Wall clock time and date at job start Mon Mar 30 2020 03:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47226 * 2 1 4 4 C 1.53004 * 115.56021 * 279.67877 * 3 2 1 5 5 N 1.46501 * 109.46631 * 319.75950 * 4 3 2 6 6 C 1.34778 * 119.99326 * 173.94887 * 5 4 3 7 7 O 1.21440 * 120.00359 * 359.97438 * 6 5 4 8 8 C 1.48838 * 119.99554 * 179.97438 * 6 5 4 9 9 O 1.21497 * 119.99913 * 0.02562 * 8 6 5 10 10 N 1.34771 * 119.99810 * 179.97438 * 8 6 5 11 11 C 1.36124 * 120.00116 * 180.02562 * 10 8 6 12 12 H 1.07999 * 119.99343 * 0.02562 * 11 10 8 13 13 C 1.39582 * 120.00274 * 179.97438 * 11 10 8 14 14 N 1.31010 * 120.00096 * 179.97438 * 13 11 10 15 15 Si 1.86809 * 119.99880 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47166 * 89.99791 * 15 13 11 17 17 H 1.48502 * 109.46718 * 210.00053 * 15 13 11 18 18 H 1.48494 * 109.46774 * 329.99480 * 15 13 11 19 19 C 1.52998 * 117.50324 * 133.98172 * 3 2 1 20 20 C 1.52994 * 60.00281 * 252.51375 * 19 3 2 21 21 H 1.09000 * 109.47095 * 179.47893 * 1 2 3 22 22 H 1.09002 * 109.47622 * 299.48034 * 1 2 3 23 23 H 1.09000 * 109.47442 * 59.48296 * 1 2 3 24 24 H 1.08993 * 109.47622 * 239.99756 * 2 1 3 25 25 H 1.09005 * 109.47087 * 119.99542 * 2 1 3 26 26 H 1.09001 * 109.47195 * 79.75694 * 4 3 2 27 27 H 1.08996 * 109.46646 * 199.76063 * 4 3 2 28 28 H 0.96996 * 120.00409 * 353.94180 * 5 4 3 29 29 H 0.97004 * 120.00168 * 0.02562 * 10 8 6 30 30 H 0.97004 * 119.99790 * 180.02562 * 14 13 11 31 31 H 1.08997 * 117.49442 * 0.02562 * 19 3 2 32 32 H 1.08999 * 117.49883 * 145.01701 * 19 3 2 33 33 H 1.09005 * 117.49958 * 252.50832 * 20 19 3 34 34 H 1.09000 * 117.49766 * 107.48933 * 20 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0413 2.1423 -1.3607 5 7 2.4818 1.2011 -2.3933 6 6 2.4454 1.5600 -3.6919 7 8 2.0470 2.6634 -4.0060 8 6 2.8934 0.6041 -4.7410 9 8 3.2915 -0.5000 -4.4267 10 7 2.8566 0.9628 -6.0395 11 6 3.2659 0.0883 -6.9991 12 1 3.6197 -0.8931 -6.7197 13 6 3.2272 0.4596 -8.3441 14 7 3.6216 -0.3819 -9.2675 15 14 2.6144 2.1569 -8.8272 16 1 3.7561 3.1060 -8.8548 17 1 1.9908 2.0933 -10.1735 18 1 1.6091 2.6204 -7.8375 19 6 3.1640 1.7945 0.9765 20 6 1.7421 2.2972 1.2336 21 1 -0.3633 -1.0276 -0.0093 22 1 -0.3634 0.5057 0.8946 23 1 -0.3634 0.5218 -0.8853 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 1.0343 2.4898 -1.5915 27 1 2.7215 2.9934 -1.3307 28 1 2.7997 0.3197 -2.1424 29 1 2.5384 1.8441 -6.2904 30 1 3.5950 -0.1236 -10.2022 31 1 3.5404 0.9983 1.6186 32 1 3.9045 2.5245 0.6495 33 1 1.5470 3.3580 1.0759 34 1 1.1828 1.8317 2.0452 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000232894079.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:05 Heat of formation + Delta-G solvation = -53.187441 kcal Electronic energy + Delta-G solvation = -17014.538828 eV Core-core repulsion = 14141.178095 eV Total energy + Delta-G solvation = -2873.360733 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.85548 -38.62325 -37.20061 -34.58749 -33.58742 -31.91320 -31.82996 -27.60301 -25.60606 -24.10039 -22.58034 -22.19587 -19.54480 -19.18989 -18.75684 -17.02919 -16.05150 -15.70737 -15.36574 -15.00492 -14.57186 -14.17935 -13.74313 -13.46586 -13.34838 -12.96828 -12.80108 -12.41006 -12.36814 -12.19620 -11.68538 -11.27914 -11.27428 -10.87478 -10.72376 -10.56278 -10.39288 -10.09768 -9.92654 -9.76618 -8.81336 -8.41819 -8.40991 -6.58279 -3.99859 2.30801 3.04823 3.07979 3.10985 3.21639 3.64638 3.96250 4.16181 4.45016 4.59302 4.70974 4.74648 4.82203 5.13052 5.26332 5.37133 5.42575 5.46062 5.59313 5.69555 5.71121 5.80083 5.89391 5.94794 6.00829 6.07492 6.22188 6.68331 7.26829 7.67461 7.92718 8.25371 8.52083 8.75277 9.19968 9.62140 10.51827 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.043411 B = 0.005103 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.846801 B = 5485.881306 C = 5725.508942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.090 4.090 3 C -0.140 4.140 4 C 0.159 3.841 5 N -0.708 5.708 6 C 0.513 3.487 7 O -0.552 6.552 8 C 0.405 3.595 9 O -0.579 6.579 10 N -0.527 5.527 11 C -0.309 4.309 12 H 0.127 0.873 13 C 0.053 3.947 14 N -0.850 5.850 15 Si 0.876 3.124 16 H -0.264 1.264 17 H -0.271 1.271 18 H -0.260 1.260 19 C -0.171 4.171 20 C -0.164 4.164 21 H 0.055 0.945 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.411 0.589 29 H 0.384 0.616 30 H 0.281 0.719 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.294 5.024 17.066 18.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 C -0.140 4.140 4 C 0.035 3.965 5 N -0.363 5.363 6 C 0.297 3.703 7 O -0.430 6.430 8 C 0.189 3.811 9 O -0.465 6.465 10 N -0.164 5.164 11 C -0.438 4.438 12 H 0.145 0.855 13 C -0.155 4.155 14 N -0.487 5.487 15 Si 0.700 3.300 16 H -0.189 1.189 17 H -0.195 1.195 18 H -0.184 1.184 19 C -0.208 4.208 20 C -0.202 4.202 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.249 0.751 29 H 0.218 0.782 30 H 0.092 0.908 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.282 5.041 16.815 18.069 hybrid contribution -0.271 0.882 -0.407 1.008 sum -4.553 5.923 16.408 18.029 Atomic orbital electron populations 1.21710 0.95236 1.01622 1.01944 1.21092 0.96281 0.92867 1.02534 1.21709 1.04365 0.96884 0.91055 1.20769 1.00445 0.91197 0.84099 1.45721 1.66185 1.19253 1.05185 1.20635 0.78143 0.87555 0.83984 1.90674 1.47218 1.22713 1.82372 1.18837 0.90250 0.88688 0.83291 1.90617 1.52888 1.22147 1.80888 1.41827 1.53331 1.15839 1.05427 1.19562 1.40020 0.99174 0.85085 0.85502 1.25225 0.96468 0.98547 0.95292 1.69441 1.42387 1.35370 1.01499 0.86680 0.80261 0.83453 0.79587 1.18894 1.19530 1.18436 1.23178 0.91726 1.03564 1.02357 1.22963 0.98987 0.99744 0.98489 0.92632 0.92846 0.92448 0.90791 0.91606 0.90880 0.91610 0.75054 0.78156 0.90790 0.88604 0.88579 0.88600 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.79 37.16 0.36 -1.09 16 2 C -0.09 -0.92 5.72 -26.73 -0.15 -1.08 16 3 C -0.14 -1.45 1.85 -154.50 -0.29 -1.74 16 4 C 0.16 2.12 5.76 -4.04 -0.02 2.09 16 5 N -0.71 -11.73 5.21 -60.93 -0.32 -12.05 16 6 C 0.51 10.72 7.87 -11.87 -0.09 10.62 16 7 O -0.55 -12.28 16.45 5.42 0.09 -12.19 16 8 C 0.40 9.91 7.82 -11.87 -0.09 9.82 16 9 O -0.58 -15.38 16.03 5.37 0.09 -15.29 16 10 N -0.53 -13.46 5.06 -11.59 -0.06 -13.52 16 11 C -0.31 -8.68 10.16 -15.15 -0.15 -8.83 16 12 H 0.13 3.96 7.36 -52.49 -0.39 3.58 16 13 C 0.05 1.42 5.51 -17.40 -0.10 1.32 16 14 N -0.85 -23.73 13.94 55.53 0.77 -22.95 16 15 Si 0.88 19.46 27.74 -169.99 -4.72 14.75 16 16 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 17 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 18 H -0.26 -5.61 6.53 56.52 0.37 -5.24 16 19 C -0.17 -1.55 9.82 -26.74 -0.26 -1.81 16 20 C -0.16 -1.39 9.55 -26.73 -0.26 -1.64 16 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.05 0.46 7.68 -51.93 -0.40 0.06 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.07 0.87 6.01 -51.93 -0.31 0.55 16 25 H 0.07 0.59 7.95 -51.93 -0.41 0.17 16 26 H 0.07 1.01 8.12 -51.93 -0.42 0.59 16 27 H 0.07 0.88 7.95 -51.93 -0.41 0.46 16 28 H 0.41 6.55 6.06 -40.82 -0.25 6.31 16 29 H 0.38 9.22 5.22 -40.82 -0.21 9.00 16 30 H 0.28 7.17 8.30 -40.82 -0.34 6.83 16 31 H 0.10 0.78 8.08 -51.93 -0.42 0.36 16 32 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 33 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.10 0.72 7.96 -51.93 -0.41 0.30 16 LS Contribution 292.22 15.07 4.40 4.40 Total: -1.00 -30.62 292.22 -5.28 -35.90 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -4.49 Total: 13.28 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: -1.05 Total: 7.68 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.40 Total: -48.52 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: 0.18 Total: -27.49 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -4.72 Total: 14.75 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.62 -5.28 -35.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000232894079.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.287 kcal (2) G-P(sol) polarization free energy of solvation -30.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds