Wall clock time and date at job start Mon Mar 30 2020 04:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 113.99981 * 2 1 4 4 C 1.53002 * 109.46950 * 179.97438 * 3 2 1 5 5 C 1.50700 * 109.47116 * 180.02562 * 4 3 2 6 6 N 1.29954 * 126.28654 * 90.03068 * 5 4 3 7 7 O 1.21293 * 110.25286 * 180.02562 * 6 5 4 8 8 C 1.33642 * 109.81058 * 359.97438 * 7 6 5 9 9 C 1.50698 * 126.55339 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47431 * 269.97717 * 9 8 7 11 11 H 1.09005 * 109.46510 * 305.00000 * 10 9 8 12 12 C 1.53000 * 109.47280 * 64.99429 * 10 9 8 13 13 C 1.50692 * 109.47480 * 184.99797 * 10 9 8 14 14 H 1.08008 * 120.00221 * 359.97438 * 13 10 9 15 15 C 1.37880 * 120.00332 * 179.97438 * 13 10 9 16 16 N 1.31511 * 120.00379 * 180.02562 * 15 13 10 17 17 Si 1.86801 * 119.99565 * 359.97438 * 15 13 10 18 18 H 1.48498 * 109.46867 * 90.00362 * 17 15 13 19 19 H 1.48501 * 109.47127 * 210.00079 * 17 15 13 20 20 H 1.48495 * 109.47468 * 330.00138 * 17 15 13 21 21 N 1.31130 * 106.90015 * 0.02562 * 8 7 6 22 22 H 1.08994 * 109.47348 * 179.97438 * 1 2 3 23 23 H 1.09008 * 109.46855 * 300.00252 * 1 2 3 24 24 H 1.09001 * 109.47305 * 59.99251 * 1 2 3 25 25 H 1.09007 * 109.46902 * 60.00790 * 3 2 1 26 26 H 1.08994 * 109.47601 * 300.00137 * 3 2 1 27 27 H 1.09003 * 109.47274 * 60.00602 * 4 3 2 28 28 H 1.08999 * 109.47622 * 300.00681 * 4 3 2 29 29 H 1.09000 * 109.46935 * 29.97313 * 9 8 7 30 30 H 1.08997 * 109.47416 * 149.97136 * 9 8 7 31 31 H 1.08999 * 109.47166 * 180.02562 * 12 10 9 32 32 H 1.08999 * 109.47100 * 300.00345 * 12 10 9 33 33 H 1.08994 * 109.46815 * 60.00339 * 12 10 9 34 34 H 0.97002 * 120.00185 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1484 2.5613 0.0013 6 7 4.4613 3.2634 1.0491 7 8 4.9350 4.3288 0.7146 8 6 4.9709 4.4098 -0.6189 9 6 5.4863 5.5676 -1.4342 10 6 4.3429 6.5459 -1.7105 11 1 3.5168 6.0149 -2.1835 12 6 3.8667 7.1593 -0.3922 13 6 4.8277 7.6394 -2.6271 14 1 5.8494 7.6371 -2.9773 15 6 3.9670 8.6428 -3.0187 16 7 4.3899 9.5968 -3.8191 17 14 2.1997 8.6464 -2.4137 18 1 2.1134 9.4087 -1.1422 19 1 1.3286 9.2842 -3.4333 20 1 1.7521 7.2492 -2.1844 21 7 4.4720 3.2892 -1.0824 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.6887 1.8464 0.8901 26 1 1.6886 1.8465 -0.8899 27 1 3.8575 0.6436 -0.8892 28 1 3.8568 0.6438 0.8908 29 1 6.2756 6.0779 -0.8821 30 1 5.8846 5.1980 -2.3791 31 1 3.0518 7.8559 -0.5890 32 1 3.5160 6.3684 0.2708 33 1 4.6927 7.6902 0.0808 34 1 3.7845 10.3030 -4.0943 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234684242.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:00 Heat of formation + Delta-G solvation = 11.114990 kcal Electronic energy + Delta-G solvation = -16999.485673 eV Core-core repulsion = 14128.913303 eV Total energy + Delta-G solvation = -2870.572371 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -45.30502 -38.22882 -36.09502 -35.66205 -33.08129 -31.73696 -30.60649 -27.28608 -26.86261 -25.21161 -24.28903 -23.02176 -21.24206 -19.71699 -17.90786 -17.25442 -16.74939 -16.54920 -16.16193 -15.28232 -14.92662 -14.38103 -13.93687 -13.58505 -13.39593 -12.93343 -12.56987 -12.40775 -12.16694 -11.91498 -11.63391 -11.55482 -11.34714 -11.04529 -10.78951 -10.59223 -10.41643 -10.08313 -9.92772 -9.68092 -9.32537 -9.18248 -8.64875 -6.17285 -4.18716 1.42547 2.40634 3.18058 3.21797 3.33221 3.34560 3.35694 4.06728 4.27259 4.32883 4.82728 4.85679 5.11110 5.12455 5.15441 5.17909 5.33436 5.41604 5.59746 5.69436 5.78653 5.88518 5.97910 6.18664 6.25284 6.36665 6.52345 6.65223 6.84175 6.94528 7.29503 7.59397 8.35913 8.43144 8.83940 9.43734 10.95280 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.027063 B = 0.005696 C = 0.005057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.371377 B = 4914.853547 C = 5535.058773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.068 3.932 4 C -0.022 4.022 5 C 0.163 3.837 6 N -0.394 5.394 7 O 0.072 5.928 8 C 0.213 3.787 9 C -0.017 4.017 10 C 0.016 3.984 11 H 0.035 0.965 12 C -0.153 4.153 13 C -0.518 4.518 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.895 5.895 17 Si 0.887 3.113 18 H -0.278 1.278 19 H -0.296 1.296 20 H -0.268 1.268 21 N -0.491 5.491 22 H 0.087 0.913 23 H 0.042 0.958 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.103 0.897 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.043 0.957 32 H 0.024 0.976 33 H 0.059 0.941 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.049 -14.362 7.801 16.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.310 6.310 3 C -0.010 4.010 4 C -0.060 4.060 5 C -0.110 4.110 6 N -0.104 5.104 7 O 0.015 5.985 8 C -0.006 4.006 9 C -0.056 4.056 10 C -0.004 4.004 11 H 0.053 0.947 12 C -0.210 4.210 13 C -0.556 4.556 14 H 0.098 0.902 15 C -0.127 4.127 16 N -0.533 5.533 17 Si 0.717 3.283 18 H -0.205 1.205 19 H -0.224 1.224 20 H -0.193 1.193 21 N -0.225 5.225 22 H 0.106 0.894 23 H 0.060 0.940 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.122 0.878 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.126 0.874 31 H 0.061 0.939 32 H 0.043 0.957 33 H 0.078 0.922 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.226 -14.939 8.202 17.559 hybrid contribution -1.203 0.584 0.282 1.367 sum -5.429 -14.355 8.484 17.537 Atomic orbital electron populations 1.22757 0.80538 1.02813 1.00305 1.87806 1.20098 1.27508 1.95543 1.22395 0.92451 0.84887 1.01277 1.19616 0.93135 0.87628 1.05667 1.25451 1.01489 0.99728 0.84320 1.74572 1.16698 0.94941 1.24161 1.85297 1.58593 1.28993 1.25619 1.29600 0.93271 0.96287 0.81443 1.20622 1.00318 0.87839 0.96796 1.19205 0.93192 0.93990 0.94062 0.94663 1.22267 1.00915 0.99440 0.98419 1.20837 0.99771 1.06954 1.28007 0.90175 1.24936 0.98284 0.95083 0.94417 1.69872 1.36087 1.12989 1.34318 0.86860 0.85279 0.78533 0.77621 1.20495 1.22356 1.19314 1.71951 1.18090 1.03597 1.28870 0.89413 0.93983 0.93784 0.92888 0.92255 0.87841 0.88507 0.88452 0.87372 0.93894 0.95715 0.92157 0.92431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.61 10.70 -35.23 -0.38 -4.99 16 3 C 0.07 0.83 5.92 37.16 0.22 1.05 16 4 C -0.02 -0.27 6.21 -27.88 -0.17 -0.45 16 5 C 0.16 2.63 7.47 -156.37 -1.17 1.46 16 6 N -0.39 -6.73 12.16 30.90 0.38 -6.36 16 7 O 0.07 1.26 10.75 18.11 0.19 1.46 16 8 C 0.21 3.77 6.92 -13.06 -0.09 3.68 16 9 C -0.02 -0.30 5.26 -27.88 -0.15 -0.45 16 10 C 0.02 0.34 1.88 -91.77 -0.17 0.17 16 11 H 0.04 0.82 7.20 -51.93 -0.37 0.45 16 12 C -0.15 -3.18 8.49 37.16 0.32 -2.87 16 13 C -0.52 -13.51 9.14 -34.44 -0.31 -13.83 16 14 H 0.08 2.21 7.99 -52.48 -0.42 1.79 16 15 C 0.08 2.08 5.45 -17.82 -0.10 1.98 16 16 N -0.90 -26.29 13.96 55.43 0.77 -25.52 16 17 Si 0.89 21.41 24.37 -169.99 -4.14 17.27 16 18 H -0.28 -6.54 6.87 56.52 0.39 -6.16 16 19 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.27 -6.30 6.53 56.52 0.37 -5.93 16 21 N -0.49 -8.81 11.55 -9.87 -0.11 -8.92 16 22 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.04 0.33 8.14 -51.92 -0.42 -0.09 16 24 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.10 1.09 8.14 -51.93 -0.42 0.66 16 29 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 30 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 31 H 0.04 0.95 3.28 -51.93 -0.17 0.78 16 32 H 0.02 0.46 6.93 -51.93 -0.36 0.10 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 286.87 15.07 4.32 4.32 Total: -1.00 -29.75 286.87 -4.21 -33.97 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -4.73 Total: -3.38 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: -0.51 Total: -7.85 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 1.04 Total: -40.80 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: -0.18 Total: -3.54 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.14 Total: 17.27 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -29.75 -4.21 -33.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234684242.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.081 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds