Wall clock time and date at job start Mon Mar 30 2020 04:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.29503 * 120.00307 * 2 1 4 4 O 1.41608 * 119.99690 * 359.97438 * 3 2 1 5 5 C 1.46924 * 119.99808 * 179.97438 * 2 1 3 6 6 N 1.29506 * 120.00129 * 359.95882 * 5 2 1 7 7 O 1.41601 * 119.99777 * 353.84190 * 6 5 2 8 8 C 1.50698 * 119.99769 * 179.97438 * 5 2 1 9 9 H 1.09002 * 115.55490 * 29.41819 * 8 5 2 10 10 C 1.53003 * 117.49557 * 243.74836 * 8 5 2 11 11 H 1.09004 * 117.49649 * 145.00536 * 10 8 5 12 12 C 1.50699 * 117.50148 * 359.97438 * 10 8 5 13 13 H 1.07995 * 119.99966 * 294.87013 * 12 10 8 14 14 C 1.37879 * 119.99634 * 114.87040 * 12 10 8 15 15 N 1.31509 * 120.00301 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99952 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47229 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47552 * 119.99384 * 16 14 12 19 19 H 1.48500 * 109.46927 * 239.99549 * 16 14 12 20 20 C 1.53008 * 117.49551 * 175.09110 * 8 5 2 21 21 C 1.52999 * 117.49421 * 215.00023 * 20 8 5 22 22 C 1.52993 * 117.49895 * 359.97438 * 20 8 5 23 23 H 1.08994 * 109.46981 * 240.99834 * 1 2 3 24 24 H 1.09000 * 109.46665 * 1.00246 * 1 2 3 25 25 H 1.08999 * 109.46822 * 120.99928 * 1 2 3 26 26 H 0.96701 * 113.99534 * 180.02562 * 4 3 2 27 27 H 0.96705 * 113.99606 * 179.97438 * 7 6 5 28 28 H 0.96999 * 120.00426 * 180.02562 * 15 14 12 29 29 H 1.08999 * 109.47269 * 60.00466 * 21 20 8 30 30 H 1.09005 * 109.46996 * 179.97438 * 21 20 8 31 31 H 1.09003 * 109.47721 * 299.99879 * 21 20 8 32 32 H 1.08994 * 109.47389 * 56.77049 * 22 20 8 33 33 H 1.09011 * 109.46908 * 176.76303 * 22 20 8 34 34 H 1.08992 * 109.47177 * 296.76316 * 22 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1546 1.1215 0.0000 4 8 1.4466 2.3479 -0.0005 5 6 2.2416 -1.2724 0.0006 6 7 1.5941 -2.3940 0.0019 7 8 0.1843 -2.3973 0.1343 8 6 3.7486 -1.2724 0.0000 9 1 4.2190 -0.4155 0.4822 10 6 4.4545 -1.8735 -1.2171 11 1 5.3894 -1.4121 -1.5355 12 6 3.5897 -2.4208 -2.3232 13 1 2.9582 -3.2777 -2.1411 14 6 3.6047 -1.8274 -3.5677 15 7 4.3734 -0.7836 -3.7893 16 14 2.5322 -2.5053 -4.9387 17 1 1.7667 -3.6744 -4.4362 18 1 1.5879 -1.4538 -5.3945 19 1 3.3897 -2.9271 -6.0754 20 6 4.4551 -2.6246 0.1168 21 6 5.7677 -2.6703 0.9016 22 6 3.5775 -3.8730 0.2258 23 1 -0.3633 -0.4982 0.8988 24 1 -0.3633 1.0275 -0.0180 25 1 -0.3633 -0.5293 -0.8809 26 1 2.0151 3.1301 -0.0009 27 1 -0.2096 -3.2805 0.1240 28 1 4.3837 -0.3659 -4.6647 29 1 5.5888 -2.3493 1.9278 30 1 6.1552 -3.6892 0.9024 31 1 6.4940 -2.0054 0.4342 32 1 2.9071 -3.9220 -0.6322 33 1 4.2096 -4.7610 0.2441 34 1 2.9908 -3.8257 1.1431 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254867726.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:14 Heat of formation + Delta-G solvation = 48.647148 kcal Electronic energy + Delta-G solvation = -17938.417210 eV Core-core repulsion = 15069.472356 eV Total energy + Delta-G solvation = -2868.944854 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.59351 -36.85742 -35.91114 -33.67458 -32.42014 -31.04547 -28.44926 -27.66926 -26.83058 -25.31341 -23.16481 -20.48543 -18.61806 -17.72554 -16.90951 -16.41580 -16.09484 -14.84142 -14.66584 -14.31957 -14.17218 -13.61816 -13.14030 -12.81438 -12.72167 -12.11803 -12.07269 -11.95088 -11.73864 -11.37531 -11.14915 -10.99214 -10.76572 -10.63601 -10.33706 -10.04980 -9.55610 -9.35060 -9.06959 -8.95879 -8.56510 -8.16876 -7.95073 -6.13378 -4.10235 1.65502 3.23626 3.32196 3.33449 3.37062 3.50574 3.80605 4.35689 4.69727 5.01650 5.37735 5.56220 5.88508 5.95421 5.97937 6.10844 6.20216 6.31708 6.40430 6.55254 6.56858 6.59582 6.64383 6.87602 6.96889 7.05975 7.09768 7.40651 7.50698 7.59457 7.90015 8.03561 8.35594 8.40669 8.94597 9.49667 10.96605 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.015353 B = 0.011513 C = 0.009435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.345553 B = 2431.526696 C = 2966.911049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.139 3.861 3 N -0.299 5.299 4 O -0.419 6.419 5 C 0.252 3.748 6 N -0.293 5.293 7 O -0.426 6.426 8 C -0.147 4.147 9 H 0.106 0.894 10 C 0.069 3.931 11 H 0.088 0.912 12 C -0.487 4.487 13 H 0.073 0.927 14 C 0.069 3.931 15 N -0.879 5.879 16 Si 0.889 3.111 17 H -0.270 1.270 18 H -0.285 1.285 19 H -0.282 1.282 20 C -0.148 4.148 21 C -0.106 4.106 22 C -0.097 4.097 23 H 0.085 0.915 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.399 0.601 27 H 0.387 0.613 28 H 0.262 0.738 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.032 0.968 34 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.901 -0.413 7.506 8.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.053 4.053 3 N -0.046 5.046 4 O -0.326 6.326 5 C 0.063 3.937 6 N -0.042 5.042 7 O -0.329 6.329 8 C -0.168 4.168 9 H 0.124 0.876 10 C 0.049 3.951 11 H 0.106 0.894 12 C -0.524 4.524 13 H 0.091 0.909 14 C -0.135 4.135 15 N -0.515 5.515 16 Si 0.717 3.283 17 H -0.194 1.194 18 H -0.211 1.211 19 H -0.207 1.207 20 C -0.149 4.149 21 C -0.163 4.163 22 C -0.154 4.154 23 H 0.104 0.896 24 H 0.085 0.915 25 H 0.103 0.897 26 H 0.247 0.753 27 H 0.234 0.766 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.105 0.895 33 H 0.051 0.949 34 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.415 -0.553 7.336 8.111 hybrid contribution -1.529 0.541 -0.808 1.812 sum -4.945 -0.012 6.528 8.189 Atomic orbital electron populations 1.21212 0.90994 1.02306 1.04399 1.24185 0.95157 0.92028 0.93954 1.76875 1.22936 0.91503 1.13335 1.88345 1.35271 1.13613 1.95389 1.22478 0.94842 0.84713 0.91652 1.77392 0.88927 1.22256 1.15623 1.88601 1.16069 1.33864 1.94400 1.21431 0.85004 0.96919 1.13398 0.87642 1.20282 0.96658 0.93369 0.84792 0.89436 1.20817 1.23745 1.14047 0.93781 0.90931 1.25051 0.95158 0.94637 0.98642 1.69965 1.37938 1.20772 1.22869 0.86573 0.80535 0.79162 0.82078 1.19426 1.21078 1.20749 1.21655 0.96328 0.91506 1.05435 1.21265 0.95724 1.00900 0.98390 1.21389 0.98009 0.93734 1.02235 0.89647 0.91515 0.89743 0.75287 0.76601 0.92822 0.93912 0.92989 0.92995 0.89490 0.94929 0.94295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.33 8.22 36.01 0.30 -2.03 16 2 C 0.14 2.88 7.11 -80.06 -0.57 2.31 16 3 N -0.30 -6.16 11.44 34.96 0.40 -5.76 16 4 O -0.42 -7.22 13.47 -11.47 -0.15 -7.37 16 5 C 0.25 5.42 5.95 -80.06 -0.48 4.95 16 6 N -0.29 -5.89 7.30 34.95 0.26 -5.63 16 7 O -0.43 -7.07 10.52 -11.47 -0.12 -7.19 16 8 C -0.15 -3.22 5.47 -91.77 -0.50 -3.72 16 9 H 0.11 2.26 7.92 -51.93 -0.41 1.85 16 10 C 0.07 1.69 5.27 -91.73 -0.48 1.21 16 11 H 0.09 2.30 7.73 -51.93 -0.40 1.90 16 12 C -0.49 -12.87 7.44 -34.44 -0.26 -13.13 16 13 H 0.07 1.91 5.48 -52.49 -0.29 1.63 16 14 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 15 N -0.88 -25.09 13.07 55.43 0.72 -24.37 16 16 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C -0.15 -3.04 2.70 -154.47 -0.42 -3.46 16 21 C -0.11 -1.82 9.85 37.16 0.37 -1.46 16 22 C -0.10 -1.88 7.84 37.15 0.29 -1.59 16 23 H 0.09 1.40 7.01 -51.93 -0.36 1.04 16 24 H 0.07 1.15 6.78 -51.93 -0.35 0.79 16 25 H 0.08 1.54 7.30 -51.93 -0.38 1.16 16 26 H 0.40 4.82 9.28 45.56 0.42 5.25 16 27 H 0.39 4.61 9.28 45.56 0.42 5.03 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.82 7.96 -51.93 -0.41 0.41 16 31 H 0.05 0.88 7.90 -51.93 -0.41 0.47 16 32 H 0.09 1.86 4.01 -51.93 -0.21 1.65 16 33 H 0.03 0.58 7.98 -51.92 -0.41 0.16 16 34 H 0.04 0.71 7.47 -51.93 -0.39 0.33 16 LS Contribution 284.52 15.07 4.29 4.29 Total: -1.00 -30.68 284.52 -4.22 -34.90 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: -2.74 Total: 10.06 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -1.85 Total: -15.14 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: 1.38 Total: -35.76 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.28 Total: -14.56 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.68 -4.22 -34.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254867726.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.543 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds