Wall clock time and date at job start Mon Mar 30 2020 04:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.08995 * 109.47147 * 329.99895 * 3 2 1 5 5 C 1.53003 * 109.47320 * 89.99490 * 3 2 1 6 6 C 1.50702 * 109.47016 * 209.99601 * 3 2 1 7 7 N 1.29948 * 126.28639 * 314.68721 * 6 3 2 8 8 O 1.21299 * 110.24706 * 179.84279 * 7 6 3 9 9 C 1.33646 * 109.81528 * 0.42690 * 8 7 6 10 10 C 1.50693 * 126.55312 * 179.71833 * 9 8 7 11 11 C 1.52999 * 109.46989 * 270.02270 * 10 9 8 12 12 H 1.08998 * 109.46919 * 304.99667 * 11 10 9 13 13 C 1.52993 * 109.47171 * 65.00175 * 11 10 9 14 14 C 1.50706 * 109.47012 * 185.00359 * 11 10 9 15 15 H 1.08000 * 119.99747 * 359.97438 * 14 11 10 16 16 C 1.37879 * 120.00176 * 180.02562 * 14 11 10 17 17 N 1.31514 * 120.00270 * 179.97438 * 16 14 11 18 18 Si 1.86802 * 119.99567 * 359.97438 * 16 14 11 19 19 H 1.48506 * 109.47029 * 90.00515 * 18 16 14 20 20 H 1.48500 * 109.46732 * 209.99992 * 18 16 14 21 21 H 1.48499 * 109.47447 * 330.00482 * 18 16 14 22 22 N 1.31135 * 106.89394 * 359.73588 * 9 8 7 23 23 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 24 24 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 26 26 H 1.09001 * 109.46999 * 179.97438 * 5 3 2 27 27 H 1.08990 * 109.47164 * 300.00165 * 5 3 2 28 28 H 1.09004 * 109.46783 * 60.00316 * 5 3 2 29 29 H 1.09001 * 109.47434 * 30.02802 * 10 9 8 30 30 H 1.09004 * 109.47165 * 150.02032 * 10 9 8 31 31 H 1.09007 * 109.47391 * 59.99912 * 13 11 10 32 32 H 1.09000 * 109.47463 * 179.97438 * 13 11 10 33 33 H 1.08995 * 109.47170 * 300.00089 * 13 11 10 34 34 H 0.96991 * 119.99811 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9993 -0.5138 5 6 2.2176 1.7715 1.4425 6 6 3.3387 1.2638 -0.7103 7 7 4.2685 0.3702 -0.5506 8 8 5.2143 0.6154 -1.2695 9 6 4.9741 1.7275 -1.9707 10 6 5.8968 2.3747 -2.9709 11 6 6.7966 3.3845 -2.2557 12 1 6.1796 4.0975 -1.7089 13 6 7.7132 2.6475 -1.2773 14 6 7.6331 4.1195 -3.2712 15 1 7.5332 3.8891 -4.3216 16 6 8.5266 5.0854 -2.8593 17 7 9.2570 5.7265 -3.7454 18 14 8.6998 5.4834 -1.0424 19 1 9.7444 4.6147 -0.4427 20 1 9.0888 6.9076 -0.8826 21 1 7.4041 5.2443 -0.3575 22 7 3.7820 2.1480 -1.6217 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8901 26 1 2.6613 2.7670 1.4424 27 1 1.2568 1.8015 1.9562 28 1 2.8829 1.0775 1.9564 29 1 6.5131 1.6104 -3.4444 30 1 5.3070 2.8877 -3.7306 31 1 8.3303 1.9345 -1.8242 32 1 8.3546 3.3668 -0.7680 33 1 7.1082 2.1159 -0.5428 34 1 9.8852 6.4062 -3.4556 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234742439.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:07 Heat of formation + Delta-G solvation = -6.110543 kcal Electronic energy + Delta-G solvation = -17250.644091 eV Core-core repulsion = 14379.324765 eV Total energy + Delta-G solvation = -2871.319326 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -46.64663 -39.51699 -37.65857 -36.69984 -34.48987 -33.22085 -31.83868 -28.81544 -27.79044 -27.13130 -25.81472 -24.50809 -22.46697 -21.29688 -19.31529 -18.85472 -18.47041 -17.59912 -16.85427 -16.79052 -16.26667 -15.58550 -15.43675 -14.80730 -14.40246 -14.21773 -13.93062 -13.66183 -13.54708 -13.39422 -13.01904 -12.80648 -12.64940 -12.39040 -12.25100 -12.21115 -11.99610 -11.78517 -11.42777 -11.12816 -10.95354 -10.79087 -10.68482 -8.28215 -6.32034 0.09754 1.08479 1.32006 1.38216 1.46480 1.82694 2.16926 2.33238 2.89617 3.08083 3.19085 3.71544 3.92744 4.11866 4.16912 4.34470 4.41873 4.45681 4.51185 4.58484 4.62176 4.73762 4.80642 4.81731 4.83676 4.91685 5.05877 5.08234 5.28007 5.58056 5.63630 5.99991 6.27675 6.75060 7.11214 7.33617 8.87630 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.043603 B = 0.005419 C = 0.005213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.010656 B = 5166.088622 C = 5370.146225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.402 6.402 3 C 0.180 3.820 4 H 0.109 0.891 5 C -0.163 4.163 6 C 0.158 3.842 7 N -0.388 5.388 8 O 0.071 5.929 9 C 0.210 3.790 10 C -0.008 4.008 11 C 0.016 3.984 12 H 0.024 0.976 13 C -0.150 4.150 14 C -0.513 4.513 15 H 0.055 0.945 16 C 0.022 3.978 17 N -0.942 5.942 18 Si 0.940 3.060 19 H -0.267 1.267 20 H -0.300 1.300 21 H -0.258 1.258 22 N -0.502 5.502 23 H 0.065 0.935 24 H 0.102 0.898 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.102 0.898 28 H 0.055 0.945 29 H 0.117 0.883 30 H 0.112 0.888 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.632 -9.128 8.878 20.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.320 6.320 3 C 0.120 3.880 4 H 0.127 0.873 5 C -0.221 4.221 6 C -0.116 4.116 7 N -0.098 5.098 8 O 0.014 5.986 9 C -0.009 4.009 10 C -0.046 4.046 11 C -0.004 4.004 12 H 0.042 0.958 13 C -0.208 4.208 14 C -0.551 4.551 15 H 0.074 0.926 16 C -0.176 4.176 17 N -0.583 5.583 18 Si 0.768 3.232 19 H -0.193 1.193 20 H -0.228 1.228 21 H -0.182 1.182 22 N -0.237 5.237 23 H 0.084 0.916 24 H 0.120 0.880 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.120 0.880 28 H 0.074 0.926 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.850 -9.596 9.402 20.777 hybrid contribution 0.541 0.720 0.389 0.981 sum -15.309 -8.876 9.791 20.224 Atomic orbital electron populations 1.23128 0.77962 1.04511 1.01693 1.87954 1.22630 1.26245 1.95214 1.20208 0.85619 0.86585 0.95546 0.87338 1.22224 1.04550 1.01684 0.93626 1.26149 0.99704 0.89141 0.96588 1.74579 0.97592 1.23679 1.13999 1.85311 1.35225 1.38077 1.40021 1.29413 0.92456 0.84409 0.94636 1.20430 0.93932 0.98058 0.92217 1.19085 0.93498 0.93261 0.94556 0.95751 1.22189 0.99840 0.99882 0.98841 1.21139 1.20624 1.19226 0.94065 0.92648 1.25670 0.95134 0.95668 1.01122 1.69999 1.26112 1.26333 1.35807 0.85987 0.79487 0.76020 0.81704 1.19315 1.22769 1.18220 1.71890 1.09811 1.27399 1.14556 0.91602 0.87970 0.92846 0.91059 0.87979 0.92555 0.86512 0.86936 0.91162 0.95048 0.93930 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.82 113.37 1.23 1.55 16 2 O -0.40 -9.85 10.33 -148.98 -1.54 -11.39 16 3 C 0.18 4.43 3.27 29.85 0.10 4.53 16 4 H 0.11 2.26 7.79 -2.39 -0.02 2.24 16 5 C -0.16 -3.32 9.51 71.98 0.68 -2.64 16 6 C 0.16 5.19 7.10 138.46 0.98 6.17 16 7 N -0.39 -13.78 12.16 -60.32 -0.73 -14.52 16 8 O 0.07 2.48 10.75 74.81 0.80 3.28 16 9 C 0.21 7.35 6.92 88.38 0.61 7.96 16 10 C -0.01 -0.26 5.25 29.85 0.16 -0.11 16 11 C 0.02 0.69 1.88 -11.54 -0.02 0.67 16 12 H 0.02 1.11 7.20 -2.39 -0.02 1.09 16 13 C -0.15 -6.02 8.49 71.98 0.61 -5.41 16 14 C -0.51 -26.88 9.14 25.60 0.23 -26.65 16 15 H 0.06 3.11 7.99 -2.91 -0.02 3.09 16 16 C 0.02 1.22 5.45 84.66 0.46 1.69 16 17 N -0.94 -56.46 13.96 21.45 0.30 -56.16 16 18 Si 0.94 43.94 24.37 68.60 1.67 45.61 16 19 H -0.27 -11.93 6.87 99.48 0.68 -11.24 16 20 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 21 H -0.26 -11.51 6.53 99.48 0.65 -10.86 16 22 N -0.50 -17.77 11.55 -303.20 -3.50 -21.27 16 23 H 0.07 0.67 7.87 -2.39 -0.02 0.66 16 24 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.05 0.68 8.09 -2.38 -0.02 0.66 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.10 1.42 7.87 -2.39 -0.02 1.40 16 28 H 0.06 1.30 8.14 -2.38 -0.02 1.29 16 29 H 0.12 3.62 8.14 -2.39 -0.02 3.60 16 30 H 0.11 3.82 8.14 -2.38 -0.02 3.80 16 31 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 32 H 0.03 1.32 3.27 -2.39 -0.01 1.31 16 33 H 0.04 1.54 6.93 -2.39 -0.02 1.52 16 34 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -65.01 285.62 3.06 -61.95 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: 1.01 Total: 4.73 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 5.04 Total: -12.23 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -3.94 Total: -91.94 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.74 Total: -8.11 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.67 Total: 45.61 kcal Total: -65.01 3.06 -61.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234742439.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.840 kcal (2) G-P(sol) polarization free energy of solvation -65.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds