Wall clock time and date at job start Mon Mar 30 2020 04:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42902 * 113.99951 * 2 1 4 4 H 1.09000 * 109.47084 * 30.00185 * 3 2 1 5 5 C 1.53001 * 109.47225 * 270.00117 * 3 2 1 6 6 C 1.50700 * 109.47361 * 149.99926 * 3 2 1 7 7 N 1.29954 * 126.28654 * 45.02928 * 6 3 2 8 8 O 1.21293 * 110.25286 * 180.02562 * 7 6 3 9 9 C 1.33642 * 109.81058 * 359.97438 * 8 7 6 10 10 C 1.50698 * 126.55339 * 180.02562 * 9 8 7 11 11 C 1.53001 * 109.47431 * 269.97717 * 10 9 8 12 12 H 1.09005 * 109.46510 * 305.00000 * 11 10 9 13 13 C 1.53000 * 109.47280 * 64.99429 * 11 10 9 14 14 C 1.50692 * 109.47480 * 184.99797 * 11 10 9 15 15 H 1.08008 * 120.00221 * 359.97438 * 14 11 10 16 16 C 1.37880 * 120.00332 * 179.97438 * 14 11 10 17 17 N 1.31514 * 119.99480 * 359.97438 * 16 14 11 18 18 Si 1.86795 * 120.00373 * 180.02562 * 16 14 11 19 19 H 1.48502 * 109.47145 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47570 * 119.99680 * 18 16 14 21 21 H 1.48501 * 109.47180 * 240.00241 * 18 16 14 22 22 N 1.31130 * 106.90015 * 0.02562 * 9 8 7 23 23 H 1.09002 * 109.47141 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47707 * 299.99528 * 1 2 3 25 25 H 1.09001 * 109.47338 * 60.00134 * 1 2 3 26 26 H 1.09003 * 109.47390 * 179.97438 * 5 3 2 27 27 H 1.09000 * 109.47145 * 300.00030 * 5 3 2 28 28 H 1.08998 * 109.47160 * 60.00027 * 5 3 2 29 29 H 1.09000 * 109.46935 * 29.97313 * 10 9 8 30 30 H 1.08997 * 109.47416 * 149.97136 * 10 9 8 31 31 H 1.08999 * 109.47100 * 300.00345 * 13 11 10 32 32 H 1.08994 * 109.46815 * 60.00339 * 13 11 10 33 33 H 1.08999 * 109.47166 * 180.02562 * 13 11 10 34 34 H 0.97002 * 119.99674 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2175 1.7714 -1.4425 6 6 3.3385 1.2640 0.7104 7 7 4.2664 0.3675 0.5546 8 8 5.2138 0.6151 1.2703 9 6 4.9734 1.7270 1.9716 10 6 5.8957 2.3738 2.9726 11 6 5.6195 1.8019 4.3645 12 1 4.5632 1.9241 4.6044 13 6 5.9785 0.3148 4.3853 14 6 6.4541 2.5344 5.3833 15 1 7.1157 3.3283 5.0693 16 6 6.3731 2.1912 6.7162 17 7 5.5671 1.2249 7.0985 18 14 7.4070 3.0996 7.9791 19 1 8.2239 4.1355 7.2974 20 1 6.5160 3.7475 8.9749 21 1 8.3037 2.1377 8.6691 22 7 3.7815 2.1477 1.6223 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 2.6605 2.7674 -1.4425 27 1 2.8828 1.0775 -1.9564 28 1 1.2567 1.8015 -1.9563 29 1 6.9306 2.1727 2.6959 30 1 5.7247 3.4503 2.9816 31 1 5.3748 -0.2150 3.6484 32 1 7.0346 0.1926 4.1453 33 1 5.7813 -0.0928 5.3768 34 1 5.5103 0.9832 8.0362 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234782923.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:13 Heat of formation + Delta-G solvation = -12.225724 kcal Electronic energy + Delta-G solvation = -17171.340837 eV Core-core repulsion = 14299.756337 eV Total energy + Delta-G solvation = -2871.584500 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -46.60384 -39.51296 -37.48299 -36.64873 -34.45424 -32.86483 -31.69418 -28.34728 -27.79117 -27.23594 -25.78654 -24.47633 -22.43865 -21.34428 -19.17835 -18.70776 -18.23501 -17.59351 -16.82031 -16.56084 -16.27141 -15.55980 -15.18977 -14.67910 -14.38269 -13.91845 -13.57159 -13.52925 -13.49096 -13.05690 -12.87993 -12.79809 -12.59297 -12.43963 -12.22746 -12.15374 -12.00384 -11.73786 -11.73111 -10.92511 -10.90891 -10.73065 -10.45117 -8.08314 -6.23273 0.13725 1.11077 1.47540 1.49941 1.60978 1.88151 2.21882 2.48217 2.90977 3.21942 3.23079 3.73371 3.95242 4.16708 4.41215 4.41762 4.48767 4.49780 4.56541 4.63440 4.74912 4.80358 4.82590 4.91692 5.03669 5.09924 5.10509 5.31590 5.61539 5.84730 6.00782 6.04886 6.28559 6.88216 7.14207 7.46467 8.97989 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.043906 B = 0.004948 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.572763 B = 5657.605681 C = 5836.964548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.405 6.405 3 C 0.178 3.822 4 H 0.105 0.895 5 C -0.158 4.158 6 C 0.158 3.842 7 N -0.391 5.391 8 O 0.066 5.934 9 C 0.213 3.787 10 C -0.016 4.016 11 C 0.049 3.951 12 H -0.004 1.004 13 C -0.130 4.130 14 C -0.526 4.526 15 H 0.074 0.926 16 C 0.010 3.990 17 N -0.922 5.922 18 Si 0.961 3.039 19 H -0.258 1.258 20 H -0.286 1.286 21 H -0.284 1.284 22 N -0.506 5.506 23 H 0.100 0.900 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.057 0.943 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.008 0.992 32 H 0.045 0.955 33 H 0.056 0.944 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.338 1.914 -13.842 15.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.324 6.324 3 C 0.118 3.882 4 H 0.123 0.877 5 C -0.216 4.216 6 C -0.116 4.116 7 N -0.102 5.102 8 O 0.010 5.990 9 C -0.006 4.006 10 C -0.055 4.055 11 C 0.029 3.971 12 H 0.014 0.986 13 C -0.188 4.188 14 C -0.564 4.564 15 H 0.092 0.908 16 C -0.188 4.188 17 N -0.562 5.562 18 Si 0.787 3.213 19 H -0.182 1.182 20 H -0.212 1.212 21 H -0.210 1.210 22 N -0.241 5.241 23 H 0.119 0.881 24 H 0.067 0.933 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.076 0.924 28 H 0.119 0.881 29 H 0.133 0.867 30 H 0.131 0.869 31 H 0.027 0.973 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.727 1.244 -14.253 15.810 hybrid contribution 0.258 0.220 1.186 1.234 sum -6.469 1.465 -13.067 14.654 Atomic orbital electron populations 1.23116 0.78013 1.04460 1.01662 1.87955 1.22632 1.26551 1.95239 1.20271 0.85476 0.86419 0.96010 0.87719 1.22193 1.04585 1.01887 0.92893 1.26187 0.99860 0.89039 0.96500 1.74550 0.97942 1.23120 1.14623 1.85296 1.35218 1.38146 1.40375 1.29530 0.93173 0.84261 0.93601 1.20678 0.95928 0.99810 0.89035 1.18618 0.95742 0.93203 0.89499 0.98603 1.21729 0.98821 0.97947 1.00321 1.21471 1.24593 1.18480 0.91902 0.90798 1.25795 0.96512 0.95801 1.00708 1.70061 1.38903 1.30589 1.16621 0.85452 0.78477 0.78642 0.78753 1.18151 1.21233 1.21005 1.71876 1.09344 1.28744 1.14148 0.88122 0.93278 0.91120 0.90425 0.92433 0.88066 0.86690 0.86872 0.97300 0.93597 0.92534 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.82 113.37 1.23 1.64 16 2 O -0.41 -11.40 10.33 -148.98 -1.54 -12.94 16 3 C 0.18 4.82 3.27 29.85 0.10 4.92 16 4 H 0.11 2.49 7.79 -2.39 -0.02 2.47 16 5 C -0.16 -3.20 9.51 71.98 0.68 -2.52 16 6 C 0.16 5.69 7.10 138.46 0.98 6.67 16 7 N -0.39 -15.25 12.16 -60.32 -0.73 -15.98 16 8 O 0.07 2.57 10.75 74.85 0.80 3.37 16 9 C 0.21 8.27 6.92 88.38 0.61 8.88 16 10 C -0.02 -0.59 5.26 29.85 0.16 -0.44 16 11 C 0.05 2.36 2.29 -11.54 -0.03 2.34 16 12 H 0.00 -0.23 8.14 -2.38 -0.02 -0.25 16 13 C -0.13 -6.28 8.78 71.98 0.63 -5.65 16 14 C -0.53 -26.96 8.56 25.60 0.22 -26.74 16 15 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 16 C 0.01 0.55 5.30 84.66 0.45 1.00 16 17 N -0.92 -52.66 11.32 21.45 0.24 -52.42 16 18 Si 0.96 41.76 29.54 68.60 2.03 43.79 16 19 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 20 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 N -0.51 -19.68 11.55 -303.19 -3.50 -23.18 16 23 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.05 0.84 8.09 -2.39 -0.02 0.82 16 25 H 0.07 0.88 7.87 -2.39 -0.02 0.86 16 26 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.10 1.41 7.87 -2.39 -0.02 1.39 16 29 H 0.11 3.77 8.14 -2.39 -0.02 3.75 16 30 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 31 H 0.01 0.38 6.93 -2.39 -0.02 0.36 16 32 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.06 3.07 6.07 -2.39 -0.01 3.05 16 34 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -64.19 292.45 3.42 -60.77 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.09 Total: 6.49 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 5.03 Total: -9.90 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -3.99 Total: -91.58 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -0.73 Total: -9.57 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Total: -64.19 3.42 -60.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234782923.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.548 kcal (2) G-P(sol) polarization free energy of solvation -64.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds