.340 5.340 6 C -0.025 4.025 7 C -0.017 4.017 8 N -0.382 5.382 9 C 0.365 3.635 10 O -0.458 6.458 11 C -0.582 4.582 12 H 0.091 0.909 13 C -0.132 4.132 14 N -0.395 5.395 15 Si 0.732 3.268 16 H -0.205 1.205 17 H -0.192 1.192 18 H -0.192 1.192 19 C -0.017 4.017 20 C -0.035 4.035 21 H 0.077 0.923 22 H 0.078 0.922 23 H 0.079 0.921 24 H 0.111 0.889 25 H 0.109 0.891 26 H 0.086 0.914 27 H 0.110 0.890 28 H 0.114 0.886 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.092 0.908 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.043 -7.367 2.229 13.461 hybrid contribution 0.682 -0.844 -0.086 1.089 sum -10.362 -8.211 2.143 13.394 Atomic orbital electron populations 1.21519 0.93285 1.01261 1.03214 1.21650 0.98294 0.94280 1.04157 1.20761 0.81771 0.91768 0.75859 1.90654 1.54911 1.46685 1.50922 1.48145 1.05421 1.07949 1.72464 1.22059 0.98056 0.82600 0.99772 1.21503 0.90676 0.94050 0.95511 1.48193 1.06251 1.03506 1.80276 1.18289 0.78988 0.90040 0.76192 1.90599 1.76539 1.23769 1.54870 1.20909 0.90650 0.92542 1.54110 0.90915 1.25731 0.98925 0.95965 0.92619 1.69997 1.15187 1.19559 1.34721 0.86433 0.79301 0.81575 0.79477 1.20513 1.19202 1.19229 1.21880 0.97512 0.87039 0.95244 1.22393 0.91364 0.88925 1.00825 0.92288 0.92159 0.92085 0.88909 0.89072 0.91405 0.89047 0.88616 0.93556 0.91911 0.93442 0.87611 0.90807 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.20 37.16 0.34 -1.00 16 2 C -0.14 -1.49 4.76 -27.88 -0.13 -1.62 16 3 C 0.51 7.61 7.70 -10.99 -0.08 7.53 16 4 O -0.55 -10.10 15.39 5.56 0.09 -10.02 16 5 N -0.61 -9.36 2.95 -172.24 -0.51 -9.87 16 6 C 0.10 1.69 6.59 -3.60 -0.02 1.66 16 7 C 0.11 2.12 6.60 -3.60 -0.02 2.09 16 8 N -0.64 -14.10 2.94 -173.91 -0.51 -14.62 16 9 C 0.56 15.36 7.62 -12.99 -0.10 15.26 16 10 O -0.58 -18.19 14.45 5.20 0.08 -18.12 16 11 C -0.55 -14.57 8.87 -35.63 -0.32 -14.89 16 12 H 0.07 1.72 5.66 -52.49 -0.30 1.43 16 13 C 0.09 2.35 5.50 -17.36 -0.10 2.26 16 14 N -0.77 -22.35 11.84 55.55 0.66 -21.69 16 15 Si 0.91 19.23 29.56 -169.99 -5.02 14.20 16 16 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 18 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 19 C 0.11 1.84 6.51 -3.39 -0.02 1.82 16 20 C 0.09 1.22 6.52 -3.39 -0.02 1.20 16 21 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 22 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 23 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 24 H 0.09 0.82 7.72 -51.93 -0.40 0.42 16 25 H 0.09 0.78 7.91 -51.93 -0.41 0.37 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.09 1.54 7.00 -51.92 -0.36 1.18 16 28 H 0.10 2.08 6.99 -51.93 -0.36 1.71 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.27 7.17 8.29 -40.82 -0.34 6.83 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.11 1.82 5.34 -51.93 -0.28 1.54 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.09 0.85 5.91 -51.93 -0.31 0.54 16 LS Contribution 280.04 15.07 4.22 4.22 Total: -1.00 -34.52 280.04 -5.99 -40.51 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -4.51 Total: 1.07 kcal Atomic # 6 Polarization: 14.79 SS G_CDS: -0.48 Total: 14.31 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -0.36 Total: -46.18 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: 0.16 Total: -28.13 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.02 Total: 14.20 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -34.52 -5.99 -40.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169820154.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.240 kcal (2) G-P(sol) polarization free energy of solvation -34.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds