Wall clock time and date at job start Mon Mar 30 2020 03:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00001 * 2 1 4 4 H 1.09002 * 109.46836 * 31.67671 * 3 2 1 5 5 C 1.50694 * 109.47455 * 271.67330 * 3 2 1 6 6 N 1.30452 * 126.07407 * 314.69745 * 5 3 2 7 7 O 1.21279 * 110.68207 * 179.79592 * 6 5 3 8 8 C 1.34745 * 109.53577 * 0.46154 * 7 6 5 9 9 C 1.40338 * 126.79622 * 179.69405 * 8 7 6 10 10 H 1.08004 * 120.00401 * 185.90548 * 9 8 7 11 11 C 1.40464 * 119.99927 * 5.90697 * 9 8 7 12 12 N 1.30507 * 119.99749 * 5.54249 * 11 9 8 13 13 Si 1.86803 * 119.99922 * 185.54916 * 11 9 8 14 14 H 1.48497 * 109.47234 * 94.95310 * 13 11 9 15 15 H 1.48503 * 109.46604 * 214.95173 * 13 11 9 16 16 H 1.48501 * 109.47156 * 334.94992 * 13 11 9 17 17 N 1.33329 * 106.41454 * 359.71400 * 8 7 6 18 18 C 1.52999 * 109.46757 * 151.67202 * 3 2 1 19 19 C 1.53000 * 109.47134 * 55.46576 * 18 3 2 20 20 C 1.53000 * 109.46735 * 175.46061 * 18 3 2 21 21 C 1.52999 * 109.47715 * 295.46023 * 18 3 2 22 22 H 1.09001 * 109.47492 * 295.59561 * 1 2 3 23 23 H 1.09000 * 109.47227 * 175.59239 * 1 2 3 24 24 H 1.08999 * 109.47128 * 55.59489 * 1 2 3 25 25 H 0.97007 * 119.99634 * 180.02562 * 12 11 9 26 26 H 1.09000 * 109.47485 * 59.99632 * 19 18 3 27 27 H 1.09005 * 109.47353 * 179.97438 * 19 18 3 28 28 H 1.08999 * 109.46923 * 299.99879 * 19 18 3 29 29 H 1.08999 * 109.47044 * 60.00394 * 20 18 3 30 30 H 1.09005 * 109.46959 * 180.02562 * 20 18 3 31 31 H 1.09000 * 109.47253 * 299.99982 * 20 18 3 32 32 H 1.09006 * 109.46382 * 57.71193 * 21 18 3 33 33 H 1.08994 * 109.47550 * 177.71054 * 21 18 3 34 34 H 1.09000 * 109.46945 * 297.71814 * 21 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3590 1.9931 0.5397 5 6 2.1767 1.7813 -1.4201 6 7 2.6549 1.0833 -2.4130 7 8 2.6602 1.7384 -3.4337 8 6 2.1761 2.9702 -3.1810 9 6 2.0281 4.0201 -4.1005 10 1 1.7160 4.9963 -3.7598 11 6 2.2860 3.8013 -5.4638 12 7 2.5576 2.5987 -5.8917 13 14 2.2403 5.2318 -6.6643 14 1 3.6138 5.7639 -6.8527 15 1 1.7066 4.7658 -7.9693 16 1 1.3642 6.3028 -6.1251 17 7 1.8659 2.9945 -1.8846 18 6 3.3776 1.2548 0.6845 19 6 4.2541 0.2067 -0.0040 20 6 4.0489 2.6261 0.5847 21 6 3.1974 0.8812 2.1572 22 1 -0.3634 0.4440 0.9268 23 1 -0.3634 -1.0246 -0.0790 24 1 -0.3633 0.5807 -0.8479 25 1 2.7360 2.4477 -6.8332 26 1 4.3826 0.4728 -1.0532 27 1 5.2285 0.1709 0.4834 28 1 3.7758 -0.7702 0.0670 29 1 3.4245 3.3728 1.0752 30 1 5.0233 2.5899 1.0720 31 1 4.1774 2.8922 -0.4644 32 1 2.6826 -0.0770 2.2285 33 1 4.1740 0.8054 2.6350 34 1 2.6068 1.6490 2.6571 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234792818.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:31 Heat of formation + Delta-G solvation = -32.080048 kcal Electronic energy + Delta-G solvation = -18023.558296 eV Core-core repulsion = 15151.112848 eV Total energy + Delta-G solvation = -2872.445448 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -45.04942 -40.04210 -36.90446 -36.05690 -35.29830 -32.41091 -28.92870 -28.48743 -28.24932 -27.98676 -26.65735 -23.61423 -22.78221 -20.40229 -19.40928 -17.95939 -17.44283 -17.41446 -16.93909 -16.52574 -16.02989 -15.14183 -15.03025 -14.59419 -14.51800 -13.76965 -13.55152 -13.43730 -13.14490 -13.06781 -12.83822 -12.57014 -12.50691 -12.19964 -12.05522 -11.97946 -11.75064 -11.70566 -11.56416 -11.28765 -10.94305 -10.87313 -10.26110 -8.95572 -7.07028 1.01120 1.39564 1.54220 1.59929 2.00362 2.14416 2.65678 3.01477 3.21474 3.47427 3.75765 3.84761 4.10434 4.19203 4.40017 4.40537 4.53400 4.60999 4.70137 4.73499 4.81009 4.90991 4.94325 5.01065 5.03396 5.12721 5.23182 5.40480 5.46715 5.59448 5.85879 6.05949 6.13394 6.33533 6.46560 8.07179 8.35385 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.038309 B = 0.006729 C = 0.006410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.728260 B = 4160.263435 C = 4367.434470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.380 6.380 3 C 0.200 3.800 4 H 0.082 0.918 5 C 0.153 3.847 6 N -0.469 5.469 7 O 0.008 5.992 8 C 0.272 3.728 9 C -0.439 4.439 10 H 0.120 0.880 11 C 0.030 3.970 12 N -0.798 5.798 13 Si 1.020 2.980 14 H -0.255 1.255 15 H -0.259 1.259 16 H -0.247 1.247 17 N -0.633 5.633 18 C -0.057 4.057 19 C -0.131 4.131 20 C -0.129 4.129 21 C -0.126 4.126 22 H 0.069 0.931 23 H 0.107 0.893 24 H 0.011 0.989 25 H 0.305 0.695 26 H 0.028 0.972 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.015 0.985 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.075 0.082 8.188 8.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.297 6.297 3 C 0.140 3.860 4 H 0.099 0.901 5 C -0.122 4.122 6 N -0.203 5.203 7 O -0.035 6.035 8 C 0.082 3.918 9 C -0.477 4.477 10 H 0.138 0.862 11 C -0.192 4.192 12 N -0.426 5.426 13 Si 0.836 3.164 14 H -0.179 1.179 15 H -0.183 1.183 16 H -0.170 1.170 17 N -0.379 5.379 18 C -0.058 4.058 19 C -0.188 4.188 20 C -0.187 4.187 21 C -0.183 4.183 22 H 0.087 0.913 23 H 0.125 0.875 24 H 0.030 0.970 25 H 0.116 0.884 26 H 0.047 0.953 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.034 0.966 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.184 -0.855 8.433 8.479 hybrid contribution -0.328 0.619 -1.180 1.372 sum -0.144 -0.236 7.254 7.259 Atomic orbital electron populations 1.22948 0.80112 1.03664 1.00100 1.87891 1.20887 1.26545 1.94414 1.20312 0.96646 0.84234 0.84794 0.90061 1.26114 0.98126 0.88666 0.99293 1.74287 1.29091 1.22282 0.94683 1.85489 1.66168 1.22789 1.29027 1.24810 0.89901 0.86417 0.90636 1.19089 1.42520 0.95467 0.90580 0.86203 1.27368 0.90397 1.00828 1.00606 1.69705 1.28865 1.24431 1.19557 0.84631 0.80350 0.75858 0.75513 1.17896 1.18305 1.17030 1.72214 1.36624 1.21351 1.07713 1.20628 0.91473 0.96531 0.97199 1.21725 0.99192 0.98485 0.99393 1.21742 1.01333 0.95457 1.00122 1.21751 1.03136 1.02072 0.91354 0.91260 0.87487 0.97000 0.88392 0.95326 0.90975 0.92552 0.91776 0.89849 0.96578 0.91811 0.90361 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 10.79 113.37 1.22 2.10 16 2 O -0.38 -14.59 8.95 -148.98 -1.33 -15.92 16 3 C 0.20 8.05 1.93 29.85 0.06 8.11 16 4 H 0.08 3.08 7.85 -2.39 -0.02 3.06 16 5 C 0.15 7.92 5.04 138.60 0.70 8.62 16 6 N -0.47 -26.91 10.49 -56.64 -0.59 -27.50 16 7 O 0.01 0.47 9.81 64.30 0.63 1.10 16 8 C 0.27 16.09 7.79 85.06 0.66 16.75 16 9 C -0.44 -23.78 9.48 23.32 0.22 -23.56 16 10 H 0.12 6.07 7.86 -2.91 -0.02 6.04 16 11 C 0.03 1.44 5.50 85.43 0.47 1.91 16 12 N -0.80 -41.62 12.11 21.91 0.27 -41.36 16 13 Si 1.02 35.20 29.57 68.60 2.03 37.23 16 14 H -0.25 -8.39 7.11 99.48 0.71 -7.68 16 15 H -0.26 -8.35 7.11 99.48 0.71 -7.64 16 16 H -0.25 -8.13 7.11 99.48 0.71 -7.42 16 17 N -0.63 -35.59 11.60 -305.25 -3.54 -39.13 16 18 C -0.06 -1.94 0.63 -52.18 -0.03 -1.97 16 19 C -0.13 -4.71 8.01 71.98 0.58 -4.13 16 20 C -0.13 -4.40 8.16 71.98 0.59 -3.81 16 21 C -0.13 -3.08 8.39 71.98 0.60 -2.47 16 22 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 23 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 24 H 0.01 0.42 8.08 -2.39 -0.02 0.40 16 25 H 0.30 13.87 8.29 -92.70 -0.77 13.10 16 26 H 0.03 1.25 6.20 -2.39 -0.01 1.24 16 27 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 28 H 0.06 2.03 7.57 -2.39 -0.02 2.01 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 31 H 0.01 0.66 7.08 -2.39 -0.02 0.64 16 32 H 0.06 1.55 7.75 -2.38 -0.02 1.53 16 33 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -68.50 287.23 3.61 -64.89 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 1.09 Total: 19.14 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 5.07 Total: 1.55 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -3.87 Total: -107.99 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.70 Total: -14.82 kcal Atomic # 14 Polarization: 35.20 SS G_CDS: 2.03 Total: 37.23 kcal Total: -68.50 3.61 -64.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234792818.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.811 kcal (2) G-P(sol) polarization free energy of solvation -68.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds