Wall clock time and date at job start Mon Mar 30 2020 04:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99736 * 2 1 4 4 H 1.09003 * 109.46948 * 29.99984 * 3 2 1 5 5 C 1.53002 * 109.46789 * 269.99824 * 3 2 1 6 6 C 1.53001 * 109.46969 * 149.99876 * 3 2 1 7 7 C 1.50706 * 109.46848 * 294.99740 * 6 3 2 8 8 N 1.29946 * 126.28426 * 270.02363 * 7 6 3 9 9 O 1.21309 * 110.24521 * 179.68915 * 8 7 6 10 10 C 1.33639 * 109.80928 * 0.46841 * 9 8 7 11 11 C 1.50706 * 126.55037 * 179.79972 * 10 9 8 12 12 C 1.52997 * 109.47238 * 269.69219 * 11 10 9 13 13 C 1.50696 * 109.47055 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00290 * 0.02562 * 13 12 11 15 15 C 1.37887 * 120.00079 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99493 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99862 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47162 * 90.00212 * 17 15 13 19 19 H 1.48498 * 109.46805 * 210.00384 * 17 15 13 20 20 H 1.48494 * 109.47357 * 330.00050 * 17 15 13 21 21 N 1.31128 * 106.90120 * 359.54177 * 10 9 8 22 22 H 1.09004 * 109.47060 * 60.00729 * 1 2 3 23 23 H 1.09000 * 109.46809 * 180.02562 * 1 2 3 24 24 H 1.08992 * 109.47442 * 299.99825 * 1 2 3 25 25 H 1.08997 * 109.47137 * 59.99936 * 5 3 2 26 26 H 1.09000 * 109.46821 * 180.02562 * 5 3 2 27 27 H 1.09003 * 109.47000 * 299.99959 * 5 3 2 28 28 H 1.08996 * 109.46965 * 174.99936 * 6 3 2 29 29 H 1.08999 * 109.47236 * 55.00133 * 6 3 2 30 30 H 1.09001 * 109.46953 * 29.68831 * 11 10 9 31 31 H 1.09000 * 109.47318 * 149.68429 * 11 10 9 32 32 H 1.09001 * 109.46832 * 299.99686 * 12 11 10 33 33 H 1.09004 * 109.47261 * 59.99705 * 12 11 10 34 34 H 0.96999 * 119.99718 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9994 0.5138 5 6 2.2176 1.7713 -1.4425 6 6 3.3588 1.2633 0.7213 7 6 3.1414 0.9237 2.1734 8 7 2.9416 1.7696 3.1394 9 8 2.7957 1.1804 4.1898 10 6 2.9018 -0.1365 3.9889 11 6 2.7879 -1.2159 5.0344 12 6 4.1715 -1.5081 5.6186 13 6 4.0575 -2.5870 6.6645 14 1 3.0946 -3.0212 6.8897 15 6 5.1826 -3.0206 7.3332 16 7 6.3552 -2.4922 7.0586 17 14 5.0414 -4.3585 8.6292 18 1 5.2128 -5.6876 7.9894 19 1 6.0949 -4.1646 9.6576 20 1 3.7041 -4.2869 9.2709 21 7 3.1184 -0.3104 2.7074 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.2568 1.8013 -1.9564 26 1 2.6613 2.7669 -1.4426 27 1 2.8829 1.0774 -1.9563 28 1 3.8426 2.2370 0.6444 29 1 3.9931 0.5053 0.2618 30 1 2.1209 -0.8827 5.8295 31 1 2.3869 -2.1216 4.5795 32 1 4.8385 -1.8413 4.8236 33 1 4.5725 -0.6024 6.0736 34 1 7.1467 -2.7970 7.5293 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234783884.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:50 Heat of formation + Delta-G solvation = -21.187409 kcal Electronic energy + Delta-G solvation = -16854.314803 eV Core-core repulsion = 13982.341695 eV Total energy + Delta-G solvation = -2871.973108 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -46.51862 -39.48252 -37.06371 -36.30630 -34.64362 -33.47505 -31.83593 -28.95647 -27.74022 -27.51761 -24.78731 -23.87974 -22.69119 -21.69149 -19.10530 -18.64920 -18.25446 -17.70769 -16.50731 -16.46144 -16.27355 -15.75166 -15.30172 -14.82801 -14.35276 -14.00395 -13.78374 -13.59462 -13.40983 -13.11929 -13.00946 -12.80602 -12.72761 -12.54973 -12.27290 -12.03871 -11.94893 -11.84759 -11.64098 -11.33806 -10.83216 -10.56225 -10.55357 -8.19805 -6.31995 0.14325 1.26390 1.46723 1.47819 1.58933 1.89058 2.44474 2.70107 2.75195 3.10772 3.15626 3.81776 3.87570 4.10358 4.21145 4.38547 4.39258 4.45709 4.53621 4.56527 4.67042 4.77041 4.78759 4.84203 4.94250 4.98146 5.05771 5.28027 5.43434 5.53622 5.78004 6.13755 6.22447 6.83571 7.17262 7.38189 8.92816 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.044200 B = 0.004408 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.330865 B = 6350.615116 C = 6533.363613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.402 6.402 3 C 0.090 3.910 4 H 0.060 0.940 5 C -0.164 4.164 6 C -0.029 4.029 7 C 0.173 3.827 8 N -0.412 5.412 9 O 0.055 5.945 10 C 0.203 3.797 11 C -0.013 4.013 12 C 0.034 3.966 13 C -0.539 4.539 14 H 0.078 0.922 15 C 0.000 4.000 16 N -0.936 5.936 17 Si 0.971 3.029 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.256 1.256 21 N -0.501 5.501 22 H 0.062 0.938 23 H 0.091 0.909 24 H 0.030 0.970 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.068 0.932 28 H 0.127 0.873 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.111 0.889 32 H -0.007 1.007 33 H -0.003 1.003 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.882 7.518 -13.868 19.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.321 6.321 3 C 0.031 3.969 4 H 0.078 0.922 5 C -0.221 4.221 6 C -0.067 4.067 7 C -0.100 4.100 8 N -0.126 5.126 9 O 0.002 5.998 10 C -0.016 4.016 11 C -0.052 4.052 12 C -0.004 4.004 13 C -0.577 4.577 14 H 0.096 0.904 15 C -0.198 4.198 16 N -0.576 5.576 17 Si 0.795 3.205 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.180 1.180 21 N -0.235 5.235 22 H 0.080 0.920 23 H 0.109 0.891 24 H 0.049 0.951 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.087 0.913 28 H 0.145 0.855 29 H 0.122 0.878 30 H 0.132 0.868 31 H 0.129 0.871 32 H 0.011 0.989 33 H 0.016 0.984 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.562 7.983 -14.296 19.485 hybrid contribution 0.271 -0.456 0.938 1.077 sum -10.291 7.527 -13.358 18.466 Atomic orbital electron populations 1.22871 0.80113 1.03446 1.00225 1.87996 1.20850 1.28067 1.95213 1.22155 0.92714 0.84858 0.97132 0.92216 1.22204 1.03460 1.02667 0.93765 1.20404 0.99108 1.05195 0.82030 1.26329 0.99171 0.84269 1.00201 1.74519 1.23281 1.21917 0.92875 1.85231 1.65558 1.19783 1.29187 1.29560 0.92564 0.85571 0.93914 1.20483 1.01273 0.91110 0.92295 1.18943 0.90522 0.96096 0.94857 1.21572 0.94968 1.20570 1.20607 0.90371 1.26013 0.94850 0.99302 0.99642 1.70118 0.99594 1.44275 1.43564 0.85353 0.78441 0.78598 0.78096 1.19958 1.21240 1.17968 1.71985 1.21280 1.24632 1.05635 0.91963 0.89079 0.95122 0.91113 0.89452 0.91313 0.85466 0.87763 0.86752 0.87088 0.98894 0.98415 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.82 113.37 1.23 1.81 16 2 O -0.40 -10.54 10.10 -148.98 -1.50 -12.05 16 3 C 0.09 1.94 2.71 30.60 0.08 2.02 16 4 H 0.06 1.28 7.79 -2.39 -0.02 1.27 16 5 C -0.16 -2.34 9.53 71.98 0.69 -1.65 16 6 C -0.03 -0.71 5.55 29.85 0.17 -0.55 16 7 C 0.17 6.03 7.24 138.47 1.00 7.04 16 8 N -0.41 -15.17 12.16 -60.32 -0.73 -15.90 16 9 O 0.06 2.14 11.31 74.86 0.85 2.99 16 10 C 0.20 8.07 7.77 88.38 0.69 8.75 16 11 C -0.01 -0.50 5.78 29.85 0.17 -0.33 16 12 C 0.03 1.75 4.95 29.85 0.15 1.90 16 13 C -0.54 -29.08 9.11 25.60 0.23 -28.85 16 14 H 0.08 3.86 7.74 -2.91 -0.02 3.84 16 15 C 0.00 0.00 5.46 84.66 0.46 0.46 16 16 N -0.94 -56.41 13.29 21.45 0.28 -56.13 16 17 Si 0.97 42.84 29.54 68.60 2.03 44.86 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 21 N -0.50 -20.04 11.55 -303.20 -3.50 -23.55 16 22 H 0.06 0.91 7.87 -2.38 -0.02 0.90 16 23 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 24 H 0.03 0.63 8.08 -2.39 -0.02 0.61 16 25 H 0.07 0.88 7.87 -2.39 -0.02 0.86 16 26 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 1.00 8.14 -2.39 -0.02 0.99 16 28 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 31 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 32 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 33 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 34 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -67.73 299.12 3.36 -64.37 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: 1.08 Total: 4.79 kcal Atomic # 6 Polarization: -14.26 SS G_CDS: 4.87 Total: -9.39 kcal Atomic # 7 Polarization: -91.63 SS G_CDS: -3.95 Total: -95.58 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: -0.66 Total: -9.06 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -67.73 3.36 -64.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234783884.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.186 kcal (2) G-P(sol) polarization free energy of solvation -67.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds