Wall clock time and date at job start Mon Mar 30 2020 04:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42896 * 114.00110 * 2 1 4 4 C 1.52998 * 109.47304 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.47526 * 180.02562 * 4 3 2 6 6 N 1.29951 * 126.28850 * 270.00619 * 5 4 3 7 7 O 1.21300 * 110.25010 * 179.97438 * 6 5 4 8 8 C 1.33641 * 109.81196 * 0.02562 * 7 6 5 9 9 C 1.50699 * 126.55380 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.47320 * 179.97438 * 9 8 7 11 11 C 1.53002 * 109.47142 * 59.95266 * 9 8 7 12 12 C 1.53001 * 109.47039 * 299.95650 * 9 8 7 13 13 C 1.50698 * 109.47281 * 184.99642 * 12 9 8 14 14 H 1.08002 * 119.99867 * 0.02562 * 13 12 9 15 15 C 1.37878 * 120.00015 * 179.97438 * 13 12 9 16 16 N 1.31514 * 120.00124 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99928 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47426 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47120 * 120.00129 * 17 15 13 20 20 H 1.48505 * 109.47028 * 240.00359 * 17 15 13 21 21 N 1.31134 * 106.89855 * 359.97438 * 8 7 6 22 22 H 1.08995 * 109.47561 * 59.99547 * 1 2 3 23 23 H 1.08998 * 109.47140 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.46891 * 299.99449 * 1 2 3 25 25 H 1.09006 * 109.46872 * 60.00304 * 3 2 1 26 26 H 1.08991 * 109.47496 * 300.00563 * 3 2 1 27 27 H 1.09006 * 109.46870 * 60.00349 * 4 3 2 28 28 H 1.09002 * 109.47727 * 300.00452 * 4 3 2 29 29 H 1.08999 * 109.47065 * 300.00220 * 11 9 8 30 30 H 1.08997 * 109.47009 * 60.00231 * 11 9 8 31 31 H 1.09001 * 109.47384 * 180.02562 * 11 9 8 32 32 H 1.09003 * 109.47017 * 305.00120 * 12 9 8 33 33 H 1.09006 * 109.47209 * 64.99670 * 12 9 8 34 34 H 0.97002 * 120.00029 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1485 2.5613 0.0013 6 7 4.4617 3.2643 -1.0459 7 8 4.9353 4.3293 -0.7102 8 6 4.9708 4.4092 0.6233 9 6 5.4850 5.5668 1.4398 10 1 5.3826 5.3373 2.5004 11 6 4.6767 6.8231 1.1090 12 6 6.9596 5.8078 1.1106 13 6 7.5066 6.8832 2.0136 14 1 6.8666 7.3479 2.7491 15 6 8.8244 7.2730 1.9016 16 7 9.6039 6.7067 1.0064 17 14 9.5027 8.6054 3.0215 18 1 8.4309 9.0776 3.9345 19 1 10.6267 8.0553 3.8210 20 1 9.9897 9.7423 2.1995 21 7 4.4717 3.2882 1.0857 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.6886 1.8463 0.8901 26 1 1.6886 1.8464 -0.8898 27 1 3.8574 0.6436 -0.8892 28 1 3.8568 0.6438 0.8908 29 1 4.7795 7.0524 0.0484 30 1 3.6262 6.6514 1.3434 31 1 5.0489 7.6605 1.6991 32 1 7.5211 4.8859 1.2619 33 1 7.0531 6.1237 0.0715 34 1 10.5311 6.9807 0.9279 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234684775.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:14:03 Heat of formation + Delta-G solvation = -0.144014 kcal Electronic energy + Delta-G solvation = -16716.756903 eV Core-core repulsion = 13845.696306 eV Total energy + Delta-G solvation = -2871.060598 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -45.17982 -38.23177 -35.96744 -35.57803 -32.88796 -31.87072 -30.27079 -27.16228 -26.85954 -24.65736 -24.25367 -22.95103 -21.88090 -19.53511 -17.68121 -17.00522 -16.60312 -16.52066 -16.13002 -15.25650 -14.66930 -14.55924 -13.84483 -13.60508 -13.22482 -12.65366 -12.53177 -12.24168 -11.96449 -11.62592 -11.57037 -11.38981 -11.07033 -10.99373 -10.91987 -10.63748 -10.54531 -10.19347 -9.93522 -9.91876 -9.27030 -9.21585 -8.46661 -6.10232 -4.14322 1.55203 2.50409 3.26930 3.29141 3.34733 3.37187 3.40374 4.12039 4.34751 4.40892 4.83343 4.87436 5.09070 5.12226 5.17551 5.26285 5.35780 5.40781 5.62717 5.67790 5.80479 5.84578 5.99882 6.22811 6.30469 6.53261 6.64653 6.80037 6.84177 7.46312 7.53972 7.85188 8.21018 8.54486 8.90272 9.50360 11.01118 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.058066 B = 0.004121 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.092820 B = 6793.097950 C = 6900.592582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.390 6.390 3 C 0.070 3.930 4 C -0.022 4.022 5 C 0.161 3.839 6 N -0.393 5.393 7 O 0.078 5.922 8 C 0.221 3.779 9 C -0.002 4.002 10 H 0.106 0.894 11 C -0.135 4.135 12 C 0.028 3.972 13 C -0.521 4.521 14 H 0.063 0.937 15 C 0.059 3.941 16 N -0.891 5.891 17 Si 0.895 3.105 18 H -0.271 1.271 19 H -0.284 1.284 20 H -0.283 1.283 21 N -0.499 5.499 22 H 0.041 0.959 23 H 0.087 0.913 24 H 0.042 0.958 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.097 0.903 28 H 0.103 0.897 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.085 0.915 32 H 0.022 0.978 33 H 0.029 0.971 34 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.730 -7.548 -1.375 16.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.309 6.309 3 C -0.008 4.008 4 C -0.061 4.061 5 C -0.112 4.112 6 N -0.103 5.103 7 O 0.021 5.979 8 C 0.002 3.998 9 C -0.022 4.022 10 H 0.124 0.876 11 C -0.193 4.193 12 C -0.010 4.010 13 C -0.559 4.559 14 H 0.081 0.919 15 C -0.143 4.143 16 N -0.529 5.529 17 Si 0.723 3.277 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.210 1.210 21 N -0.233 5.233 22 H 0.060 0.940 23 H 0.106 0.894 24 H 0.061 0.939 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.115 0.885 28 H 0.121 0.879 29 H 0.077 0.923 30 H 0.059 0.941 31 H 0.104 0.896 32 H 0.040 0.960 33 H 0.048 0.952 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.698 -8.298 -1.956 16.992 hybrid contribution 0.427 0.982 0.566 1.212 sum -14.271 -7.315 -1.390 16.097 Atomic orbital electron populations 1.22748 0.80639 1.02824 1.00172 1.87823 1.20005 1.27573 1.95511 1.22380 0.92549 0.84818 1.01047 1.19610 0.92968 0.87753 1.05757 1.25400 1.01575 0.99766 0.84447 1.74589 1.16415 0.95114 1.24196 1.85283 1.58319 1.28831 1.25472 1.29638 0.92032 0.96578 0.81548 1.20376 0.99553 0.85899 0.96420 0.87562 1.21783 0.97335 0.97389 1.02803 1.19255 0.85504 0.97869 0.98350 1.21090 0.95750 1.20208 1.18863 0.91874 1.25009 0.97033 0.96705 0.95519 1.69976 1.06651 1.42160 1.34153 0.86484 0.79084 0.81567 0.80568 1.19564 1.20996 1.20957 1.71939 1.18758 1.03557 1.29023 0.94006 0.89433 0.93892 0.92454 0.92896 0.88467 0.87893 0.92293 0.94105 0.89594 0.95960 0.95233 0.92812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.50 10.70 -35.23 -0.38 -4.88 16 3 C 0.07 0.82 5.92 37.16 0.22 1.04 16 4 C -0.02 -0.29 6.21 -27.88 -0.17 -0.46 16 5 C 0.16 2.75 7.47 -156.37 -1.17 1.58 16 6 N -0.39 -7.29 12.16 30.90 0.38 -6.91 16 7 O 0.08 1.52 11.31 18.11 0.20 1.73 16 8 C 0.22 4.26 7.02 -13.06 -0.09 4.17 16 9 C 0.00 -0.04 2.81 -91.77 -0.26 -0.30 16 10 H 0.11 2.01 8.14 -51.93 -0.42 1.59 16 11 C -0.14 -2.27 8.99 37.16 0.33 -1.94 16 12 C 0.03 0.68 4.43 -27.88 -0.12 0.56 16 13 C -0.52 -13.54 8.41 -34.44 -0.29 -13.83 16 14 H 0.06 1.55 7.06 -52.49 -0.37 1.18 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -25.77 13.29 55.43 0.74 -25.04 16 17 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 18 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 N -0.50 -9.37 11.55 -9.87 -0.11 -9.48 16 22 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 23 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 24 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 1.47 6.95 -51.93 -0.36 1.11 16 32 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 LS Contribution 297.60 15.07 4.48 4.48 Total: -1.00 -29.61 297.60 -5.18 -34.79 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -4.94 Total: -4.01 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -0.53 Total: -6.28 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 1.00 Total: -41.43 kcal Atomic # 8 Polarization: -2.98 SS G_CDS: -0.17 Total: -3.15 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.61 -5.18 -34.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234684775.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.651 kcal (2) G-P(sol) polarization free energy of solvation -29.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds