Wall clock time and date at job start Mon Mar 30 2020 03:33:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47079 * 2 1 4 4 C 1.52997 * 109.47079 * 180.02562 * 3 2 1 5 5 H 1.09001 * 115.55272 * 330.67455 * 4 3 2 6 6 C 1.52999 * 117.51669 * 116.37278 * 4 3 2 7 7 C 1.52999 * 60.00178 * 107.48148 * 6 4 3 8 8 H 1.08998 * 117.52005 * 252.52299 * 7 6 4 9 9 N 1.46498 * 117.49839 * 107.48663 * 7 6 4 10 10 C 1.34775 * 119.99689 * 136.37820 * 9 7 6 11 11 O 1.21433 * 120.00517 * 0.02562 * 10 9 7 12 12 C 1.48835 * 119.99729 * 180.02562 * 10 9 7 13 13 O 1.21503 * 120.00181 * 0.02562 * 12 10 9 14 14 N 1.34777 * 119.99868 * 179.72512 * 12 10 9 15 15 C 1.36121 * 119.99923 * 180.27524 * 14 12 10 16 16 H 1.07991 * 119.99837 * 0.02562 * 15 14 12 17 17 C 1.39584 * 119.99922 * 180.02562 * 15 14 12 18 18 N 1.31024 * 119.99863 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 120.00239 * 179.97438 * 17 15 14 20 20 H 1.48508 * 109.46744 * 90.00002 * 19 17 15 21 21 H 1.48501 * 109.47447 * 210.00002 * 19 17 15 22 22 H 1.48499 * 109.46902 * 330.00342 * 19 17 15 23 23 H 1.08996 * 109.47190 * 179.97438 * 1 2 3 24 24 H 1.09009 * 109.46890 * 299.99543 * 1 2 3 25 25 H 1.08998 * 109.47516 * 59.99909 * 1 2 3 26 26 H 1.09004 * 109.46679 * 240.00884 * 2 1 3 27 27 H 1.08998 * 109.47516 * 120.00091 * 2 1 3 28 28 H 1.09000 * 109.46340 * 60.00483 * 3 2 1 29 29 H 1.08998 * 109.47021 * 300.00395 * 3 2 1 30 30 H 1.09010 * 117.49887 * 359.97438 * 6 4 3 31 31 H 1.08997 * 117.50325 * 214.97100 * 6 4 3 32 32 H 0.97001 * 120.00384 * 316.38779 * 9 7 6 33 33 H 0.97001 * 119.99727 * 0.28258 * 14 12 10 34 34 H 0.97000 * 119.99293 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 4.0403 0.5851 0.4807 6 6 4.2763 2.0455 -1.2165 7 6 4.2765 2.7946 0.1175 8 1 3.6512 3.6839 0.1958 9 7 5.5333 2.8375 0.8690 10 6 5.9389 3.9898 1.4383 11 8 5.2624 4.9923 1.3289 12 6 7.2160 4.0336 2.2013 13 8 7.8932 3.0307 2.3105 14 7 7.6244 5.1872 2.7660 15 6 8.7953 5.2286 3.4590 16 1 9.3971 4.3372 3.5561 17 6 9.2180 6.4233 4.0443 18 7 8.4880 7.5049 3.9261 19 14 10.8243 6.4800 4.9960 20 1 11.9343 6.8286 4.0731 21 1 10.7298 7.5053 6.0661 22 1 11.0859 5.1513 5.6052 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 1.8932 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.6766 1.9562 0.8901 29 1 1.6766 1.9564 -0.8899 30 1 3.6509 2.4420 -2.0166 31 1 5.2113 1.5848 -1.5352 32 1 6.0736 2.0367 0.9567 33 1 7.0839 5.9879 2.6786 34 1 8.7820 8.3351 4.3326 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233376147.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:27 Heat of formation + Delta-G solvation = -89.570794 kcal Electronic energy + Delta-G solvation = -16428.148216 eV Core-core repulsion = 13553.209782 eV Total energy + Delta-G solvation = -2874.938434 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.36579 -39.57391 -38.53403 -36.41570 -35.36346 -33.68263 -33.23067 -28.34033 -27.77805 -25.28142 -22.95492 -22.26504 -21.75832 -21.04491 -20.36979 -18.74231 -17.85632 -17.04007 -16.52054 -16.38413 -15.95925 -15.77794 -15.27748 -14.83976 -14.65238 -14.19823 -13.83912 -13.67877 -13.25577 -12.97953 -12.95426 -12.59265 -12.39068 -12.30737 -12.10540 -11.97813 -11.78874 -11.68060 -11.64834 -10.98529 -10.29668 -10.27087 -9.75770 -8.67737 -6.12794 0.54621 1.40516 1.46513 1.55192 1.74815 2.27768 2.30565 2.87768 3.14702 3.20356 3.64999 3.81733 3.98820 4.01481 4.21098 4.30792 4.39293 4.64051 4.77425 4.89313 4.92664 4.98457 5.06140 5.20372 5.23672 5.34250 5.39086 5.43685 5.52738 5.66278 6.13722 6.36204 6.79119 6.99167 7.25275 7.77194 8.48117 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.057609 B = 0.003860 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.917871 B = 7251.340218 C = 7340.573871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.088 4.088 4 C -0.138 4.138 5 H 0.113 0.887 6 C -0.169 4.169 7 C 0.047 3.953 8 H 0.123 0.877 9 N -0.667 5.667 10 C 0.522 3.478 11 O -0.566 6.566 12 C 0.389 3.611 13 O -0.617 6.617 14 N -0.509 5.509 15 C -0.346 4.346 16 H 0.100 0.900 17 C -0.005 4.005 18 N -0.895 5.895 19 Si 1.011 2.989 20 H -0.264 1.264 21 H -0.266 1.266 22 H -0.263 1.263 23 H 0.060 0.940 24 H 0.050 0.950 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.416 0.584 33 H 0.401 0.599 34 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.083 -10.744 -7.645 17.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.126 4.126 4 C -0.158 4.158 5 H 0.131 0.869 6 C -0.207 4.207 7 C -0.058 4.058 8 H 0.141 0.859 9 N -0.317 5.317 10 C 0.305 3.695 11 O -0.446 6.446 12 C 0.174 3.826 13 O -0.507 6.507 14 N -0.143 5.143 15 C -0.476 4.476 16 H 0.117 0.883 17 C -0.209 4.209 18 N -0.533 5.533 19 Si 0.832 3.168 20 H -0.189 1.189 21 H -0.191 1.191 22 H -0.187 1.187 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.138 0.862 31 H 0.121 0.879 32 H 0.253 0.747 33 H 0.236 0.764 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.135 -10.465 -7.588 17.061 hybrid contribution 0.674 0.383 0.472 0.908 sum -10.461 -10.082 -7.116 16.178 Atomic orbital electron populations 1.21783 0.95352 1.02042 1.01917 1.21484 0.96143 0.95676 1.02352 1.21239 0.90712 0.98106 1.02502 1.22970 0.96142 0.95151 1.01496 0.86874 1.23719 1.03204 1.02266 0.91486 1.21939 0.87518 0.98549 0.97814 0.85911 1.44992 1.23235 1.11627 1.51843 1.20072 0.85957 0.83872 0.79582 1.90664 1.57043 1.35093 1.61762 1.19547 0.89079 0.85112 0.88890 1.90544 1.58550 1.34594 1.67047 1.41659 1.20179 1.10222 1.42201 1.19999 0.98814 0.98336 1.30404 0.88258 1.26576 1.03382 0.93459 0.97508 1.69557 1.39780 1.01606 1.42319 0.84677 0.75657 0.78876 0.77597 1.18891 1.19054 1.18737 0.92114 0.93051 0.92332 0.91213 0.92207 0.92102 0.90622 0.86167 0.87856 0.74673 0.76447 0.90021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 71.98 0.71 -1.22 16 2 C -0.12 -1.67 5.89 30.60 0.18 -1.49 16 3 C -0.09 -1.46 5.50 30.60 0.17 -1.30 16 4 C -0.14 -2.73 5.66 -10.79 -0.06 -2.79 16 5 H 0.11 2.15 8.07 -2.39 -0.02 2.13 16 6 C -0.17 -3.33 10.10 30.59 0.31 -3.02 16 7 C 0.05 1.28 6.15 44.99 0.28 1.56 16 8 H 0.12 3.73 7.40 -2.39 -0.02 3.71 16 9 N -0.67 -23.15 5.56 -444.46 -2.47 -25.62 16 10 C 0.52 23.38 7.87 87.08 0.69 24.06 16 11 O -0.57 -27.37 16.03 -3.51 -0.06 -27.43 16 12 C 0.39 20.27 7.82 87.08 0.68 20.95 16 13 O -0.62 -33.94 16.03 -3.73 -0.06 -34.00 16 14 N -0.51 -28.30 5.25 -308.87 -1.62 -29.92 16 15 C -0.35 -19.60 9.67 84.35 0.82 -18.78 16 16 H 0.10 5.77 7.15 -2.91 -0.02 5.75 16 17 C 0.00 -0.25 5.51 85.14 0.47 0.22 16 18 N -0.90 -48.31 13.03 21.77 0.28 -48.03 16 19 Si 1.01 40.78 29.56 68.60 2.03 42.81 16 20 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 21 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 23 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 24 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 25 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.12 7.88 -2.39 -0.02 1.10 16 30 H 0.12 1.94 8.03 -2.38 -0.02 1.92 16 31 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.42 13.49 8.29 -92.71 -0.77 12.72 16 33 H 0.40 22.53 7.35 -92.71 -0.68 21.84 16 34 H 0.29 14.27 8.30 -92.71 -0.77 13.50 16 Total: -1.00 -65.25 300.32 2.01 -63.24 By element: Atomic # 1 Polarization: 41.07 SS G_CDS: -0.33 Total: 40.74 kcal Atomic # 6 Polarization: 13.97 SS G_CDS: 4.24 Total: 18.21 kcal Atomic # 7 Polarization: -99.77 SS G_CDS: -3.81 Total: -103.57 kcal Atomic # 8 Polarization: -61.31 SS G_CDS: -0.12 Total: -61.42 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -65.25 2.01 -63.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233376147.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.330 kcal (2) G-P(sol) polarization free energy of solvation -65.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds