Wall clock time and date at job start Mon Mar 30 2020 03:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47270 * 2 1 4 4 H 1.09000 * 109.47211 * 55.00091 * 3 2 1 5 5 C 1.52994 * 109.47158 * 294.99891 * 3 2 1 6 6 C 1.50708 * 109.47116 * 175.00125 * 3 2 1 7 7 N 1.29939 * 126.28707 * 59.97673 * 6 3 2 8 8 O 1.21301 * 110.24820 * 179.72784 * 7 6 3 9 9 C 1.33635 * 109.81228 * 0.46466 * 8 7 6 10 10 C 1.50706 * 126.55435 * 179.80380 * 9 8 7 11 11 C 1.53000 * 109.47116 * 269.68798 * 10 9 8 12 12 H 1.08998 * 109.46963 * 305.00170 * 11 10 9 13 13 O 1.42901 * 109.46999 * 64.99553 * 11 10 9 14 14 C 1.50693 * 109.47278 * 184.99778 * 11 10 9 15 15 H 1.07996 * 119.99966 * 0.02562 * 14 11 10 16 16 C 1.37876 * 120.00044 * 180.02562 * 14 11 10 17 17 N 1.31511 * 120.00047 * 0.02562 * 16 14 11 18 18 Si 1.86809 * 119.99806 * 179.97438 * 16 14 11 19 19 H 1.48495 * 109.46924 * 90.00233 * 18 16 14 20 20 H 1.48501 * 109.46818 * 210.00164 * 18 16 14 21 21 H 1.48498 * 109.46990 * 330.00188 * 18 16 14 22 22 N 1.31133 * 106.89680 * 359.54056 * 9 8 7 23 23 H 1.09002 * 109.46937 * 59.99451 * 1 2 3 24 24 H 1.08990 * 109.47133 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47004 * 300.00232 * 1 2 3 26 26 H 1.08994 * 109.47357 * 239.99776 * 2 1 3 27 27 H 1.09001 * 109.47099 * 119.99600 * 2 1 3 28 28 H 1.08996 * 109.47511 * 59.99955 * 5 3 2 29 29 H 1.08998 * 109.47665 * 179.97438 * 5 3 2 30 30 H 1.09000 * 109.47223 * 300.00193 * 5 3 2 31 31 H 1.09000 * 109.46646 * 29.68211 * 10 9 8 32 32 H 1.09000 * 109.47248 * 149.68929 * 10 9 8 33 33 H 0.96705 * 114.00192 * 60.00629 * 13 11 10 34 34 H 0.96999 * 119.99988 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5420 1.4443 0.1238 7 7 4.3823 0.8950 -0.7012 8 8 5.5207 1.0770 -0.3241 9 6 5.5141 1.7723 0.8171 10 6 6.7194 2.2020 1.6134 11 6 7.0660 1.1198 2.6379 12 1 6.1914 0.9084 3.2531 13 8 7.4677 -0.0703 1.9563 14 6 8.1929 1.6009 3.5151 15 1 8.6189 2.5808 3.3579 16 6 8.6800 0.7902 4.5183 17 7 8.1615 -0.4032 4.7094 18 14 10.0774 1.3865 5.6053 19 1 9.5191 2.0920 6.7866 20 1 10.8829 0.2240 6.0580 21 1 10.9409 2.3173 4.8352 22 7 4.2587 2.0143 1.1087 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 0.5491 2.1253 -1.3970 29 1 1.9982 3.1543 -1.3072 30 1 2.0699 1.5875 -2.1491 31 1 7.5647 2.3502 0.9414 32 1 6.4988 3.1353 2.1314 33 1 8.2423 0.0439 1.3887 34 1 8.5039 -0.9734 5.4154 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234006463.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:26 Heat of formation + Delta-G solvation = -9.052222 kcal Electronic energy + Delta-G solvation = -17133.898329 eV Core-core repulsion = 14262.451443 eV Total energy + Delta-G solvation = -2871.446886 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.02869 -37.10611 -36.33848 -34.61158 -32.40005 -32.18206 -29.81181 -29.15857 -25.81072 -25.50509 -23.18962 -22.47587 -21.11817 -19.53993 -17.55060 -17.35395 -16.76769 -15.17970 -14.93139 -14.68612 -14.56485 -13.95413 -13.82106 -13.65600 -13.01608 -12.78512 -12.34092 -12.12626 -11.82779 -11.50620 -11.34270 -11.15890 -11.14207 -10.90654 -10.86631 -10.79559 -10.69316 -10.46804 -10.16970 -9.66460 -9.09383 -8.66701 -8.31362 -6.10170 -4.30775 1.70015 2.71438 3.24444 3.31507 3.33232 3.44009 3.93798 4.32315 4.43587 4.85300 4.91399 5.04553 5.17457 5.27004 5.36677 5.43887 5.64254 5.72963 5.82163 5.86493 5.91406 5.93557 6.01881 6.13150 6.22453 6.24603 6.32426 6.52808 6.58104 7.53019 7.72282 7.99100 8.68796 8.71368 9.25233 9.46385 10.94271 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.044819 B = 0.004941 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.586976 B = 5666.018088 C = 5865.283267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C 0.003 3.997 4 H 0.098 0.902 5 C -0.144 4.144 6 C 0.168 3.832 7 N -0.396 5.396 8 O 0.072 5.928 9 C 0.218 3.782 10 C -0.062 4.062 11 C 0.237 3.763 12 H 0.064 0.936 13 O -0.564 6.564 14 C -0.576 4.576 15 H 0.062 0.938 16 C 0.081 3.919 17 N -0.856 5.856 18 Si 0.895 3.105 19 H -0.278 1.278 20 H -0.285 1.285 21 H -0.272 1.272 22 N -0.500 5.500 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.107 0.893 33 H 0.349 0.651 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.887 3.960 -9.114 14.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.017 4.017 4 H 0.116 0.884 5 C -0.202 4.202 6 C -0.106 4.106 7 N -0.106 5.106 8 O 0.016 5.984 9 C -0.001 4.001 10 C -0.102 4.102 11 C 0.178 3.822 12 H 0.082 0.918 13 O -0.366 6.366 14 C -0.614 4.614 15 H 0.080 0.920 16 C -0.126 4.126 17 N -0.491 5.491 18 Si 0.721 3.279 19 H -0.204 1.204 20 H -0.211 1.211 21 H -0.196 1.196 22 N -0.233 5.233 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.110 0.890 32 H 0.125 0.875 33 H 0.194 0.806 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.984 3.274 -9.163 14.674 hybrid contribution 1.434 0.559 0.537 1.630 sum -9.550 3.833 -8.626 13.428 Atomic orbital electron populations 1.21801 0.94997 1.01923 1.02005 1.21566 0.96189 0.94769 1.03073 1.19520 0.83681 0.98180 1.00326 0.88374 1.21862 1.01702 1.00463 0.96133 1.25681 0.99587 0.96293 0.88993 1.74470 0.90096 1.22337 1.23712 1.85257 1.23817 1.54815 1.34519 1.29265 0.96310 0.89159 0.85403 1.21547 0.88191 1.03388 0.97025 1.19444 0.96320 0.79902 0.86552 0.91810 1.86615 1.49234 1.37093 1.63705 1.21513 1.19795 1.02884 1.17203 0.91969 1.25039 0.96518 0.94513 0.96541 1.70080 1.40459 1.08077 1.30491 0.86582 0.82045 0.78428 0.80799 1.20423 1.21072 1.19641 1.71908 1.01405 1.24775 1.25246 0.92344 0.92436 0.92449 0.91254 0.91500 0.91201 0.92493 0.91980 0.88997 0.87452 0.80639 0.92745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.67 37.16 0.36 -1.03 16 2 C -0.12 -1.45 5.38 -26.73 -0.14 -1.60 16 3 C 0.00 0.04 2.86 -91.77 -0.26 -0.22 16 4 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 5 C -0.14 -1.59 8.93 37.15 0.33 -1.26 16 6 C 0.17 2.99 6.72 -156.38 -1.05 1.94 16 7 N -0.40 -7.47 12.16 30.89 0.38 -7.10 16 8 O 0.07 1.41 11.31 18.12 0.20 1.61 16 9 C 0.22 4.28 7.54 -13.05 -0.10 4.18 16 10 C -0.06 -1.18 5.46 -27.88 -0.15 -1.34 16 11 C 0.24 5.73 2.81 -27.89 -0.08 5.65 16 12 H 0.06 1.76 8.14 -51.93 -0.42 1.34 16 13 O -0.56 -14.04 12.48 -35.23 -0.44 -14.48 16 14 C -0.58 -14.90 8.76 -34.44 -0.30 -15.20 16 15 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 16 C 0.08 2.18 5.40 -17.82 -0.10 2.09 16 17 N -0.86 -24.74 12.84 55.43 0.71 -24.03 16 18 Si 0.89 20.36 29.54 -169.99 -5.02 15.34 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 N -0.50 -9.91 11.55 -9.87 -0.11 -10.02 16 23 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 24 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 0.60 6.56 -51.93 -0.34 0.26 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 33 H 0.35 7.46 9.04 45.56 0.41 7.88 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 294.37 15.07 4.44 4.44 Total: -1.00 -30.60 294.37 -5.38 -35.98 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -4.04 Total: 5.05 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -1.49 Total: -6.78 kcal Atomic # 7 Polarization: -42.13 SS G_CDS: 0.97 Total: -41.16 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.23 Total: -12.87 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -30.60 -5.38 -35.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234006463.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.931 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds