Wall clock time and date at job start Mon Mar 30 2020 03:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.52997 * 109.46817 * 240.00194 * 2 1 3 5 5 C 1.50705 * 109.47390 * 184.99865 * 4 2 1 6 6 N 1.29952 * 126.28450 * 90.02239 * 5 4 2 7 7 O 1.21296 * 110.24822 * 179.97438 * 6 5 4 8 8 C 1.33647 * 109.81321 * 0.02562 * 7 6 5 9 9 C 1.50700 * 126.55001 * 179.97438 * 8 7 6 10 10 C 1.53003 * 109.47141 * 269.97242 * 9 8 7 11 11 H 1.09003 * 109.46781 * 55.00081 * 10 9 8 12 12 O 1.42899 * 109.47240 * 295.00544 * 10 9 8 13 13 C 1.50695 * 109.47129 * 175.00048 * 10 9 8 14 14 H 1.08004 * 120.00310 * 0.02562 * 13 10 9 15 15 C 1.37879 * 120.00320 * 180.02562 * 13 10 9 16 16 N 1.31507 * 120.00516 * 180.02562 * 15 13 10 17 17 Si 1.86804 * 119.99581 * 0.02562 * 15 13 10 18 18 H 1.48497 * 109.47407 * 90.00109 * 17 15 13 19 19 H 1.48502 * 109.46799 * 210.00037 * 17 15 13 20 20 H 1.48502 * 109.47270 * 329.99641 * 17 15 13 21 21 N 1.31125 * 106.89480 * 359.76812 * 8 7 6 22 22 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 23 23 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 25 25 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 26 26 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 27 27 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 28 28 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 29 29 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 30 30 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 31 31 H 1.08995 * 109.47179 * 29.97495 * 9 8 7 32 32 H 1.08996 * 109.47105 * 149.97350 * 9 8 7 33 33 H 0.96705 * 113.99764 * 299.99499 * 12 10 9 34 34 H 0.97004 * 120.00326 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5419 -0.8294 -1.1891 6 7 4.2223 -1.8038 -0.6633 7 8 5.4116 -1.5937 -0.7755 8 6 5.6089 -0.4298 -1.4021 9 6 6.9388 0.1951 -1.7369 10 6 7.3869 1.0910 -0.5804 11 1 7.3987 0.5129 0.3436 12 8 6.4780 2.1855 -0.4459 13 6 8.7705 1.6185 -0.8606 14 1 9.2792 1.3426 -1.7725 15 6 9.3870 2.4532 0.0472 16 7 10.5942 2.9139 -0.1975 17 14 8.5075 2.9298 1.6248 18 1 8.8295 1.9445 2.6881 19 1 8.9526 4.2809 2.0508 20 1 7.0413 2.9429 1.3896 21 7 4.4243 0.0624 -1.6737 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 0.8900 26 1 3.1301 1.4425 0.0005 27 1 1.6768 1.9563 -0.8899 28 1 1.6768 1.9562 0.8901 29 1 1.6053 -1.7198 -1.2953 30 1 1.7516 -0.1582 -2.1370 31 1 7.6787 -0.5891 -1.8968 32 1 6.8414 0.7929 -2.6430 33 1 6.4164 2.7445 -1.2326 34 1 11.0278 3.5015 0.4410 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000232626843.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:11 Heat of formation + Delta-G solvation = -25.510196 kcal Electronic energy + Delta-G solvation = -17397.755996 eV Core-core repulsion = 14525.595439 eV Total energy + Delta-G solvation = -2872.160558 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -46.50684 -38.43059 -38.14111 -36.03246 -34.42779 -34.13715 -31.31272 -29.01572 -28.09331 -27.90876 -24.62354 -23.49356 -22.28162 -20.92734 -19.53901 -19.00340 -18.26933 -16.86947 -16.48529 -16.23280 -16.10059 -15.66521 -15.13694 -14.92501 -14.70890 -14.03982 -13.69869 -13.41524 -13.15453 -13.02262 -12.88635 -12.77381 -12.65998 -12.44468 -12.22323 -12.02795 -11.91171 -11.73751 -11.63321 -11.16837 -10.90502 -10.78005 -10.18898 -8.34962 -6.49438 0.18467 1.29951 1.38839 1.45826 1.74010 1.90034 2.42758 2.73764 3.03431 3.11216 3.82984 3.87189 3.94961 4.05194 4.23060 4.25641 4.39782 4.54975 4.67085 4.69839 4.80721 4.86240 4.95402 4.98222 5.05292 5.09379 5.22760 5.36571 5.39907 5.42690 5.43473 6.08220 6.63792 7.17383 7.21415 7.33445 8.78295 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.031983 B = 0.006442 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.263374 B = 4345.657092 C = 4880.188334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 C -0.146 4.146 4 C -0.023 4.023 5 C 0.171 3.829 6 N -0.415 5.415 7 O 0.053 5.947 8 C 0.205 3.795 9 C -0.040 4.040 10 C 0.208 3.792 11 H 0.050 0.950 12 O -0.581 6.581 13 C -0.559 4.559 14 H 0.057 0.943 15 C 0.039 3.961 16 N -0.933 5.933 17 Si 0.926 3.074 18 H -0.289 1.289 19 H -0.297 1.297 20 H -0.211 1.211 21 N -0.488 5.488 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.029 0.971 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.105 0.895 30 H 0.108 0.892 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.373 0.627 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.366 -5.695 -1.958 19.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 C -0.203 4.203 4 C -0.061 4.061 5 C -0.102 4.102 6 N -0.129 5.129 7 O 0.000 6.000 8 C -0.015 4.015 9 C -0.079 4.079 10 C 0.149 3.851 11 H 0.068 0.932 12 O -0.388 6.388 13 C -0.597 4.597 14 H 0.075 0.925 15 C -0.162 4.162 16 N -0.571 5.571 17 Si 0.751 3.249 18 H -0.215 1.215 19 H -0.224 1.224 20 H -0.133 1.133 21 N -0.222 5.222 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.082 0.918 25 H 0.073 0.927 26 H 0.049 0.951 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.123 0.877 30 H 0.126 0.874 31 H 0.136 0.864 32 H 0.138 0.862 33 H 0.221 0.779 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.969 -6.268 -1.125 20.009 hybrid contribution 0.916 0.562 0.248 1.103 sum -18.052 -5.705 -0.877 18.953 Atomic orbital electron populations 1.21766 0.91814 1.02866 1.03014 1.21067 0.97894 0.95785 0.95973 1.21832 1.00065 0.96068 1.02329 1.20297 0.80873 1.03799 1.01146 1.26477 1.01433 0.86819 0.95427 1.74543 0.89489 1.25091 1.23760 1.85240 1.20446 1.36347 1.57957 1.29243 0.98656 0.83376 0.90254 1.21040 0.85053 0.99955 1.01826 1.19518 0.87092 0.84977 0.93486 0.93214 1.86649 1.66019 1.43025 1.43140 1.21673 1.00612 1.30450 1.06963 0.92525 1.25651 0.94627 0.94737 1.01208 1.70036 1.15275 1.33944 1.37892 0.86178 0.83313 0.76545 0.78872 1.21530 1.22412 1.13288 1.71933 0.98463 1.27795 1.24046 0.91179 0.91407 0.91816 0.92723 0.95148 0.91441 0.92258 0.87688 0.87383 0.86437 0.86169 0.77879 0.92361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.19 71.98 0.66 -1.28 16 2 C -0.09 -1.82 2.91 -10.79 -0.03 -1.86 16 3 C -0.15 -3.52 9.01 71.98 0.65 -2.87 16 4 C -0.02 -0.49 5.32 29.85 0.16 -0.33 16 5 C 0.17 5.31 6.66 138.46 0.92 6.23 16 6 N -0.42 -14.20 12.16 -60.32 -0.73 -14.93 16 7 O 0.05 1.87 11.31 74.81 0.85 2.71 16 8 C 0.20 7.05 7.54 88.38 0.67 7.71 16 9 C -0.04 -1.34 5.46 29.85 0.16 -1.18 16 10 C 0.21 8.83 2.30 29.85 0.07 8.90 16 11 H 0.05 2.23 7.57 -2.39 -0.02 2.21 16 12 O -0.58 -24.27 9.90 -148.98 -1.48 -25.75 16 13 C -0.56 -28.78 9.34 25.60 0.24 -28.54 16 14 H 0.06 3.11 7.99 -2.91 -0.02 3.09 16 15 C 0.04 2.12 5.47 84.66 0.46 2.59 16 16 N -0.93 -55.43 13.96 21.45 0.30 -55.13 16 17 Si 0.93 43.92 26.99 68.60 1.85 45.77 16 18 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 19 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 20 H -0.21 -9.68 5.31 99.48 0.53 -9.16 16 21 N -0.49 -16.53 10.89 -303.20 -3.30 -19.83 16 22 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 23 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 25 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.03 0.95 6.85 -2.39 -0.02 0.93 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.12 3.63 8.14 -2.39 -0.02 3.61 16 32 H 0.12 3.73 8.14 -2.39 -0.02 3.71 16 33 H 0.37 13.66 9.04 -74.05 -0.67 12.99 16 34 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -63.87 289.10 1.69 -62.17 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.25 Total: 15.62 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 3.96 Total: -10.63 kcal Atomic # 7 Polarization: -86.16 SS G_CDS: -3.74 Total: -89.90 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.63 Total: -23.04 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.85 Total: 45.77 kcal Total: -63.87 1.69 -62.17 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232626843.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.663 kcal (2) G-P(sol) polarization free energy of solvation -63.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds