Wall clock time and date at job start Mon Mar 30 2020 03:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47200 * 2 1 4 4 H 1.08994 * 109.47195 * 304.99942 * 3 2 1 5 5 C 1.53000 * 109.47129 * 65.00213 * 3 2 1 6 6 C 1.50700 * 109.46981 * 185.00085 * 3 2 1 7 7 N 1.29946 * 126.28978 * 299.97128 * 6 3 2 8 8 O 1.21299 * 110.25599 * 179.97438 * 7 6 3 9 9 C 1.33642 * 109.81016 * 0.02562 * 8 7 6 10 10 C 1.50698 * 126.55318 * 179.97438 * 9 8 7 11 11 C 1.53004 * 109.46815 * 270.01918 * 10 9 8 12 12 H 1.08992 * 109.47264 * 55.00097 * 11 10 9 13 13 O 1.42901 * 109.46736 * 294.99483 * 11 10 9 14 14 C 1.50699 * 109.46847 * 174.99923 * 11 10 9 15 15 H 1.08002 * 120.00511 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99783 * 179.97438 * 14 11 10 17 17 N 1.31514 * 119.99573 * 180.27665 * 16 14 11 18 18 Si 1.86800 * 119.99781 * 359.97438 * 16 14 11 19 19 H 1.48501 * 109.46758 * 89.99934 * 18 16 14 20 20 H 1.48499 * 109.47026 * 209.99782 * 18 16 14 21 21 H 1.48496 * 109.47474 * 329.99818 * 18 16 14 22 22 N 1.31134 * 106.89595 * 0.21731 * 9 8 7 23 23 H 1.09003 * 109.47205 * 300.00052 * 1 2 3 24 24 H 1.09001 * 109.47159 * 60.00285 * 1 2 3 25 25 H 1.08999 * 109.47426 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47205 * 239.99948 * 2 1 3 27 27 H 1.09002 * 109.46947 * 120.00469 * 2 1 3 28 28 H 1.08999 * 109.47061 * 179.97438 * 5 3 2 29 29 H 1.08996 * 109.47124 * 299.99754 * 5 3 2 30 30 H 1.09004 * 109.47274 * 59.99881 * 5 3 2 31 31 H 1.08997 * 109.47275 * 150.01410 * 10 9 8 32 32 H 1.08998 * 109.47248 * 30.01782 * 10 9 8 33 33 H 0.96700 * 114.00539 * 300.00505 * 13 11 10 34 34 H 0.97004 * 119.99485 * 179.72881 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3074 6 6 3.5419 1.4442 -0.1239 7 7 4.3823 0.8957 0.7016 8 8 5.5205 1.0724 0.3213 9 6 5.5141 1.7721 -0.8173 10 6 6.7193 2.2015 -1.6136 11 6 7.1882 3.5747 -1.1283 12 1 7.3676 3.5386 -0.0539 13 8 6.1817 4.5489 -1.4109 14 6 8.4636 3.9496 -1.8382 15 1 8.8962 3.2762 -2.5633 16 6 9.0777 5.1531 -1.5628 17 7 10.1877 5.4827 -2.1863 18 14 8.3283 6.3189 -0.3103 19 1 8.8743 6.0155 1.0369 20 1 8.6618 7.7190 -0.6758 21 1 6.8531 6.1490 -0.2964 22 7 4.2589 2.0181 -1.1064 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.9990 3.1540 1.3076 29 1 0.5490 2.1252 1.3970 30 1 2.0699 1.5874 2.1492 31 1 6.4552 2.2599 -2.6695 32 1 7.5211 1.4754 -1.4793 33 1 5.9705 4.6352 -2.3506 34 1 10.6176 6.3310 -1.9954 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233983470.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:23 Heat of formation + Delta-G solvation = -2.818815 kcal Electronic energy + Delta-G solvation = -17220.010959 eV Core-core repulsion = 14348.834373 eV Total energy + Delta-G solvation = -2871.176586 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.16312 -37.20498 -36.70710 -34.69981 -32.55427 -32.34359 -29.97747 -29.31913 -26.13824 -25.58478 -23.27797 -22.51778 -21.02631 -19.64288 -17.73293 -17.58439 -16.90752 -15.27493 -15.03979 -14.90661 -14.65466 -14.43600 -13.85482 -13.62557 -12.97077 -12.85134 -12.48522 -12.31974 -11.92774 -11.77333 -11.52023 -11.33390 -11.29027 -11.06154 -10.93576 -10.80306 -10.57807 -10.45724 -10.26768 -9.49848 -9.16066 -8.71641 -8.40429 -6.21924 -4.35569 1.55916 2.61740 3.27965 3.35014 3.45077 3.70802 3.83772 4.32738 4.46721 4.75996 4.80575 4.94656 5.11747 5.19021 5.29231 5.37939 5.49655 5.64369 5.67742 5.75340 5.80765 5.82652 5.86616 5.94048 6.10156 6.14206 6.16967 6.36527 6.44731 7.10372 7.40571 8.17158 8.56189 8.71000 8.91878 9.41106 10.87952 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.045770 B = 0.005425 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.612108 B = 5159.996229 C = 5408.912248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C 0.003 3.997 4 H 0.099 0.901 5 C -0.146 4.146 6 C 0.169 3.831 7 N -0.396 5.396 8 O 0.065 5.935 9 C 0.209 3.791 10 C -0.051 4.051 11 C 0.202 3.798 12 H 0.060 0.940 13 O -0.576 6.576 14 C -0.568 4.568 15 H 0.078 0.922 16 C 0.089 3.911 17 N -0.887 5.887 18 Si 0.868 3.132 19 H -0.286 1.286 20 H -0.294 1.294 21 H -0.218 1.218 22 N -0.484 5.484 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.361 0.639 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.601 -8.561 3.537 18.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.017 4.017 4 H 0.117 0.883 5 C -0.204 4.204 6 C -0.104 4.104 7 N -0.106 5.106 8 O 0.009 5.991 9 C -0.010 4.010 10 C -0.090 4.090 11 C 0.143 3.857 12 H 0.078 0.922 13 O -0.382 6.382 14 C -0.605 4.605 15 H 0.096 0.904 16 C -0.117 4.117 17 N -0.523 5.523 18 Si 0.694 3.306 19 H -0.212 1.212 20 H -0.220 1.220 21 H -0.140 1.140 22 N -0.218 5.218 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.208 0.792 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.030 -8.631 4.636 18.787 hybrid contribution 0.195 0.597 -0.074 0.632 sum -15.835 -8.034 4.562 18.333 Atomic orbital electron populations 1.21807 0.94943 1.01885 1.02192 1.21556 0.96284 0.94799 1.02749 1.19529 0.83599 0.98017 1.00575 0.88296 1.21874 1.01695 1.00831 0.95955 1.25737 0.99625 0.96153 0.88889 1.74489 0.89998 1.23254 1.22907 1.85264 1.24072 1.54974 1.34789 1.29301 0.96408 0.89383 0.85914 1.21276 0.88363 1.01691 0.97712 1.19771 0.87295 0.81641 0.97022 0.92235 1.86712 1.60618 1.61280 1.29565 1.21363 1.07155 1.05667 1.26331 0.90360 1.24938 0.93743 0.97721 0.95293 1.69935 1.17909 1.23118 1.41378 0.87062 0.83683 0.79205 0.80645 1.21239 1.22011 1.14030 1.71917 1.01298 1.22551 1.25994 0.92203 0.92420 0.92477 0.91800 0.91283 0.92196 0.91164 0.92001 0.87582 0.87825 0.79237 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.67 37.16 0.36 -0.85 16 2 C -0.12 -1.22 5.38 -26.73 -0.14 -1.36 16 3 C 0.00 0.04 2.86 -91.77 -0.26 -0.23 16 4 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 5 C -0.15 -1.64 8.93 37.16 0.33 -1.31 16 6 C 0.17 2.82 6.72 -156.37 -1.05 1.77 16 7 N -0.40 -7.01 12.16 30.90 0.38 -6.63 16 8 O 0.06 1.18 11.31 18.10 0.20 1.39 16 9 C 0.21 3.81 7.54 -13.06 -0.10 3.71 16 10 C -0.05 -0.91 5.46 -27.88 -0.15 -1.06 16 11 C 0.20 4.43 2.30 -27.88 -0.06 4.37 16 12 H 0.06 1.37 7.57 -51.93 -0.39 0.98 16 13 O -0.58 -12.72 9.89 -35.23 -0.35 -13.07 16 14 C -0.57 -14.75 9.34 -34.44 -0.32 -15.07 16 15 H 0.08 2.15 7.99 -52.49 -0.42 1.73 16 16 C 0.09 2.45 5.47 -17.82 -0.10 2.35 16 17 N -0.89 -26.08 13.96 55.43 0.77 -25.31 16 18 Si 0.87 21.29 26.99 -169.99 -4.59 16.70 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.22 -5.30 5.30 56.52 0.30 -5.00 16 22 N -0.48 -8.88 11.55 -9.87 -0.11 -9.00 16 23 H 0.06 0.43 6.57 -51.93 -0.34 0.09 16 24 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.61 6.56 -51.93 -0.34 0.26 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.11 1.77 8.14 -51.93 -0.42 1.34 16 32 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.36 7.03 9.04 45.56 0.41 7.44 16 34 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 288.36 15.07 4.35 4.35 Total: -1.00 -30.56 288.36 -4.98 -35.54 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -4.12 Total: 3.71 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -1.50 Total: -7.68 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 1.04 Total: -40.94 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: -0.14 Total: -11.68 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.59 Total: 16.70 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.56 -4.98 -35.54 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233983470.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.720 kcal (2) G-P(sol) polarization free energy of solvation -30.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds