Wall clock time and date at job start Mon Mar 30 2020 03:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99583 * 2 1 4 4 H 1.48504 * 109.46874 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47100 * 299.99806 * 3 2 1 6 6 H 1.48504 * 109.47050 * 60.00225 * 3 2 1 7 7 C 1.37878 * 120.00590 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00463 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99641 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47084 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99961 * 179.97438 * 10 9 7 12 12 O 1.21581 * 120.00243 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99891 * 179.97438 * 11 10 9 14 14 C 1.39243 * 119.99896 * 179.97438 * 13 11 10 15 15 C 1.31905 * 119.99814 * 174.62856 * 14 13 11 16 16 C 1.51525 * 121.18621 * 353.82017 * 15 14 13 17 17 C 1.53367 * 108.08889 * 228.39842 * 16 15 14 18 18 O 1.42885 * 109.30916 * 307.80198 * 17 16 15 19 19 C 1.42895 * 114.50060 * 64.91040 * 18 17 16 20 20 C 1.51511 * 121.21355 * 173.86783 * 15 14 13 21 21 H 0.96997 * 120.00209 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47004 * 59.99800 * 9 7 2 23 23 H 1.09000 * 109.46802 * 300.00019 * 9 7 2 24 24 H 0.96999 * 119.99981 * 359.97438 * 10 9 7 25 25 H 0.96998 * 120.00211 * 0.02562 * 13 11 10 26 26 H 1.07997 * 120.00229 * 354.63853 * 14 13 11 27 27 H 1.09000 * 109.70570 * 108.76970 * 16 15 14 28 28 H 1.08999 * 109.77261 * 348.06745 * 16 15 14 29 29 H 1.08993 * 109.50423 * 187.84358 * 17 16 15 30 30 H 1.08998 * 109.49966 * 67.75777 * 17 16 15 31 31 H 1.09004 * 109.50350 * 55.00729 * 19 18 17 32 32 H 1.09000 * 109.50374 * 175.08640 * 19 18 17 33 33 H 1.08995 * 109.73524 * 11.91062 * 20 15 14 34 34 H 1.09010 * 109.73557 * 251.21360 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5586 -5.1056 0.0000 13 7 2.6299 -5.9077 -0.0005 14 6 2.1658 -7.2205 0.0005 15 6 3.0181 -8.2214 -0.1069 16 6 4.4895 -7.9740 -0.3715 17 6 4.9283 -8.8935 -1.5179 18 8 4.5506 -10.2380 -1.2161 19 6 3.1400 -10.4560 -1.1472 20 6 2.5614 -9.6596 0.0287 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 3.1568 -3.4353 -0.0009 25 1 3.5835 -5.7304 -0.0009 26 1 1.1079 -7.4192 0.0892 27 1 5.0673 -8.2012 0.5244 28 1 4.6431 -6.9329 -0.6552 29 1 6.0104 -8.8372 -1.6356 30 1 4.4447 -8.5784 -2.4425 31 1 2.6748 -10.1242 -2.0755 32 1 2.9427 -11.5179 -1.0005 33 1 1.4727 -9.7040 0.0032 34 1 2.9255 -10.0744 0.9688 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218752229.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:43 Heat of formation + Delta-G solvation = -72.023457 kcal Electronic energy + Delta-G solvation = -16630.714868 eV Core-core repulsion = 13756.537344 eV Total energy + Delta-G solvation = -2874.177524 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.94936 -38.98772 -35.99530 -34.26977 -32.94968 -32.23456 -31.38019 -28.10974 -26.64919 -24.03917 -23.11624 -22.16531 -20.45539 -19.06485 -18.24695 -16.82098 -16.20801 -16.00071 -15.35356 -15.01566 -14.96450 -14.80408 -14.12979 -13.93097 -13.46706 -13.14778 -12.49407 -12.41777 -12.20021 -12.04995 -11.51785 -11.07577 -10.99630 -10.87375 -10.82492 -10.55865 -10.37176 -9.86287 -9.67191 -9.43033 -8.81726 -8.13020 -7.62624 -6.21401 -4.28671 2.18440 3.16849 3.20732 3.28631 3.31903 3.73641 3.84721 4.27896 4.66908 4.81058 4.84592 4.91624 5.08806 5.15065 5.19776 5.25990 5.44080 5.48715 5.61476 5.77439 5.83876 5.92869 6.18193 6.44553 6.99321 7.06127 7.07695 7.32618 7.45943 7.46365 7.77256 7.93422 8.61896 8.77398 9.11200 9.38446 10.88821 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.054268 B = 0.003918 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.837265 B = 7144.812123 C = 7540.082155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.544 4.544 8 H 0.064 0.936 9 C 0.264 3.736 10 N -0.721 5.721 11 C 0.687 3.313 12 O -0.587 6.587 13 N -0.690 5.690 14 C 0.139 3.861 15 C -0.245 4.245 16 C -0.105 4.105 17 C 0.068 3.932 18 O -0.386 6.386 19 C 0.064 3.936 20 C -0.091 4.091 21 H 0.266 0.734 22 H 0.028 0.972 23 H 0.028 0.972 24 H 0.389 0.611 25 H 0.399 0.601 26 H 0.148 0.852 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.318 -16.457 -1.422 18.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.583 4.583 8 H 0.082 0.918 9 C 0.143 3.857 10 N -0.373 5.373 11 C 0.387 3.613 12 O -0.464 6.464 13 N -0.335 5.335 14 C 0.022 3.978 15 C -0.252 4.252 16 C -0.142 4.142 17 C -0.009 4.009 18 O -0.305 6.305 19 C -0.013 4.013 20 C -0.130 4.130 21 H 0.076 0.924 22 H 0.046 0.954 23 H 0.046 0.954 24 H 0.221 0.779 25 H 0.235 0.765 26 H 0.166 0.834 27 H 0.092 0.908 28 H 0.087 0.913 29 H 0.110 0.890 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.127 -16.478 -1.394 18.426 hybrid contribution 1.048 1.428 0.001 1.772 sum 9.175 -15.049 -1.393 17.681 Atomic orbital electron populations 1.69980 1.06115 1.27305 1.48761 1.24947 0.94930 0.99474 0.94630 0.86336 0.79780 0.82839 0.77799 1.19637 1.20752 1.20744 1.21236 0.93330 0.90294 1.53398 0.91805 1.19082 0.87742 0.80938 0.97904 1.45796 1.11161 1.04265 1.76031 1.16229 0.85179 0.81245 0.78619 1.90899 1.13929 1.84066 1.57555 1.43100 1.09767 1.04761 1.75895 1.20699 0.99215 0.81654 0.96213 1.21178 0.95015 0.94313 1.14711 1.21116 0.94023 0.99517 0.99582 1.22561 0.99970 0.82123 0.96267 1.87837 1.22933 1.27897 1.91809 1.22629 0.81405 0.99841 0.97388 1.21017 1.00628 0.92065 0.99241 0.92413 0.95432 0.95438 0.77879 0.76500 0.83431 0.90777 0.91313 0.89046 0.93138 0.93120 0.89061 0.90603 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.79 13.29 55.43 0.74 -25.06 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.91 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.54 -14.56 9.28 -34.44 -0.32 -14.88 16 8 H 0.06 1.59 7.60 -52.49 -0.40 1.20 16 9 C 0.26 6.94 5.43 -5.19 -0.03 6.91 16 10 N -0.72 -15.03 5.55 -66.41 -0.37 -15.40 16 11 C 0.69 13.92 8.53 -86.92 -0.74 13.17 16 12 O -0.59 -14.35 15.95 5.29 0.08 -14.26 16 13 N -0.69 -10.35 5.23 -16.45 -0.09 -10.43 16 14 C 0.14 1.93 9.83 -16.09 -0.16 1.77 16 15 C -0.24 -2.83 5.46 -100.45 -0.55 -3.38 16 16 C -0.10 -1.05 5.99 -27.29 -0.16 -1.22 16 17 C 0.07 0.66 6.85 37.35 0.26 0.91 16 18 O -0.39 -4.32 10.68 -35.23 -0.38 -4.70 16 19 C 0.06 0.60 6.85 37.34 0.26 0.86 16 20 C -0.09 -0.90 6.25 -27.30 -0.17 -1.07 16 21 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 22 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.39 6.82 8.34 -40.82 -0.34 6.48 16 25 H 0.40 4.79 6.52 -40.82 -0.27 4.53 16 26 H 0.15 2.20 7.35 -52.49 -0.39 1.81 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.64 6.07 -51.93 -0.32 0.32 16 29 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.49 8.13 -51.93 -0.42 0.07 16 31 H 0.05 0.47 8.13 -51.93 -0.42 0.05 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.68 7.95 -51.93 -0.41 0.27 16 34 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 LS Contribution 288.72 15.07 4.35 4.35 Total: -1.00 -32.12 288.72 -7.03 -39.15 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -4.63 Total: 6.05 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: -1.72 Total: 4.74 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.28 Total: -50.89 kcal Atomic # 8 Polarization: -18.67 SS G_CDS: -0.29 Total: -18.96 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.12 -7.03 -39.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218752229.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.877 kcal (2) G-P(sol) polarization free energy of solvation -32.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds