Wall clock time and date at job start Mon Mar 30 2020 03:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86807 * 119.99583 * 2 1 4 4 H 1.48504 * 109.46874 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47100 * 299.99806 * 3 2 1 6 6 H 1.48504 * 109.47050 * 60.00225 * 3 2 1 7 7 C 1.37878 * 120.00590 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00463 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99641 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47084 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99961 * 179.97438 * 10 9 7 12 12 O 1.21581 * 120.00243 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99891 * 179.97438 * 11 10 9 14 14 C 1.39243 * 119.99896 * 179.97438 * 13 11 10 15 15 C 1.31905 * 119.99814 * 174.62856 * 14 13 11 16 16 C 1.51525 * 121.18621 * 353.82017 * 15 14 13 17 17 C 1.53367 * 108.08889 * 228.39842 * 16 15 14 18 18 O 1.42885 * 109.30916 * 307.80198 * 17 16 15 19 19 C 1.42895 * 114.50060 * 64.91040 * 18 17 16 20 20 C 1.51511 * 121.21355 * 173.86783 * 15 14 13 21 21 H 0.96997 * 120.00209 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47004 * 59.99800 * 9 7 2 23 23 H 1.09000 * 109.46802 * 300.00019 * 9 7 2 24 24 H 0.96999 * 119.99981 * 359.97438 * 10 9 7 25 25 H 0.96998 * 120.00211 * 0.02562 * 13 11 10 26 26 H 1.07997 * 120.00229 * 354.63853 * 14 13 11 27 27 H 1.09000 * 109.70570 * 108.76970 * 16 15 14 28 28 H 1.08999 * 109.77261 * 348.06745 * 16 15 14 29 29 H 1.08993 * 109.50423 * 187.84358 * 17 16 15 30 30 H 1.08998 * 109.49966 * 67.75777 * 17 16 15 31 31 H 1.09004 * 109.50350 * 55.00729 * 19 18 17 32 32 H 1.09000 * 109.50374 * 175.08640 * 19 18 17 33 33 H 1.08995 * 109.73524 * 11.91062 * 20 15 14 34 34 H 1.09010 * 109.73557 * 251.21360 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 1.7540 -4.8833 0.0000 12 8 0.5586 -5.1056 0.0000 13 7 2.6299 -5.9077 -0.0005 14 6 2.1658 -7.2205 0.0005 15 6 3.0181 -8.2214 -0.1069 16 6 4.4895 -7.9740 -0.3715 17 6 4.9283 -8.8935 -1.5179 18 8 4.5506 -10.2380 -1.2161 19 6 3.1400 -10.4560 -1.1472 20 6 2.5614 -9.6596 0.0287 21 1 -0.4850 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 3.1568 -3.4353 -0.0009 25 1 3.5835 -5.7304 -0.0009 26 1 1.1079 -7.4192 0.0892 27 1 5.0673 -8.2012 0.5244 28 1 4.6431 -6.9329 -0.6552 29 1 6.0104 -8.8372 -1.6356 30 1 4.4447 -8.5784 -2.4425 31 1 2.6748 -10.1242 -2.0755 32 1 2.9427 -11.5179 -1.0005 33 1 1.4727 -9.7040 0.0032 34 1 2.9255 -10.0744 0.9688 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218752229.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:43 Heat of formation + Delta-G solvation = -95.709267 kcal Electronic energy + Delta-G solvation = -16631.741962 eV Core-core repulsion = 13756.537344 eV Total energy + Delta-G solvation = -2875.204618 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.37665 -40.00047 -37.26097 -36.15975 -34.54499 -33.76542 -32.18363 -29.70532 -28.12244 -25.05837 -24.65180 -23.36302 -22.04378 -20.35985 -19.63811 -18.15032 -17.78680 -16.95686 -16.74185 -16.62184 -16.44265 -15.77673 -15.53854 -15.14539 -14.80125 -14.26559 -14.13507 -14.07940 -13.46639 -13.22772 -12.89483 -12.78283 -12.33236 -12.26928 -12.23355 -11.73716 -11.48003 -11.38926 -11.34069 -10.84236 -10.72245 -9.99189 -8.81710 -8.30023 -6.46630 1.03981 1.43857 1.45247 1.58094 1.74506 2.28442 2.38539 2.99446 3.05541 3.37363 3.78769 3.97411 4.10270 4.29958 4.35252 4.48226 4.57477 4.70867 4.80138 4.93465 4.97487 5.06574 5.14018 5.20284 5.22737 5.42593 5.42826 5.64572 5.81167 5.86342 6.19797 6.29870 6.64341 7.11342 7.23718 7.53558 8.82486 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.054268 B = 0.003918 C = 0.003713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.837265 B = 7144.812123 C = 7540.082155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.005 3.995 3 Si 0.986 3.014 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.555 4.555 8 H 0.085 0.915 9 C 0.282 3.718 10 N -0.715 5.715 11 C 0.689 3.311 12 O -0.635 6.635 13 N -0.668 5.668 14 C 0.098 3.902 15 C -0.207 4.207 16 C -0.110 4.110 17 C 0.065 3.935 18 O -0.400 6.400 19 C 0.062 3.938 20 C -0.097 4.097 21 H 0.269 0.731 22 H -0.010 1.010 23 H -0.011 1.011 24 H 0.407 0.593 25 H 0.416 0.584 26 H 0.131 0.869 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.112 0.888 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.062 -16.967 -1.537 20.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.810 3.190 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.159 3.841 10 N -0.368 5.368 11 C 0.389 3.611 12 O -0.517 6.517 13 N -0.315 5.315 14 C -0.017 4.017 15 C -0.214 4.214 16 C -0.148 4.148 17 C -0.011 4.011 18 O -0.319 6.319 19 C -0.014 4.014 20 C -0.135 4.135 21 H 0.078 0.922 22 H 0.008 0.992 23 H 0.007 0.993 24 H 0.243 0.757 25 H 0.255 0.745 26 H 0.149 0.851 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.130 0.870 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.130 0.870 33 H 0.101 0.899 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.954 -17.060 -1.510 20.330 hybrid contribution 0.229 1.382 0.031 1.401 sum 11.184 -15.678 -1.478 19.315 Atomic orbital electron populations 1.70138 1.08273 1.28587 1.49872 1.26055 0.95776 1.03866 0.93821 0.85086 0.79069 0.77235 0.77656 1.17604 1.20483 1.20493 1.21618 0.94385 0.90318 1.52998 0.89664 1.18511 0.88086 0.83129 0.94368 1.45333 1.11282 1.03584 1.76584 1.16318 0.85046 0.81739 0.77992 1.90862 1.16399 1.84783 1.59608 1.42661 1.09738 1.03899 1.75238 1.20623 0.99113 0.81439 1.00527 1.21596 0.95684 0.94588 1.09535 1.21256 0.92634 1.00423 1.00439 1.22682 1.01308 0.81407 0.95748 1.87831 1.23704 1.28583 1.91809 1.22749 0.80703 1.01041 0.96921 1.21160 1.01369 0.90836 1.00115 0.92184 0.99221 0.99255 0.75679 0.74495 0.85111 0.89705 0.90357 0.87020 0.93256 0.93111 0.86972 0.89874 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.60 13.29 21.45 0.28 -55.31 16 2 C 0.00 0.25 5.46 84.66 0.46 0.71 16 3 Si 0.99 41.70 29.54 68.60 2.03 43.73 16 4 H -0.25 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.28 -11.62 7.11 99.48 0.71 -10.92 16 6 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.56 -29.77 9.28 25.60 0.24 -29.53 16 8 H 0.09 4.10 7.60 -2.91 -0.02 4.08 16 9 C 0.28 15.41 5.43 85.63 0.46 15.87 16 10 N -0.71 -30.17 5.55 -482.30 -2.68 -32.85 16 11 C 0.69 28.48 8.53 179.05 1.53 30.01 16 12 O -0.64 -32.53 15.95 -3.97 -0.06 -32.59 16 13 N -0.67 -19.66 5.23 -324.21 -1.70 -21.36 16 14 C 0.10 2.68 9.83 82.67 0.81 3.49 16 15 C -0.21 -4.42 5.46 -16.77 -0.09 -4.51 16 16 C -0.11 -1.90 5.99 30.23 0.18 -1.72 16 17 C 0.07 1.08 6.85 72.11 0.49 1.57 16 18 O -0.40 -7.83 10.68 -148.98 -1.59 -9.42 16 19 C 0.06 1.02 6.85 72.10 0.49 1.51 16 20 C -0.10 -1.70 6.25 30.23 0.19 -1.51 16 21 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 22 H -0.01 -0.63 8.14 -2.39 -0.02 -0.64 16 23 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 24 H 0.41 13.89 8.34 -92.71 -0.77 13.12 16 25 H 0.42 9.23 6.52 -92.71 -0.60 8.62 16 26 H 0.13 4.04 7.35 -2.91 -0.02 4.02 16 27 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.08 1.22 6.07 -2.39 -0.01 1.20 16 29 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 0.83 8.13 -2.39 -0.02 0.81 16 31 H 0.05 0.83 8.13 -2.38 -0.02 0.81 16 32 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.08 1.37 7.95 -2.39 -0.02 1.35 16 34 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 Total: -1.00 -71.28 288.72 0.79 -70.49 By element: Atomic # 1 Polarization: 21.67 SS G_CDS: -0.26 Total: 21.42 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 4.77 Total: 15.89 kcal Atomic # 7 Polarization: -105.43 SS G_CDS: -4.09 Total: -109.52 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -1.66 Total: -42.01 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -71.28 0.79 -70.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218752229.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.217 kcal (2) G-P(sol) polarization free energy of solvation -71.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds