Wall clock time and date at job start Mon Mar 30 2020 04:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29506 * 120.00005 * 2 1 4 4 O 1.41605 * 119.99914 * 0.02562 * 3 2 1 5 5 C 1.46921 * 120.00204 * 180.02562 * 2 1 3 6 6 N 1.29507 * 119.99800 * 353.89089 * 5 2 1 7 7 O 1.41593 * 120.00262 * 352.85165 * 6 5 2 8 8 C 1.50701 * 120.00189 * 173.89509 * 5 2 1 9 9 H 1.09001 * 115.55950 * 29.29974 * 8 5 2 10 10 C 1.52998 * 117.49808 * 243.60669 * 8 5 2 11 11 H 1.08998 * 117.51771 * 359.97438 * 10 8 5 12 12 C 1.50701 * 117.49593 * 145.02037 * 10 8 5 13 13 H 1.08005 * 119.99923 * 69.79834 * 12 10 8 14 14 C 1.37874 * 119.99832 * 249.78957 * 12 10 8 15 15 N 1.31512 * 120.00240 * 0.02562 * 14 12 10 16 16 Si 1.86808 * 119.99926 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46913 * 180.02562 * 16 14 12 18 18 H 1.48493 * 109.47210 * 300.00611 * 16 14 12 19 19 H 1.48503 * 109.46921 * 60.00597 * 16 14 12 20 20 C 1.53000 * 117.49798 * 174.98443 * 8 5 2 21 21 C 1.52998 * 117.50349 * 359.97438 * 20 8 5 22 22 C 1.52999 * 117.51743 * 214.97095 * 20 8 5 23 23 H 1.09000 * 109.46952 * 264.10734 * 1 2 3 24 24 H 1.08996 * 109.46914 * 24.10648 * 1 2 3 25 25 H 1.08991 * 109.46884 * 144.11323 * 1 2 3 26 26 H 0.96702 * 113.99906 * 180.02562 * 4 3 2 27 27 H 0.96704 * 114.00158 * 180.02562 * 7 6 5 28 28 H 0.96998 * 119.99959 * 359.97438 * 15 14 12 29 29 H 1.08991 * 109.47517 * 180.02562 * 21 20 8 30 30 H 1.09007 * 109.46994 * 300.01729 * 21 20 8 31 31 H 1.09003 * 109.46811 * 60.01067 * 21 20 8 32 32 H 1.09002 * 109.47344 * 350.48753 * 22 20 8 33 33 H 1.08998 * 109.47390 * 110.48561 * 22 20 8 34 34 H 1.09006 * 109.47413 * 230.48579 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1546 1.1216 0.0000 4 8 1.4465 2.3479 0.0005 5 6 2.2417 -1.2723 -0.0006 6 7 1.5997 -2.3908 0.1183 7 8 0.2121 -2.3841 0.4000 8 6 3.7423 -1.2760 -0.1394 9 1 4.2528 -0.3954 0.2506 10 6 4.3352 -1.9442 -1.3814 11 1 3.6403 -2.3817 -2.0981 12 6 5.5804 -1.3345 -1.9721 13 1 6.5188 -1.4025 -1.4417 14 6 5.5217 -0.6902 -3.1896 15 7 4.3789 -0.6072 -3.8352 16 14 7.0650 0.0662 -3.9214 17 1 6.7371 0.6954 -5.2260 18 1 7.5981 1.0972 -2.9952 19 1 8.0865 -0.9923 -4.1248 20 6 4.4600 -2.6215 -0.0152 21 6 3.5994 -3.8603 0.2411 22 6 5.8394 -2.6284 0.6466 23 1 -0.3633 -0.1055 1.0222 24 1 -0.3633 0.9380 -0.4197 25 1 -0.3633 -0.8325 -0.6024 26 1 2.0149 3.1302 0.0001 27 1 -0.1792 -3.2657 0.4708 28 1 3.5775 -0.9996 -3.4550 29 1 4.2394 -4.7401 0.3068 30 1 3.0544 -3.7368 1.1770 31 1 2.8911 -3.9863 -0.5779 32 1 6.1798 -1.6026 0.7879 33 1 5.7759 -3.1266 1.6140 34 1 6.5455 -3.1610 0.0093 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254867724.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:11 Heat of formation + Delta-G solvation = 41.400569 kcal Electronic energy + Delta-G solvation = -17686.769355 eV Core-core repulsion = 14817.510265 eV Total energy + Delta-G solvation = -2869.259089 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.77554 -37.03336 -36.18320 -33.89517 -32.63543 -31.27460 -28.50720 -27.83511 -26.70821 -25.07187 -23.19710 -20.77700 -18.96138 -18.06818 -17.13280 -16.55261 -16.40294 -15.04049 -14.65211 -14.40933 -13.98467 -13.81880 -13.27119 -13.12750 -12.82772 -12.31001 -12.17474 -11.99881 -11.74647 -11.42754 -11.24332 -10.97929 -10.78862 -10.69985 -10.43954 -10.15032 -9.69283 -9.51819 -9.26206 -8.87002 -8.63886 -8.26573 -8.09708 -6.48159 -4.13834 1.37569 3.09996 3.21996 3.40407 3.41559 3.53618 3.60287 4.43708 4.55038 4.91400 5.33088 5.44951 5.75399 5.80021 5.83048 5.95030 6.06140 6.12057 6.33427 6.36620 6.40842 6.46535 6.63860 6.79222 6.81783 6.87477 6.96118 7.18676 7.25873 7.32575 7.85666 8.06834 8.15020 8.34672 8.74194 9.54224 10.90479 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.019186 B = 0.009277 C = 0.007242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.038220 B = 3017.555400 C = 3865.262222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.127 3.873 3 N -0.290 5.290 4 O -0.413 6.413 5 C 0.233 3.767 6 N -0.315 5.315 7 O -0.419 6.419 8 C -0.146 4.146 9 H 0.120 0.880 10 C 0.051 3.949 11 H 0.066 0.934 12 C -0.566 4.566 13 H 0.062 0.938 14 C 0.026 3.974 15 N -0.895 5.895 16 Si 1.069 2.931 17 H -0.282 1.282 18 H -0.286 1.286 19 H -0.285 1.285 20 C -0.134 4.134 21 C -0.093 4.093 22 C -0.095 4.095 23 H 0.079 0.921 24 H 0.068 0.932 25 H 0.092 0.908 26 H 0.403 0.597 27 H 0.388 0.612 28 H 0.271 0.729 29 H 0.040 0.960 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.037 0.963 34 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.529 -1.152 7.796 9.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.065 4.065 3 N -0.035 5.035 4 O -0.322 6.322 5 C 0.045 3.955 6 N -0.064 5.064 7 O -0.323 6.323 8 C -0.167 4.167 9 H 0.138 0.862 10 C 0.031 3.969 11 H 0.084 0.916 12 C -0.602 4.602 13 H 0.080 0.920 14 C -0.181 4.181 15 N -0.528 5.528 16 Si 0.896 3.104 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.135 4.135 21 C -0.150 4.150 22 C -0.152 4.152 23 H 0.097 0.903 24 H 0.087 0.913 25 H 0.110 0.890 26 H 0.251 0.749 27 H 0.236 0.764 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.534 -0.581 6.458 7.384 hybrid contribution -1.686 -0.095 1.494 2.255 sum -5.220 -0.676 7.952 9.536 Atomic orbital electron populations 1.21285 0.90696 1.03479 1.03686 1.24103 0.95234 0.91898 0.95255 1.76878 1.23206 0.91660 1.11777 1.88354 1.35251 1.13511 1.95075 1.23093 0.95499 0.85184 0.91691 1.77344 0.90319 1.22333 1.16380 1.88627 1.18037 1.33853 1.91789 1.21826 0.83505 0.97591 1.13771 0.86184 1.20275 0.96834 0.94565 0.85238 0.91560 1.21554 0.93663 1.38494 1.06538 0.92019 1.25936 1.02953 0.95021 0.94182 1.70772 1.00281 1.41187 1.40603 0.83548 0.74050 0.76428 0.76358 1.20733 1.21197 1.21181 1.21549 0.95702 0.91165 1.05119 1.21311 0.97538 0.94765 1.01395 1.21103 0.94924 1.01296 0.97859 0.90293 0.91301 0.88952 0.74908 0.76429 0.91772 0.94144 0.93259 0.92104 0.92746 0.94414 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.23 8.16 36.01 0.29 -1.93 16 2 C 0.13 2.53 7.08 -80.06 -0.57 1.96 16 3 N -0.29 -5.84 11.41 34.95 0.40 -5.44 16 4 O -0.41 -6.96 13.64 -11.47 -0.16 -7.12 16 5 C 0.23 4.77 6.76 -80.06 -0.54 4.23 16 6 N -0.31 -5.79 7.78 34.95 0.27 -5.52 16 7 O -0.42 -6.24 10.64 -11.47 -0.12 -6.37 16 8 C -0.15 -3.23 5.14 -91.77 -0.47 -3.70 16 9 H 0.12 2.78 7.78 -51.93 -0.40 2.37 16 10 C 0.05 1.26 4.58 -91.77 -0.42 0.84 16 11 H 0.07 1.76 7.03 -51.93 -0.36 1.39 16 12 C -0.57 -15.09 8.75 -34.44 -0.30 -15.39 16 13 H 0.06 1.60 6.60 -52.48 -0.35 1.26 16 14 C 0.03 0.71 5.46 -17.82 -0.10 0.62 16 15 N -0.89 -26.41 13.65 55.43 0.76 -25.65 16 16 Si 1.07 24.28 29.90 -169.99 -5.08 19.19 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 20 C -0.13 -2.78 2.70 -154.51 -0.42 -3.20 16 21 C -0.09 -1.69 8.00 37.16 0.30 -1.39 16 22 C -0.09 -1.78 8.39 37.16 0.31 -1.47 16 23 H 0.08 1.22 7.98 -51.93 -0.41 0.81 16 24 H 0.07 1.14 7.17 -51.93 -0.37 0.77 16 25 H 0.09 1.52 6.16 -51.93 -0.32 1.20 16 26 H 0.40 4.80 9.28 45.56 0.42 5.22 16 27 H 0.39 3.89 9.28 45.56 0.42 4.31 16 28 H 0.27 8.09 6.82 -40.82 -0.28 7.81 16 29 H 0.04 0.67 8.09 -51.93 -0.42 0.25 16 30 H 0.05 0.86 7.28 -51.92 -0.38 0.48 16 31 H 0.06 1.15 6.73 -51.93 -0.35 0.80 16 32 H 0.05 1.04 7.74 -51.93 -0.40 0.64 16 33 H 0.04 0.61 8.09 -51.93 -0.42 0.19 16 34 H 0.06 1.09 8.02 -51.93 -0.42 0.67 16 LS Contribution 287.40 15.07 4.33 4.33 Total: -1.00 -31.14 287.40 -4.35 -35.50 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -2.83 Total: 10.52 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -1.91 Total: -19.44 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 1.43 Total: -36.62 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: -0.28 Total: -13.48 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -5.08 Total: 19.19 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -31.14 -4.35 -35.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254867724.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.896 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.495 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds