Wall clock time and date at job start Mon Mar 30 2020 04:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47024 * 2 1 4 4 C 1.52997 * 109.47236 * 120.00477 * 2 1 3 5 5 C 1.50701 * 109.47212 * 64.99766 * 4 2 1 6 6 N 1.29438 * 119.60045 * 0.02562 * 5 4 2 7 7 N 1.40225 * 120.31368 * 180.02562 * 6 5 4 8 8 C 1.36837 * 120.48784 * 196.40086 * 7 6 5 9 9 H 1.08005 * 119.99655 * 180.02562 * 8 7 6 10 10 C 1.38818 * 120.00364 * 359.97438 * 8 7 6 11 11 N 1.31468 * 119.99986 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99968 * 180.02562 * 10 8 7 13 13 H 1.48490 * 109.47176 * 60.00270 * 12 10 8 14 14 H 1.48500 * 109.47094 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46961 * 300.00063 * 12 10 8 16 16 C 1.35245 * 119.01743 * 16.37117 * 7 6 5 17 17 O 1.21300 * 120.77857 * 180.28630 * 16 7 6 18 18 C 1.51095 * 118.44552 * 0.31139 * 16 7 6 19 19 H 1.09002 * 109.61502 * 90.47843 * 18 16 7 20 20 C 1.52998 * 109.61708 * 211.00893 * 18 16 7 21 21 O 1.35118 * 119.59809 * 179.72215 * 5 4 2 22 22 H 1.09001 * 109.46917 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.46741 * 299.99412 * 1 2 3 24 24 H 1.09000 * 109.47403 * 59.99547 * 1 2 3 25 25 H 1.09004 * 109.46741 * 240.00588 * 2 1 3 26 26 H 1.09002 * 109.47016 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.47400 * 300.00455 * 3 2 1 28 28 H 1.09004 * 109.46881 * 60.00674 * 3 2 1 29 29 H 1.09002 * 109.47153 * 304.99767 * 4 2 1 30 30 H 1.09001 * 109.46832 * 184.99958 * 4 2 1 31 31 H 0.97004 * 119.99646 * 179.97438 * 11 10 8 32 32 H 1.08999 * 109.46924 * 59.99608 * 20 18 16 33 33 H 1.09000 * 109.47440 * 180.02562 * 20 18 16 34 34 H 1.09005 * 109.46608 * 300.00221 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 6 1.6414 -2.1734 1.1887 6 7 0.9694 -2.6102 0.1723 7 7 0.5902 -3.9583 0.1010 8 6 0.1856 -4.5037 -1.0870 9 1 -0.1051 -5.5429 -1.1328 10 6 0.1479 -3.7213 -2.2330 11 7 0.5014 -2.4562 -2.1772 12 14 -0.4051 -4.4659 -3.8546 13 1 -1.7950 -4.9707 -3.7190 14 1 -0.3557 -3.4299 -4.9174 15 1 0.4964 -5.5890 -4.2165 16 6 0.6308 -4.7115 1.2235 17 8 0.3147 -5.8823 1.1972 18 6 1.0786 -4.0603 2.5113 19 1 0.2140 -3.6527 3.0352 20 6 1.7776 -5.0958 3.3945 21 8 1.9950 -3.0049 2.1933 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 1.6767 1.9562 0.8901 29 1 1.6055 -0.2619 2.1369 30 1 3.1264 -0.6444 1.2950 31 1 0.4753 -1.9096 -2.9781 32 1 2.6456 -5.4945 2.8695 33 1 2.0992 -4.6237 4.3229 34 1 1.0854 -5.9070 3.6205 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259645177.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:11:44 Heat of formation + Delta-G solvation = -18.213096 kcal Electronic energy + Delta-G solvation = -18261.671180 eV Core-core repulsion = 15389.827048 eV Total energy + Delta-G solvation = -2871.844132 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 240.126 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.09352 -37.29715 -35.98649 -34.94702 -32.28234 -31.32579 -29.89022 -27.22288 -26.41465 -25.36482 -23.13141 -21.64231 -19.57944 -18.71287 -17.97828 -16.71119 -15.55231 -15.11460 -14.77456 -14.17390 -13.99349 -13.69682 -13.56814 -13.08807 -12.45352 -12.29574 -12.13383 -11.78726 -11.71817 -11.50292 -11.34315 -11.16245 -10.95235 -10.61469 -10.41172 -10.35797 -10.26022 -10.07525 -9.89798 -9.48336 -8.81472 -8.25905 -7.46339 -6.17910 -3.87143 2.55113 3.18717 3.23363 3.24964 3.60799 3.82029 4.00892 4.36461 4.80615 5.20438 5.33079 5.42998 5.45874 5.56094 5.61510 5.91993 5.96248 6.06976 6.10259 6.12019 6.34744 6.36569 6.43133 6.48015 6.59715 6.79973 6.93230 7.21178 7.41925 7.47743 7.53306 8.14416 8.57029 9.03834 9.50388 9.81919 10.75685 Molecular weight = 240.13amu Principal moments of inertia in cm(-1) A = 0.015888 B = 0.013462 C = 0.007651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.886528 B = 2079.482766 C = 3658.572566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.082 4.082 3 C -0.145 4.145 4 C -0.023 4.023 5 C 0.178 3.822 6 N -0.178 5.178 7 N -0.273 5.273 8 C -0.324 4.324 9 H 0.114 0.886 10 C 0.047 3.953 11 N -0.808 5.808 12 Si 0.925 3.075 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.273 1.273 16 C 0.383 3.617 17 O -0.563 6.563 18 C 0.084 3.916 19 H 0.078 0.922 20 C -0.124 4.124 21 O -0.358 6.358 22 H 0.090 0.910 23 H 0.025 0.975 24 H 0.043 0.957 25 H 0.099 0.901 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.263 0.737 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.523 6.617 5.467 8.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.100 4.100 3 C -0.202 4.202 4 C -0.062 4.062 5 C -0.048 4.048 6 N -0.005 5.005 7 N -0.080 5.080 8 C -0.451 4.451 9 H 0.132 0.868 10 C -0.163 4.163 11 N -0.441 5.441 12 Si 0.750 3.250 13 H -0.198 1.198 14 H -0.207 1.207 15 H -0.199 1.199 16 C 0.171 3.829 17 O -0.445 6.445 18 C 0.024 3.976 19 H 0.095 0.905 20 C -0.182 4.182 21 O -0.265 6.265 22 H 0.109 0.891 23 H 0.045 0.955 24 H 0.062 0.938 25 H 0.118 0.882 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.183 6.340 4.692 8.184 hybrid contribution -0.157 -0.617 -0.212 0.671 sum 2.026 5.724 4.481 7.546 Atomic orbital electron populations 1.21846 0.94714 1.04259 0.98691 1.20892 0.96999 0.93879 0.98260 1.21867 1.00264 0.96959 1.01127 1.20213 1.01064 0.85120 0.99816 1.25695 0.99615 0.93705 0.85809 1.76238 1.11935 0.96850 1.15445 1.44759 1.51800 1.03299 1.08093 1.19556 1.45803 0.96982 0.82770 0.86831 1.25326 0.96477 0.95372 0.99132 1.70195 1.40757 1.04913 1.28283 0.86056 0.79427 0.78608 0.80877 1.19779 1.20673 1.19867 1.21133 0.86695 0.88351 0.86710 1.90527 1.53244 1.15557 1.85193 1.22523 0.92530 0.87475 0.95104 0.90462 1.21558 1.01457 0.97052 0.98120 1.85954 1.46666 1.40515 1.53372 0.89148 0.95542 0.93834 0.88249 0.93302 0.92848 0.93455 0.90599 0.90223 0.92631 0.91690 0.91597 0.89787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.91 37.16 0.33 -2.16 16 2 C -0.08 -1.37 2.54 -90.62 -0.23 -1.60 16 3 C -0.14 -1.90 9.19 37.16 0.34 -1.56 16 4 C -0.02 -0.37 5.28 -27.88 -0.15 -0.52 16 5 C 0.18 3.79 7.30 -13.29 -0.10 3.70 16 6 N -0.18 -4.40 5.31 32.56 0.17 -4.23 16 7 N -0.27 -7.52 3.61 -10.82 -0.04 -7.56 16 8 C -0.32 -9.26 9.68 -15.10 -0.15 -9.41 16 9 H 0.11 3.32 7.23 -52.48 -0.38 2.94 16 10 C 0.05 1.24 5.49 -17.49 -0.10 1.14 16 11 N -0.81 -21.03 11.16 55.49 0.62 -20.41 16 12 Si 0.92 20.54 29.55 -169.99 -5.02 15.52 16 13 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 14 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 16 C 0.38 9.95 7.39 -10.58 -0.08 9.87 16 17 O -0.56 -15.81 16.01 5.54 0.09 -15.72 16 18 C 0.08 1.74 3.79 -27.69 -0.11 1.64 16 19 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 20 C -0.12 -2.11 9.21 37.16 0.34 -1.77 16 21 O -0.36 -7.48 10.08 -17.06 -0.17 -7.65 16 22 H 0.09 1.99 5.73 -51.93 -0.30 1.70 16 23 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.10 1.99 7.73 -51.93 -0.40 1.59 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.26 6.46 8.31 -40.82 -0.34 6.12 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.08 1.39 7.90 -51.93 -0.41 0.98 16 LS Contribution 284.15 15.07 4.28 4.28 Total: -1.00 -30.75 284.15 -4.81 -35.56 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -4.85 Total: 0.89 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: 0.12 Total: -0.68 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.75 Total: -32.19 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.08 Total: -23.37 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.75 -4.81 -35.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259645177.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.344 kcal (2) G-P(sol) polarization free energy of solvation -30.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds