Wall clock time and date at job start Mon Mar 30 2020 03:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53006 * 109.46711 * 2 1 4 4 H 1.08996 * 109.47285 * 54.37833 * 3 2 1 5 5 C 1.50697 * 109.46466 * 174.37709 * 3 2 1 6 6 H 1.08005 * 120.00452 * 114.29003 * 5 3 2 7 7 C 1.37877 * 120.00351 * 294.28354 * 5 3 2 8 8 N 1.31516 * 119.99756 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00377 * 180.02562 * 7 5 3 10 10 H 1.48502 * 109.47032 * 90.00333 * 9 7 5 11 11 H 1.48500 * 109.47434 * 210.00288 * 9 7 5 12 12 H 1.48498 * 109.47048 * 330.00034 * 9 7 5 13 13 N 1.46900 * 109.46919 * 294.37188 * 3 2 1 14 14 C 1.47067 * 111.00186 * 301.02254 * 13 3 2 15 15 C 1.50654 * 109.24642 * 179.54787 * 14 13 3 16 16 O 1.21221 * 119.67236 * 208.86067 * 15 14 13 17 17 N 1.34455 * 120.65500 * 28.83060 * 15 14 13 18 18 C 1.34447 * 121.35887 * 359.50983 * 17 15 14 19 19 O 1.21233 * 119.67029 * 180.51242 * 18 17 15 20 20 C 1.47071 * 110.99369 * 177.88541 * 13 3 2 21 21 H 1.09002 * 109.50666 * 60.53082 * 20 13 3 22 22 C 1.52996 * 109.51375 * 300.38893 * 20 13 3 23 23 H 1.09003 * 109.46982 * 65.13321 * 1 2 3 24 24 H 1.08999 * 109.47184 * 185.13256 * 1 2 3 25 25 H 1.08998 * 109.46943 * 305.13552 * 1 2 3 26 26 H 1.08997 * 109.47239 * 239.99898 * 2 1 3 27 27 H 1.08998 * 109.46883 * 119.99614 * 2 1 3 28 28 H 0.97000 * 119.99947 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.50651 * 299.47297 * 14 13 3 30 30 H 1.08999 * 109.51183 * 59.61447 * 14 13 3 31 31 H 0.96999 * 119.32069 * 179.53178 * 17 15 14 32 32 H 1.09002 * 109.47166 * 60.81537 * 22 20 13 33 33 H 1.08997 * 109.47568 * 180.81756 * 22 20 13 34 34 H 1.09001 * 109.47165 * 300.81719 * 22 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5968 1.9846 0.8353 5 6 3.5405 1.4448 0.1392 6 1 4.1577 1.8023 -0.6719 7 6 4.1257 0.9906 1.3021 8 7 3.3744 0.5549 2.2896 9 14 5.9857 0.9940 1.4749 10 1 6.4268 2.2891 2.0524 11 1 6.4017 -0.1148 2.3709 12 1 6.6073 0.8103 0.1389 13 7 1.6643 2.0947 -1.2616 14 6 2.2259 1.3749 -2.4146 15 6 1.8082 2.0691 -3.6848 16 8 1.6875 1.4286 -4.7069 17 7 1.5673 3.3918 -3.6958 18 6 1.6807 4.1330 -2.5798 19 8 1.4472 5.3218 -2.6227 20 6 2.0951 3.5008 -1.2766 21 1 3.1794 3.5504 -1.1762 22 6 1.4387 4.2489 -0.1146 23 1 -0.3633 0.4322 -0.9324 24 1 -0.3633 -1.0235 0.0919 25 1 -0.3633 0.5914 0.8404 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 3.7860 0.2357 3.1079 29 1 3.3137 1.3678 -2.3446 30 1 1.8540 0.3504 -2.4205 31 1 1.3061 3.8201 -4.5260 32 1 1.7468 3.7975 0.8285 33 1 1.7470 5.2942 -0.1349 34 1 0.3545 4.1880 -0.2094 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251367244.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:43 Heat of formation + Delta-G solvation = -69.611827 kcal Electronic energy + Delta-G solvation = -18333.643322 eV Core-core repulsion = 15459.570374 eV Total energy + Delta-G solvation = -2874.072948 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.09316 -38.55075 -37.45374 -34.52235 -33.13792 -31.78933 -30.26671 -27.58486 -25.61969 -24.53636 -22.83909 -21.96862 -19.65469 -18.80473 -17.50485 -17.27836 -16.23052 -15.88978 -15.19241 -14.77232 -14.35548 -14.23862 -13.77332 -13.17925 -13.00343 -12.61098 -12.38734 -12.11185 -11.52093 -11.36532 -11.28044 -11.08919 -10.98079 -10.78166 -10.29756 -10.05062 -9.98431 -9.96120 -9.85957 -9.67827 -9.33191 -8.56144 -7.67551 -6.22286 -4.35923 1.82022 3.00367 3.12164 3.15871 3.24533 3.26316 4.23527 4.33278 4.49767 5.07081 5.07368 5.45259 5.74029 5.78411 6.01380 6.17013 6.21470 6.28143 6.28623 6.45344 6.47089 6.66884 6.79679 6.91933 7.00776 7.09925 7.32084 7.43085 7.52113 7.60279 7.79984 7.86708 8.08162 8.14420 8.70022 9.33532 10.79834 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.022425 B = 0.009212 C = 0.008621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.281965 B = 3038.845716 C = 3247.218819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.111 4.111 3 C 0.211 3.789 4 H 0.063 0.937 5 C -0.559 4.559 6 H 0.057 0.943 7 C 0.077 3.923 8 N -0.877 5.877 9 Si 0.887 3.113 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.520 5.520 14 C 0.028 3.972 15 C 0.533 3.467 16 O -0.518 6.518 17 N -0.677 5.677 18 C 0.535 3.465 19 O -0.512 6.512 20 C 0.064 3.936 21 H 0.096 0.904 22 C -0.126 4.126 23 H 0.045 0.955 24 H 0.029 0.971 25 H 0.044 0.956 26 H 0.037 0.963 27 H 0.088 0.912 28 H 0.265 0.735 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.403 0.597 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.266 2.415 -4.518 5.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.149 4.149 3 C 0.106 3.894 4 H 0.080 0.920 5 C -0.598 4.598 6 H 0.075 0.925 7 C -0.128 4.128 8 N -0.514 5.514 9 Si 0.715 3.285 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.248 5.248 14 C -0.102 4.102 15 C 0.323 3.677 16 O -0.391 6.391 17 N -0.341 5.341 18 C 0.324 3.676 19 O -0.384 6.384 20 C -0.048 4.048 21 H 0.113 0.887 22 C -0.183 4.183 23 H 0.064 0.936 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.106 0.894 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.141 0.859 31 H 0.241 0.759 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.911 2.509 -4.715 6.082 hybrid contribution 1.882 0.117 -0.219 1.898 sum -1.028 2.626 -4.934 5.683 Atomic orbital electron populations 1.21734 0.98355 0.98968 1.00776 1.21642 0.92731 0.98669 1.01901 1.19531 0.93846 0.91323 0.84701 0.91956 1.21571 0.92221 1.44731 1.01265 0.92534 1.24852 0.97960 0.94393 0.95573 1.69890 1.35088 1.41156 1.05279 0.86670 0.85747 0.77894 0.78206 1.20526 1.21049 1.19933 1.63282 1.56968 0.99621 1.04949 1.22492 1.01412 0.99816 0.86498 1.21508 0.73483 0.80956 0.91720 1.90718 1.48668 1.64534 1.35146 1.45112 1.64401 1.10820 1.13813 1.21487 0.73740 0.86581 0.85773 1.90700 1.46414 1.15411 1.85882 1.21795 1.01246 0.90948 0.90785 0.88686 1.21622 1.00453 0.99065 0.97210 0.93594 0.95165 0.93689 0.94426 0.89377 0.92512 0.89107 0.85857 0.75901 0.89735 0.91914 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.75 37.16 0.36 -2.16 16 2 C -0.11 -2.26 5.07 -26.72 -0.14 -2.39 16 3 C 0.21 4.38 1.34 -68.86 -0.09 4.29 16 4 H 0.06 1.43 6.21 -51.93 -0.32 1.11 16 5 C -0.56 -12.79 6.97 -34.44 -0.24 -13.03 16 6 H 0.06 1.28 5.78 -52.48 -0.30 0.98 16 7 C 0.08 1.85 5.30 -17.82 -0.09 1.76 16 8 N -0.88 -22.13 11.74 55.43 0.65 -21.48 16 9 Si 0.89 19.19 29.54 -169.99 -5.02 14.17 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 13 N -0.52 -9.36 4.15 -222.68 -0.92 -10.28 16 14 C 0.03 0.48 4.91 -4.91 -0.02 0.46 16 15 C 0.53 8.81 7.88 -11.15 -0.09 8.72 16 16 O -0.52 -9.56 17.90 5.61 0.10 -9.46 16 17 N -0.68 -10.29 5.16 -11.57 -0.06 -10.35 16 18 C 0.53 8.87 7.57 -11.15 -0.08 8.78 16 19 O -0.51 -9.33 16.97 5.60 0.09 -9.24 16 20 C 0.06 1.10 2.31 -68.79 -0.16 0.94 16 21 H 0.10 1.71 6.74 -51.93 -0.35 1.36 16 22 C -0.13 -2.08 8.54 37.16 0.32 -1.77 16 23 H 0.04 0.79 7.91 -51.93 -0.41 0.38 16 24 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.04 0.74 6.08 -51.93 -0.32 0.42 16 27 H 0.09 2.04 6.43 -51.93 -0.33 1.71 16 28 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 29 H 0.09 1.59 6.45 -51.93 -0.33 1.25 16 30 H 0.12 2.10 6.15 -51.93 -0.32 1.78 16 31 H 0.40 5.39 8.84 -40.82 -0.36 5.02 16 32 H 0.08 1.51 6.40 -51.93 -0.33 1.18 16 33 H 0.06 0.98 7.82 -51.93 -0.41 0.57 16 34 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 273.97 15.07 4.13 4.13 Total: -1.00 -25.66 273.97 -5.46 -31.12 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -4.19 Total: 5.82 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: -0.24 Total: 5.59 kcal Atomic # 7 Polarization: -41.79 SS G_CDS: -0.33 Total: -42.12 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.20 Total: -18.70 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -25.66 -5.46 -31.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251367244.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.496 kcal (2) G-P(sol) polarization free energy of solvation -25.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds