Wall clock time and date at job start Mon Mar 30 2020 04:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29508 * 119.99505 * 2 1 4 4 O 1.41596 * 119.99959 * 0.02562 * 3 2 1 5 5 C 1.46921 * 119.99806 * 179.97438 * 2 1 3 6 6 N 1.29501 * 120.00571 * 359.61819 * 5 2 1 7 7 O 1.41604 * 119.99993 * 354.29043 * 6 5 2 8 8 C 1.50703 * 119.99357 * 179.62073 * 5 2 1 9 9 H 1.08999 * 115.56630 * 330.68497 * 8 5 2 10 10 C 1.53006 * 117.49788 * 116.38048 * 8 5 2 11 11 H 1.09001 * 117.51428 * 214.96983 * 10 8 5 12 12 C 1.50695 * 117.49601 * 359.97438 * 10 8 5 13 13 H 1.07995 * 120.00431 * 338.90515 * 12 10 8 14 14 C 1.37884 * 119.99523 * 158.90664 * 12 10 8 15 15 N 1.31512 * 120.00041 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 119.99813 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47326 * 59.99529 * 16 14 12 18 18 H 1.48504 * 109.47181 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46992 * 299.99882 * 16 14 12 20 20 C 1.53002 * 59.99898 * 107.48712 * 10 8 5 21 21 C 1.53000 * 117.49908 * 107.49058 * 20 10 8 22 22 C 1.53000 * 117.49637 * 252.50794 * 20 10 8 23 23 H 1.09007 * 109.47190 * 242.33171 * 1 2 3 24 24 H 1.08995 * 109.47282 * 2.33276 * 1 2 3 25 25 H 1.09005 * 109.47066 * 122.33558 * 1 2 3 26 26 H 0.96708 * 113.99490 * 180.02562 * 4 3 2 27 27 H 0.96696 * 114.00048 * 179.97438 * 7 6 5 28 28 H 0.96999 * 119.99507 * 180.02562 * 15 14 12 29 29 H 1.08999 * 109.46840 * 111.38903 * 21 20 10 30 30 H 1.08999 * 109.47182 * 231.38676 * 21 20 10 31 31 H 1.08993 * 109.47104 * 351.39082 * 21 20 10 32 32 H 1.08999 * 109.47208 * 30.89017 * 22 20 10 33 33 H 1.08999 * 109.47219 * 150.88801 * 22 20 10 34 34 H 1.08996 * 109.47493 * 270.88863 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1545 1.1216 0.0000 4 8 1.4464 2.3478 0.0005 5 6 2.2416 -1.2724 0.0006 6 7 1.5942 -2.3939 0.0085 7 8 0.1842 -2.3966 0.1387 8 6 3.7486 -1.2723 -0.0081 9 1 4.2162 -0.4167 -0.4954 10 6 4.4621 -1.8707 1.2060 11 1 5.3990 -1.4090 1.5176 12 6 3.6040 -2.4145 2.3190 13 1 2.5802 -2.0865 2.4212 14 6 4.1261 -3.3310 3.2070 15 7 5.3728 -3.7309 3.0823 16 14 3.0623 -4.0058 4.5864 17 1 1.8826 -4.6981 4.0083 18 1 3.8531 -4.9667 5.3966 19 1 2.6057 -2.8882 5.4512 20 6 4.4544 -2.6247 -0.1253 21 6 5.7625 -2.6726 -0.9176 22 6 3.5763 -3.8736 -0.2248 23 1 -0.3634 -0.4772 0.9102 24 1 -0.3633 1.0268 -0.0418 25 1 -0.3633 -0.5497 -0.8683 26 1 2.0148 3.1302 0.0001 27 1 -0.2096 -3.2797 0.1339 28 1 5.7399 -4.3760 3.7069 29 1 6.1501 -3.6913 -0.9177 30 1 5.5777 -2.3540 -1.9435 31 1 6.4914 -2.0066 -0.4560 32 1 2.7058 -3.7581 0.4210 33 1 3.2486 -4.0062 -1.2559 34 1 4.1487 -4.7463 0.0896 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254867718.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:03 Heat of formation + Delta-G solvation = 50.694405 kcal Electronic energy + Delta-G solvation = -17889.107306 eV Core-core repulsion = 15020.251227 eV Total energy + Delta-G solvation = -2868.856078 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.69943 -36.94345 -35.99972 -33.80460 -32.26562 -31.15694 -28.51734 -27.79461 -26.51086 -25.30933 -23.23908 -20.51399 -18.67652 -17.82094 -17.04850 -16.55695 -16.01437 -14.91204 -14.71835 -14.34298 -14.23240 -13.71312 -13.04132 -12.89009 -12.60194 -12.23555 -12.09738 -12.00372 -11.71820 -11.27768 -11.08616 -10.89326 -10.84732 -10.66594 -10.23808 -10.15634 -9.70672 -9.37884 -8.98584 -8.81848 -8.69404 -8.02070 -7.98241 -6.04474 -4.04576 1.47482 3.21464 3.23391 3.31154 3.35689 3.38997 3.71946 4.40887 4.61840 5.07368 5.34759 5.45269 5.85321 5.95930 5.98468 6.12191 6.14494 6.27501 6.38093 6.46077 6.57233 6.59302 6.82897 6.86024 7.11456 7.18455 7.28928 7.34870 7.57546 7.82250 7.90482 7.95164 8.25869 8.36898 8.92054 9.56441 11.05940 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.019885 B = 0.009509 C = 0.008339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.782694 B = 2943.999280 C = 3356.890611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.140 3.860 3 N -0.306 5.306 4 O -0.418 6.418 5 C 0.233 3.767 6 N -0.271 5.271 7 O -0.426 6.426 8 C -0.144 4.144 9 H 0.107 0.893 10 C 0.072 3.928 11 H 0.072 0.928 12 C -0.490 4.490 13 H 0.057 0.943 14 C 0.074 3.926 15 N -0.880 5.880 16 Si 0.887 3.113 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.278 1.278 20 C -0.124 4.124 21 C -0.103 4.103 22 C -0.098 4.098 23 H 0.089 0.911 24 H 0.067 0.933 25 H 0.083 0.917 26 H 0.400 0.600 27 H 0.390 0.610 28 H 0.261 0.739 29 H 0.052 0.948 30 H 0.037 0.963 31 H 0.048 0.952 32 H 0.103 0.897 33 H 0.021 0.979 34 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.776 4.236 -6.629 9.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.052 4.052 3 N -0.053 5.053 4 O -0.325 6.325 5 C 0.044 3.956 6 N -0.019 5.019 7 O -0.330 6.330 8 C -0.164 4.164 9 H 0.125 0.875 10 C 0.052 3.948 11 H 0.090 0.910 12 C -0.527 4.527 13 H 0.075 0.925 14 C -0.129 4.129 15 N -0.516 5.516 16 Si 0.715 3.285 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.125 4.125 21 C -0.161 4.161 22 C -0.155 4.155 23 H 0.107 0.893 24 H 0.086 0.914 25 H 0.102 0.898 26 H 0.248 0.752 27 H 0.238 0.762 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.120 0.880 33 H 0.040 0.960 34 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -5.201 3.833 -6.576 9.219 hybrid contribution -1.382 0.213 0.765 1.594 sum -6.584 4.046 -5.811 9.669 Atomic orbital electron populations 1.21233 0.90772 1.02399 1.04641 1.24245 0.95339 0.91928 0.93690 1.76829 1.23131 0.91587 1.13751 1.88364 1.35204 1.13518 1.95388 1.22683 0.95055 0.84856 0.93029 1.77582 0.89019 1.21395 1.13939 1.88593 1.15835 1.34170 1.94416 1.21295 0.84756 0.98741 1.11615 0.87493 1.20155 0.95385 0.93687 0.85582 0.91044 1.20407 0.97439 1.24353 1.10537 0.92535 1.24880 0.94819 0.96082 0.97144 1.69965 1.13320 1.31497 1.36861 0.86735 0.80605 0.78908 0.82256 1.20129 1.21252 1.20335 1.21663 0.95545 0.90330 1.04972 1.21218 0.96006 1.01185 0.97643 1.21507 1.00175 0.94667 0.99108 0.89265 0.91403 0.89827 0.75210 0.76208 0.92919 0.92845 0.94403 0.93259 0.87953 0.96012 0.94272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.14 8.21 36.01 0.30 -1.84 16 2 C 0.14 2.64 7.11 -80.06 -0.57 2.08 16 3 N -0.31 -5.61 11.44 34.95 0.40 -5.21 16 4 O -0.42 -6.34 13.47 -11.47 -0.15 -6.49 16 5 C 0.23 4.75 5.57 -80.06 -0.45 4.30 16 6 N -0.27 -5.34 7.18 34.95 0.25 -5.09 16 7 O -0.43 -6.89 10.52 -11.47 -0.12 -7.01 16 8 C -0.14 -3.06 5.47 -91.77 -0.50 -3.56 16 9 H 0.11 2.13 7.93 -51.93 -0.41 1.72 16 10 C 0.07 1.76 5.11 -91.77 -0.47 1.29 16 11 H 0.07 1.85 8.05 -51.93 -0.42 1.43 16 12 C -0.49 -13.02 6.81 -34.44 -0.23 -13.26 16 13 H 0.06 1.54 6.89 -52.49 -0.36 1.18 16 14 C 0.07 2.00 5.46 -17.82 -0.10 1.91 16 15 N -0.88 -24.67 13.29 55.43 0.74 -23.93 16 16 Si 0.89 21.13 29.54 -169.99 -5.02 16.10 16 17 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 20 C -0.12 -2.70 2.70 -154.51 -0.42 -3.11 16 21 C -0.10 -1.97 9.85 37.16 0.37 -1.60 16 22 C -0.10 -2.11 7.95 37.16 0.30 -1.82 16 23 H 0.09 1.47 7.09 -51.92 -0.37 1.10 16 24 H 0.07 1.05 6.78 -51.93 -0.35 0.70 16 25 H 0.08 1.27 7.22 -51.93 -0.37 0.89 16 26 H 0.40 3.99 9.28 45.56 0.42 4.41 16 27 H 0.39 4.60 9.28 45.56 0.42 5.02 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.05 1.00 8.09 -51.93 -0.42 0.58 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.92 7.90 -51.93 -0.41 0.51 16 32 H 0.10 2.34 4.16 -52.05 -0.22 2.13 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 286.39 15.07 4.32 4.32 Total: -1.00 -30.34 286.39 -4.26 -34.60 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -2.89 Total: 8.34 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -1.78 Total: -15.62 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 1.39 Total: -34.24 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.28 Total: -13.51 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.34 -4.26 -34.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254867718.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.295 kcal (2) G-P(sol) polarization free energy of solvation -30.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds